Factsheet for TraesCS6B01G314600.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plasma membrane
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G000200.1
TraesCS2B01G023800.1
TraesCS2D01G000500.1
TraesCS4A01G302000.1
TraesCS4B01G012100.1
TraesCS4D01G010200.1
TraesCS6A01G285800.1
TraesCS6A01G329400.1
TraesCS6A01G399400.2
TraesCS6B01G314600.1
TraesCS6B01G360200.1
TraesCS6B01G439600.1
TraesCS6D01G266200.1
TraesCS6D01G308300.1
TraesCS6D01G383600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04310.1	TraesCS2A01G000200.1	AT1G04310.1	18577522
AT1G04310.1	TraesCS2B01G023800.1	AT1G04310.1	18577522
AT1G04310.1	TraesCS2D01G000500.1	AT1G04310.1	18577522
AT1G04310.1	TraesCS6A01G285800.1	AT1G04310.1	18577522
AT1G04310.1	TraesCS6A01G329400.1	AT1G04310.1	18577522
AT1G04310.1	TraesCS6A01G399400.2	AT1G04310.1	18577522
AT1G04310.1	TraesCS6B01G314600.1	AT1G04310.1	18577522
AT1G04310.1	TraesCS6B01G360200.1	AT1G04310.1	18577522
AT1G04310.1	TraesCS6B01G439600.1	AT1G04310.1	18577522
AT1G04310.1	TraesCS6D01G266200.1	AT1G04310.1	18577522
AT1G04310.1	TraesCS6D01G308300.1	AT1G04310.1	18577522
AT1G04310.1	TraesCS6D01G383600.1	AT1G04310.1	18577522
AT3G23150.1	TraesCS4A01G302000.1	AT5G03730.1	12177468
AT3G23150.1	TraesCS4B01G012100.1	AT5G03730.1	12177468
AT3G23150.1	TraesCS4D01G010200.1	AT5G03730.1	12177468

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G285800.1	Wheat	plasma membrane	92.46	92.58
TraesCS6D01G266200.1	Wheat	plasma membrane	91.77	92.15
HORVU6Hr1G071860.2	Barley	plasma membrane	88.89	89.75
TraesCS6B01G360200.1	Wheat	cytosol, endoplasmic reticulum, golgi	66.8	66.9
Os07t0259100-01	Rice	mitochondrion, plasma membrane	58.44	54.83
Zm00001d053594_P001	Maize	plasma membrane	52.13	47.32
TraesCS2B01G023800.1	Wheat	plasma membrane	49.66	47.07
EES06508	Sorghum	mitochondrion, plasma membrane	52.13	45.95
KXG36402	Sorghum	plasma membrane	51.71	44.09
Solyc06g051610.1.1	Tomato	cytosol	9.88	43.37
Zm00001d021687_P001	Maize	plasma membrane	49.38	42.11
Solyc06g036450.1.1	Tomato	cytosol	5.76	42.0
GSMUA_Achr11P...	Banana	plasma membrane	43.07	41.42
GSMUA_Achr8P14350_001	Banana	endoplasmic reticulum	42.8	41.22
Solyc04g049990.1.1	Tomato	cytosol	7.27	40.46
Solyc12g044870.1.1	Tomato	cytosol	9.19	40.36
VIT_05s0049g00090.t01	Wine grape	plasma membrane	42.25	40.31
VIT_14s0081g00630.t01	Wine grape	plasma membrane	41.29	39.61
PGSC0003DMT400041983	Potato	plasma membrane	41.02	39.29
Solyc06g053710.2.1	Tomato	plasma membrane	41.02	39.29
PGSC0003DMT400073847	Potato	plasma membrane	41.29	39.24
Solyc11g006180.1.1	Tomato	plasma membrane	40.74	38.72
Solyc09g082910.1.1	Tomato	cytosol	8.78	38.55
Solyc05g055070.2.1	Tomato	plasma membrane	39.37	38.52
TraesCS6B01G439600.1	Wheat	mitochondrion	40.6	37.76
Bra040134.1-P	Field mustard	plasma membrane	39.64	37.73
CDY30004	Canola	plasma membrane	39.64	37.73
PGSC0003DMT400060160	Potato	endoplasmic reticulum	39.37	37.61
AT3G04580.1	Thale cress	plasma membrane	39.37	37.47
Solyc11g065590.1.1	Tomato	cytosol	4.53	36.67
TraesCS5B01G527300.1	Wheat	cytosol, golgi, plasma membrane	18.52	36.0
CDY35503	Canola	plasma membrane	38.41	35.94
Bra015303.1-P	Field mustard	endoplasmic reticulum	30.32	35.88
CDY67999	Canola	plasma membrane	30.45	35.86
Bra023756.1-P	Field mustard	plasma membrane	38.27	35.77
CDY70443	Canola	plasma membrane	38.13	35.64
PGSC0003DMT400044244	Potato	plasma membrane	36.76	35.59
CDY70681	Canola	endoplasmic reticulum	30.04	35.49
Solyc09g089610.2.1	Tomato	endoplasmic reticulum	36.63	35.41
AT1G04310.1	Thale cress	endoplasmic reticulum	31.14	35.19
CDY64702	Canola	mitochondrion	6.31	35.11
Solyc01g014770.1.1	Tomato	cytosol	6.45	35.07
AT3G23150.1	Thale cress	endoplasmic reticulum, plasma membrane	37.17	35.06
CDX86641	Canola	endoplasmic reticulum	28.53	34.96
Solyc04g049320.1.1	Tomato	cytosol, plastid, vacuole	5.21	34.55
KRH31729	Soybean	endoplasmic reticulum	10.56	32.22
Solyc12g062760.1.1	Tomato	cytosol	3.84	31.82
CDY21123	Canola	cytosol	12.89	31.33
Solyc12g038690.1.1	Tomato	cytosol	2.74	31.25
TraesCS5B01G001600.1	Wheat	plasma membrane	26.75	30.95
Solyc04g064840.1.1	Tomato	endoplasmic reticulum	7.68	30.94
Solyc08g068360.1.1	Tomato	cytosol	5.08	30.83
Solyc09g011680.1.1	Tomato	cytosol	4.39	30.77
TraesCS4B01G039300.1	Wheat	cytosol, golgi, plasma membrane	26.2	30.08
Solyc09g065310.1.1	Tomato	cytosol	2.61	29.69
Solyc04g025660.1.1	Tomato	cytosol	4.12	28.85
TraesCS1B01G127000.1	Wheat	cytosol, golgi, plasma membrane	24.14	27.59
Solyc12g027610.1.1	Tomato	cytosol	7.0	26.15
Bra030564.1-P	Field mustard	plasma membrane	33.33	14.44
CDY15498	Canola	plasma membrane	33.33	14.21
TraesCS4B01G050200.1	Wheat	cytosol	15.78	11.41
TraesCS6B01G342700.1	Wheat	mitochondrion	14.81	11.13
TraesCS3B01G469000.1	Wheat	cytosol, golgi, mitochondrion, peroxisome	13.31	9.61
TraesCS2B01G495500.1	Wheat	nucleus	6.86	8.24
TraesCS7B01G405100.1	Wheat	nucleus	10.84	8.15
TraesCS5B01G533800.1	Wheat	endoplasmic reticulum, golgi	8.09	8.04
TraesCS7B01G049400.1	Wheat	plasma membrane	10.84	7.56
TraesCS7B01G049100.1	Wheat	plasma membrane	10.56	6.98

Protein Annotations

MapMan:11.5.2.1	Gene3D:3.40.50.2300	InterPro:CheY-like_superfamily	InterPro:ETR	InterPro:GAF	GO:GO:0000155
GO:GO:0000160	GO:GO:0003674	GO:GO:0003824	GO:GO:0004673	GO:GO:0004871	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005789	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009719	GO:GO:0009987	GO:GO:0010105	GO:GO:0016020	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	GO:GO:0038023	GO:GO:0038199	GO:GO:0050896	GO:GO:0051740	InterPro:IPR001789
PFAM:PF01590	PIRSF:PIRSF026389	PFscan:PS50110	PANTHER:PTHR43719	PANTHER:PTHR43719:SF20	SMART:SM00065
SMART:SM00448	SUPFAM:SSF52172	SUPFAM:SSF55781	InterPro:Sig_transdc_resp-reg_receiver	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6B01G314600
EnsemblPlants:TraesCS6B01G314600.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6B:-:562487590..562489894

Molecular Weight (calculated)

78159.4 Da

IEP (calculated)

7.834

GRAVY (calculated)

0.215

Length

729 amino acids

Sequence
(BLAST)

001: MRRCGDGCDG AVDAMLQCQK VSDFLIAASY LSIPLELLYF ASCADLAPVK WLLLQLAAFA VLGGSVHLLA VLTHHHPHSS GLLLASTAAK LLAALVSLAT
101: ALSLLTFIPR LIRAKLREAL LRAKARQLDR DVGLIRRRVE ATSRVVRMLS RHIRDSPHDH HAILHTTMLH LADALALHSC AVWVPVPGDV LQLVYQLSLR
201: DKGAVVLGSQ APIPADDPDV VDVMSGVAAK VLRPGSWLVA ASGGGLQPPG GVAAIRMPML KVSNFDGGRT PVASSYAILV LVLPDTGRWS SQDLEIVEVV
301: ADQVAVALSH AAVLEEWQSI RDRLADQHRA LLHAKHEAAT ATTGIHSVQS AMCGAMQRQM HSLIGLLSVL QHDAADGMRS EQRLVVDAIA RTSALSLSLA
401: NDADAETLTM SRVPFGLHAL VREAMAVVRC MSGCSGVEFS HHSENSLPLP LPEWVVGDET RVFHLLLHML ATLLGRRCDG AAPGRLTFSV ESCNVGEEER
501: YSRDWIPMRP STGCSMRVKF QVGMQTRSRT KFPHGSASSN VGPSFGMCNK IVQMMNGSMR SSGSDGGSII TVVLQFQLQQ SGARRRTSTP PVPVPRFDGL
601: RVLLADSDGT SRQVTEMLLE KLGCQVMPVP SGAHCIRLLE SAGSCFQLVL LDLDKHAATT SMEDVFKVAL QIGELGSGGW LLVLAALAVA DVDDRVRDAC
701: QRSGINCVIQ KPITLVALGA QLAAALQNN

Best Arabidopsis Sequence Match ( AT1G66340.1 )
(BLAST)

001: MEVCNCIEPQ WPADELLMKY QYISDFFIAI AYFSIPLELI YFVKKSAVFP YRWVLVQFGA FIVLCGATHL INLWTFTTHS RTVALVMTTA KVLTAVVSCA
101: TALMLVHIIP DLLSVKTREL FLKNKAAELD REMGLIRTQE ETGRHVRMLT HEIRSTLDRH TILKTTLVEL GRTLALEECA LWMPTRTGLE LQLSYTLRHQ
201: HPVEYTVPIQ LPVINQVFGT SRAVKISPNS PVARLRPVSG KYMLGEVVAV RVPLLHLSNF QINDWPELST KRYALMVLML PSDSARQWHV HELELVEVVA
301: DQVAVALSHA AILEESMRAR DLLMEQNVAL DLARREAETA IRARNDFLAV MNHEMRTPMH AIIALSSLLQ ETELTPEQRL MVETILKSSN LLATLMNDVL
401: DLSRLEDGSL QLELGTFNLH TLFREVLNLI KPIAVVKKLP ITLNLAPDLP EFVVGDEKRL MQIILNIVGN AVKFSKQGSI SVTALVTKSD TRAADFFVVP
501: TGSHFYLRVK VKDSGAGINP QDIPKIFTKF AQTQSLATRS SGGSGLGLAI SKRFVNLMEG NIWIESDGLG KGCTAIFDVK LGISERSNES KQSGIPKVPA
601: IPRHSNFTGL KVLVMDENGV SRMVTKGLLV HLGCEVTTVS SNEECLRVVS HEHKVVFMDV CMPGVENYQI ALRIHEKFTK QRHQRPLLVA LSGNTDKSTK
701: EKCMSFGLDG VLLKPVSLDN IRDVLSDLLE PRVLYEGM

Arabidopsis Description

ETR1Ethylene receptor 1 [Source:UniProtKB/Swiss-Prot;Acc:P49333]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.