Factsheet for TraesCS6D01G308300.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G000200.1
TraesCS2B01G023800.1
TraesCS2D01G000500.1
TraesCS4A01G302000.1
TraesCS4B01G012100.1
TraesCS4D01G010200.1
TraesCS6A01G285800.1
TraesCS6A01G329400.1
TraesCS6A01G399400.2
TraesCS6B01G314600.1
TraesCS6B01G360200.1
TraesCS6B01G439600.1
TraesCS6D01G266200.1
TraesCS6D01G308300.1
TraesCS6D01G383600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04310.1	TraesCS2A01G000200.1	AT1G04310.1	18577522
AT1G04310.1	TraesCS2B01G023800.1	AT1G04310.1	18577522
AT1G04310.1	TraesCS2D01G000500.1	AT1G04310.1	18577522
AT1G04310.1	TraesCS6A01G285800.1	AT1G04310.1	18577522
AT1G04310.1	TraesCS6A01G329400.1	AT1G04310.1	18577522
AT1G04310.1	TraesCS6A01G399400.2	AT1G04310.1	18577522
AT1G04310.1	TraesCS6B01G314600.1	AT1G04310.1	18577522
AT1G04310.1	TraesCS6B01G360200.1	AT1G04310.1	18577522
AT1G04310.1	TraesCS6B01G439600.1	AT1G04310.1	18577522
AT1G04310.1	TraesCS6D01G266200.1	AT1G04310.1	18577522
AT1G04310.1	TraesCS6D01G308300.1	AT1G04310.1	18577522
AT1G04310.1	TraesCS6D01G383600.1	AT1G04310.1	18577522
AT3G23150.1	TraesCS4A01G302000.1	AT5G03730.1	12177468
AT3G23150.1	TraesCS4B01G012100.1	AT5G03730.1	12177468
AT3G23150.1	TraesCS4D01G010200.1	AT5G03730.1	12177468

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G329400.1	Wheat	plasma membrane	96.84	96.58
HORVU6Hr1G080170.1	Barley	plasma membrane	24.73	95.74
TraesCS6B01G360200.1	Wheat	cytosol, endoplasmic reticulum, golgi	95.6	95.6
HORVU6Hr1G080180.1	Barley	cytosol	63.46	91.85
TraesCS6D01G266200.1	Wheat	plasma membrane	66.48	66.67
Os07t0259100-01	Rice	mitochondrion, plasma membrane	59.48	55.73
Zm00001d053594_P001	Maize	plasma membrane	52.47	47.57
TraesCS2D01G000500.1	Wheat	plasma membrane	49.73	46.65
EES06508	Sorghum	mitochondrion, plasma membrane	52.61	46.31
GSMUA_Achr8P14350_001	Banana	endoplasmic reticulum	46.98	45.18
GSMUA_Achr11P...	Banana	plasma membrane	46.57	44.72
Solyc06g051610.1.1	Tomato	cytosol	9.89	43.37
KXG36402	Sorghum	plasma membrane	49.86	42.46
Solyc06g036450.1.1	Tomato	cytosol	5.77	42.0
VIT_14s0081g00630.t01	Wine grape	plasma membrane	43.13	41.32
VIT_05s0049g00090.t01	Wine grape	plasma membrane	43.13	41.1
Zm00001d021687_P001	Maize	plasma membrane	47.53	40.47
Solyc11g065590.1.1	Tomato	cytosol	4.95	40.0
Solyc12g044870.1.1	Tomato	cytosol	8.93	39.16
Solyc11g006180.1.1	Tomato	plasma membrane	40.8	38.72
PGSC0003DMT400073847	Potato	plasma membrane	40.8	38.72
Solyc06g053710.2.1	Tomato	plasma membrane	40.25	38.5
PGSC0003DMT400041983	Potato	plasma membrane	40.25	38.5
TraesCS6D01G383600.1	Wheat	mitochondrion	41.21	38.27
Solyc05g055070.2.1	Tomato	plasma membrane	39.15	38.26
PGSC0003DMT400060160	Potato	endoplasmic reticulum	39.7	37.88
Bra040134.1-P	Field mustard	plasma membrane	39.84	37.86
CDY30004	Canola	plasma membrane	39.84	37.86
AT3G04580.1	Thale cress	plasma membrane	39.56	37.6
Solyc09g082910.1.1	Tomato	cytosol	8.52	37.35
Solyc04g049990.1.1	Tomato	cytosol	6.59	36.64
Solyc04g049320.1.1	Tomato	cytosol, plastid, vacuole	5.49	36.36
Bra023756.1-P	Field mustard	plasma membrane	38.87	36.28
CDY70443	Canola	plasma membrane	38.87	36.28
CDY35503	Canola	plasma membrane	38.74	36.2
CDY64702	Canola	mitochondrion	6.46	35.88
Solyc01g014770.1.1	Tomato	cytosol	6.59	35.82
AT3G23150.1	Thale cress	endoplasmic reticulum, plasma membrane	37.91	35.7
KRH31729	Soybean	endoplasmic reticulum	11.68	35.56
Solyc09g089610.2.1	Tomato	endoplasmic reticulum	36.68	35.41
CDX86641	Canola	endoplasmic reticulum	28.85	35.29
PGSC0003DMT400044244	Potato	plasma membrane	36.4	35.19
CDY70681	Canola	endoplasmic reticulum	29.53	34.85
Bra015303.1-P	Field mustard	endoplasmic reticulum	29.4	34.74
CDY67999	Canola	plasma membrane	29.4	34.57
AT1G04310.1	Thale cress	endoplasmic reticulum	30.22	34.11
TraesCS5D01G002600.1	Wheat	cytosol, plasma membrane, vacuole	27.88	32.07
Solyc08g068360.1.1	Tomato	cytosol	5.22	31.67
TraesCS4D01G036400.2	Wheat	cytosol, golgi, plasma membrane	27.34	31.34
Solyc12g038690.1.1	Tomato	cytosol	2.75	31.25
Solyc09g065310.1.1	Tomato	cytosol	2.75	31.25
Solyc09g011680.1.1	Tomato	cytosol	4.4	30.77
TraesCS1D01G105600.1	Wheat	cytosol, golgi, plasma membrane	26.24	29.89
Solyc04g064840.1.1	Tomato	endoplasmic reticulum	7.42	29.83
Solyc04g025660.1.1	Tomato	cytosol	4.26	29.81
CDY21123	Canola	cytosol	12.09	29.33
Solyc12g062760.1.1	Tomato	cytosol	3.43	28.41
Solyc12g027610.1.1	Tomato	cytosol	7.42	27.69
Bra030564.1-P	Field mustard	plasma membrane	32.97	14.26
CDY15498	Canola	plasma membrane	33.24	14.15
TraesCS4D01G050400.1	Wheat	cytosol	16.35	11.95
TraesCS6D01G291900.1	Wheat	mitochondrion	15.52	11.65
TraesCS3D01G426600.1	Wheat	plasma membrane	14.84	10.85
TraesCS7D01G485500.1	Wheat	nucleus	11.68	8.77
TraesCS2D01G472500.1	Wheat	cytosol	6.59	8.35
TraesCS7D01G148400.1	Wheat	endoplasmic reticulum, plasma membrane	9.75	7.74
TraesCS7D01G148100.1	Wheat	plasma membrane	10.99	7.39
TraesCS7D01G148700.1	Wheat	peroxisome, plasma membrane, plastid	9.75	7.37

Protein Annotations

Gene3D:1.10.287.130	MapMan:11.5.2.1	Gene3D:3.30.450.40	Gene3D:3.40.50.2300	InterPro:CheY-like_superfamily	InterPro:ETR
InterPro:GAF	InterPro:GAF-like_dom_sf	GO:GO:0000155	GO:GO:0000160	GO:GO:0003674	GO:GO:0003824
GO:GO:0004673	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009987	GO:GO:0010105
GO:GO:0016020	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0038023	GO:GO:0038199
GO:GO:0050896	GO:GO:0051740	InterPro:IPR001789	InterPro:IPR029016	PFAM:PF00072	PFAM:PF01590
PIRSF:PIRSF026389	PFscan:PS50110	PANTHER:PTHR43719	PANTHER:PTHR43719:SF20	SMART:SM00065	SMART:SM00448
SUPFAM:SSF52172	SUPFAM:SSF55781	InterPro:Sig_transdc_resp-reg_receiver	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6D01G308300	EnsemblPlants:TraesCS6D01G308300.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:419266479..419268742

Molecular Weight (calculated)

78409.7 Da

IEP (calculated)

8.105

GRAVY (calculated)

0.171

Length

728 amino acids

Sequence
(BLAST)

001: MARHFAAAGA GAVQRYYCGG ACDGGDDGAV QAMLQCQRVS DFLIAASYLS IPLELLYFAS CADPAPLKWL LLQLAAFAVL GGATHLLAVF SLAHPHSSGL
101: LLASTAAKLL AALVSFATAV SLVALIPRLI RAKLREAFLR AKARQLDHDL GLIRRRVEAT SRVVRMLTHR IRSSPLDAHS ILHTTMLHLA DALELHSCAV
201: WMPGRDAGDD LHLVHQLSLR GKGPVRIVLG SQAPISPDDP DVLDVMASEA AKVLRPGSEL ATASSGELQP PGAVAAIRIP MLKVSNFDGR KTPVASSYAI
301: LVMALRSKAS GSGSREWSGH DLEVVQVIAD QVAVALSHAA VLEEWQAMSD RLAEQNRALV HAKQDAMMAT EGINSIQSAM CDGMRRPMYS IIGLLSMVRQ
401: AEDMRPEQRL VADAIARTST LSLALMNDVD RETLTVNRMP FDLRSLMREA MSVAGCLASC GGAGFSYQLE NALPEWVVGD ETRVFHLLLQ MAGDVLGRRR
501: DGAGRLSFSI KSCSADQKDC IPVWPNLSAG CSICVEFQVA MERSTGCSQP PSSPAGSQIN MCKKIVQMMN GTMWSASDGE SITLILHFQL QQSRACRRTS
601: SSIPHFNGLR ILLAEGDRMS RAVTQKLLEQ LGCQAISVSS GAHCLALLGS AGSSFQLLLL DLDMDAFEVA LQIRGLKNRR WLLIVAALAV TVDDSIREMC
701: RHSGINGLIQ KPLTLTALGA QLHRVLRN

Best Arabidopsis Sequence Match ( AT1G66340.1 )
(BLAST)

001: MEVCNCIEPQ WPADELLMKY QYISDFFIAI AYFSIPLELI YFVKKSAVFP YRWVLVQFGA FIVLCGATHL INLWTFTTHS RTVALVMTTA KVLTAVVSCA
101: TALMLVHIIP DLLSVKTREL FLKNKAAELD REMGLIRTQE ETGRHVRMLT HEIRSTLDRH TILKTTLVEL GRTLALEECA LWMPTRTGLE LQLSYTLRHQ
201: HPVEYTVPIQ LPVINQVFGT SRAVKISPNS PVARLRPVSG KYMLGEVVAV RVPLLHLSNF QINDWPELST KRYALMVLML PSDSARQWHV HELELVEVVA
301: DQVAVALSHA AILEESMRAR DLLMEQNVAL DLARREAETA IRARNDFLAV MNHEMRTPMH AIIALSSLLQ ETELTPEQRL MVETILKSSN LLATLMNDVL
401: DLSRLEDGSL QLELGTFNLH TLFREVLNLI KPIAVVKKLP ITLNLAPDLP EFVVGDEKRL MQIILNIVGN AVKFSKQGSI SVTALVTKSD TRAADFFVVP
501: TGSHFYLRVK VKDSGAGINP QDIPKIFTKF AQTQSLATRS SGGSGLGLAI SKRFVNLMEG NIWIESDGLG KGCTAIFDVK LGISERSNES KQSGIPKVPA
601: IPRHSNFTGL KVLVMDENGV SRMVTKGLLV HLGCEVTTVS SNEECLRVVS HEHKVVFMDV CMPGVENYQI ALRIHEKFTK QRHQRPLLVA LSGNTDKSTK
701: EKCMSFGLDG VLLKPVSLDN IRDVLSDLLE PRVLYEGM

Arabidopsis Description

ETR1Ethylene receptor 1 [Source:UniProtKB/Swiss-Prot;Acc:P49333]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.