Factsheet for TraesCS3D01G426600.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 4
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G325900.1
TraesCS1B01G339200.1
TraesCS1D01G327700.1
TraesCS3A01G321300.2
TraesCS3B01G343300.2
TraesCS3D01G310000.1
TraesCS5A01G060400.1
TraesCS5B01G071600.1
TraesCS5D01G072000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27320.1	TraesCS1A01G325900.1	AT5G43560.1	18642946
AT1G27320.1	TraesCS1B01G339200.1	AT5G43560.1	18642946
AT1G27320.1	TraesCS1D01G327700.1	AT5G43560.1	18642946
AT1G27320.1	TraesCS3A01G321300.2	AT5G43560.1	18642946
AT1G27320.1	TraesCS3B01G343300.2	AT5G43560.1	18642946
AT1G27320.1	TraesCS3D01G310000.1	AT5G43560.1	18642946
AT1G27320.1	TraesCS5A01G060400.1	AT5G43560.1	18642946
AT1G27320.1	TraesCS5B01G071600.1	AT5G43560.1	18642946
AT1G27320.1	TraesCS5D01G072000.1	AT5G43560.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G433200.1	Wheat	peroxisome	97.49	96.71
TraesCS3B01G469000.1	Wheat	cytosol, golgi, mitochondrion, peroxisome	90.65	89.4
HORVU3Hr1G094870.10	Barley	plasma membrane	91.66	87.11
Zm00001d042312_P003	Maize	golgi, mitochondrion, plasma membrane	78.29	77.36
KXG34012	Sorghum	cytosol, peroxisome, plasma membrane	77.89	77.11
Os01t0923700-04	Rice	endoplasmic reticulum, golgi, peroxisome	78.69	76.54
Zm00001d012005_P002	Maize	plasma membrane	78.59	74.9
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, peroxisome, plasma membrane	67.04	68.41
GSMUA_AchrUn_...	Banana	cytosol, golgi, plasma membrane	67.54	67.33
GSMUA_Achr4P15980_001	Banana	cytosol	65.53	65.33
PGSC0003DMT400084727	Potato	cytosol, golgi, plasma membrane	34.17	63.2
VIT_01s0010g03780.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	63.32	60.64
KRH58780	Soybean	endoplasmic reticulum, golgi, plasma membrane	60.0	57.96
Solyc05g015610.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	60.1	57.95
CDY03909	Canola	endoplasmic reticulum, golgi, plasma membrane	58.29	57.94
KRH42680	Soybean	plasma membrane	59.7	57.67
Bra030037.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	58.59	57.33
CDY15717	Canola	endoplasmic reticulum, golgi, plasma membrane	58.59	57.1
AT1G27320.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	58.79	56.47
VIT_04s0008g03460.t01	Wine grape	plastid	18.29	54.17
TraesCS4D01G050400.1	Wheat	cytosol	48.34	48.29
TraesCS6D01G291900.1	Wheat	mitochondrion	46.13	47.32
TraesCS5D01G002600.1	Wheat	cytosol, plasma membrane, vacuole	13.47	21.17
TraesCS1D01G105600.1	Wheat	cytosol, golgi, plasma membrane	13.37	20.81
TraesCS4D01G036400.2	Wheat	cytosol, golgi, plasma membrane	13.17	20.63
TraesCS7D01G485500.1	Wheat	nucleus	19.0	19.5
TraesCS7D01G148400.1	Wheat	endoplasmic reticulum, plasma membrane	16.08	17.45
TraesCS7D01G148100.1	Wheat	plasma membrane	18.49	17.01
TraesCS7D01G148700.1	Wheat	peroxisome, plasma membrane, plastid	16.38	16.93
TraesCS2D01G000500.1	Wheat	plasma membrane	12.96	16.62
TraesCS6D01G383600.1	Wheat	mitochondrion	12.46	15.82
TraesCS2D01G472500.1	Wheat	cytosol	8.84	15.3
TraesCS6D01G308300.1	Wheat	plasma membrane	10.85	14.84
TraesCS6D01G266200.1	Wheat	plasma membrane	10.05	13.77

Protein Annotations

Gene3D:1.10.287.130	MapMan:11.4.2.1	Gene3D:3.30.450.350	Gene3D:3.40.50.2300	InterPro:CHASE_dom	InterPro:CheY-like_superfamily
ncoils:Coil	GO:GO:0000003	GO:GO:0000155	GO:GO:0000160	GO:GO:0003674	GO:GO:0003824
GO:GO:0004673	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006464	GO:GO:0006810	GO:GO:0006950	GO:GO:0006970	GO:GO:0007154
GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009409
GO:GO:0009414	GO:GO:0009605	GO:GO:0009607	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719
GO:GO:0009791	GO:GO:0009908	GO:GO:0009909	GO:GO:0009987	GO:GO:0009991	GO:GO:0010029
GO:GO:0010087	GO:GO:0010150	GO:GO:0010271	GO:GO:0016020	GO:GO:0016036	GO:GO:0016301
GO:GO:0016310	GO:GO:0016740	GO:GO:0016772	GO:GO:0019538	GO:GO:0034757	GO:GO:0038023
GO:GO:0040007	GO:GO:0042742	GO:GO:0043424	GO:GO:0048509	GO:GO:0048831	GO:GO:0070417
GO:GO:0071215	GO:GO:0071329	GO:GO:0080117	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:HisK_dim/P
InterPro:HisK_dim/P_sf	InterPro:His_kinase_dom	InterPro:IPR001789	InterPro:IPR005467	InterPro:IPR006189	InterPro:IPR036890
PFAM:PF00072	PFAM:PF00512	PFAM:PF02518	PFAM:PF03924	PRINTS:PR00344	PFscan:PS50109
PFscan:PS50110	PFscan:PS50839	PANTHER:PTHR43719	PANTHER:PTHR43719:SF14	SMART:SM00387	SMART:SM00388
SMART:SM00448	SMART:SM01079	SUPFAM:SSF47384	SUPFAM:SSF52172	SUPFAM:SSF55874	InterPro:Sig_transdc_His_kin-like_C
InterPro:Sig_transdc_resp-reg_receiver	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS3D01G426600	EnsemblPlants:TraesCS3D01G426600.1	TIGR:cd00075	TIGR:cd00082
TIGR:cd00156	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:539897256..539902187

Molecular Weight (calculated)

110893.0 Da

IEP (calculated)

8.584

GRAVY (calculated)

-0.178

Length

995 amino acids

Sequence
(BLAST)

001: MEGKGAVAAG LVGFLGMGLD RVRLLPLPEK LSAKALRSHV RGHGSREARE RWWRWTLFLW VVGWTLICLQ IFHYFDSGAV EKRRESLASM CDERARMLQD
101: QFNVSMNHLQ ALAILVNTFH HSLNPSAITQ ATFARYAERT AFERPLTSGV AYAVRVTHAE RDQFERQQGW SIKKMYSSPN SQGPGDAAVA EIRGPADEYA
201: PVIFAQDAYK NVISFDMLSG ADDRENIIRA RESGKGVLTA PFQLLNGRLG VILTYSVYKS EPPADARLQE RVQAAIGYLG GIFDIEALVD KLLHQLAGKQ
301: SIMVNVYDTT NDKPISMYGS DDTGSGMFHN STLNFGDPSR RHEMHCRFMQ KPPLPWLAIT YSLGAYVIAL LIGHIFYATV HRIAKVEDDL QIMKKLKKCA
401: EAADVAKSQF LATVSHEIRT PMNGVLGMLQ MLMDTDLDTT QQDYVRTAQA SGKALVSLIN EVLDQAKIES GKLELEAVPF DLRLVCDDIL SLFCGKAQEK
501: GLELAVYVSD QVPQTLIGDP GRMRQIITNL MGNSIKFTER GHIYLTVHVV EEVMSCLEVE TEFQNTNNTY NTLSGYKVAN RRHSWQSFQL FNTDLHSAEM
601: PFAPILPETI RLIISVEDTG VGIPPEAQSR IFMPFMQVGP SIARIHGGTG IGLSISKCLV HLMKGEIGYV SIPNVGSTFS FTAVLTKARS NANANKSPGF
701: KGINALVVDH KPVRAKVTKY HLQRLGVKTE LTTDVNQVIP KMNCASLVTR LVLVDKETWM KESHSMPHLL SKLRSKDQSD PPKLFLLENP TNSIKSSSNI
801: SREHNLNVIM KPLRASMLQA SLRRALGGVD KVHGKNGVVG NSALGSLLHK RQIIVVDDNV VNLKVAAGAL KKYGAEVICA DSGKKAIALL KPPHSFDACF
901: MDIQMPEMDG FEATKRIRMM ERELNERIER GEAPPECAKV RRWRTPILAM TADVIQATYE QCLKCEMDGY VSKPFEGEQL YREVTRFFQS HDHVQ

Best Arabidopsis Sequence Match ( AT1G27320.1 )
(BLAST)

0001: MSLFHVLGFG VKIGHLFWML CCWFVSWFVD NGIEDKSGLL VGSVGDLEKT KMTTLKKKNK MWFWNKISSS GLKIPSFSYQ FLGSVKFNKA WWRKLVVVWV
0101: VFWVLVSIWT FWYFSSQAME KRKETLASMC DERARMLQDQ FNVSMNHVQA MSILISTFHH GKIPSAIDQR TFSEYTDRTS FERPLTSGVA YAMRVLHSER
0201: EEFERQQGWT IRKMYSLEQN PVHKDDYDLE ALEPSPVQEE YAPVIFAQDT VSHVVSLDML SGKEDRENVL RARSSGKGVL TAPFPLIKTN RLGVILTFAV
0301: YKRDLPSNAT PKERIEATNG YLGGVFDIES LVENLLQQLA SKQTILVNVY DITNHSQPIS MYGTNVSADG LERVSPLIFG DPLRKHEMRC RFKQKPPWPV
0401: LSMVTSFGIL VIALLVAHII HATVSRIHKV EEDCDKMKQL KKKAEAADVA KSQFLATVSH EIRTPMNGVL GMLHMLMDTE LDVTQQDYVR TAQASGKALV
0501: SLINEVLDQA KIESGKLELE EVRFDLRGIL DDVLSLFSSK SQQKGVELAV YISDRVPDML IGDPGRFRQI LTNLMGNSIK FTEKGHIFVT VHLVDELFES
0601: IDGETASSPE STLSGLPVAD RQRSWENFKA FSSNGHRSFE PSPPDINLIV SVEDTGVGIP VEAQSRIFTP FMQVGPSISR THGGTGIGLS ISKCLVGLMK
0701: GEIGFSSTPK VGSTFTFTAV FSNGMQPAER KNDNNQPIFS EFRGMKAVVV DHRPARAKVS WYHFQRLGIR VEVVPRVEQA LHYLKIGTTT VNMILIEQEI
0801: WNREADDFIK KLQKDPLFLS PKLILLANSV ESSISEALCT GIDPPIVIVK PLRASMLAAT LQRGLGIGIR EPPQHKGPPA LILRNLLLGR KILIVDDNNV
0901: NLRVAAGALK KYGADVVCAE SGIKAISLLK PPHEFDACFM DIQMPEMDGF EATRRIRDME EEMNKRIKNG EALIVENGNK TSWHLPVLAM TADVIQATHE
1001: ECLKCGMDGY VSKPFEAEQL YREVSRFFNS PSDTES

Arabidopsis Description

AHK3HK3 [Source:UniProtKB/TrEMBL;Acc:A0A178WL02]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.