Factsheet for GSMUA_Achr4P15980_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr1P22740_001
GSMUA_Achr2P12590_001
GSMUA_Achr4P17470_001
GSMUA_Achr5P03190_001
GSMUA_Achr7P14570_001
GSMUA_Achr7P14620_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27320.1	GSMUA_Achr11P...	AT3G21510.1	16965536
AT1G27320.1	GSMUA_Achr7P14570_001	AT3G21510.1	16965536
AT1G27320.1	GSMUA_Achr7P14620_001	AT3G21510.1	16965536
AT1G27320.1	GSMUA_AchrUn_...	AT3G21510.1	16965536
AT1G27320.1	GSMUA_Achr11P...	AT3G29350.1	16965536
AT1G27320.1	GSMUA_Achr7P14570_001	AT3G29350.1	16965536
AT1G27320.1	GSMUA_Achr7P14620_001	AT3G29350.1	16965536
AT1G27320.1	GSMUA_AchrUn_...	AT3G29350.1	16965536
AT1G27320.1	GSMUA_Achr1P22740_001	AT5G35750.1	16965536
AT1G27320.1	GSMUA_Achr4P17470_001	AT5G35750.1	16965536
AT1G27320.1	GSMUA_AchrUn_...	AT5G35750.1	16965536
AT1G27320.1	GSMUA_Achr2P12590_001	AT5G43560.1	18642946
AT1G27320.1	GSMUA_Achr5P03190_001	AT5G43560.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, peroxisome, plasma membrane	82.57	84.51
GSMUA_AchrUn_...	Banana	cytosol, golgi, plasma membrane	83.27	83.27
PGSC0003DMT400084727	Potato	cytosol, golgi, plasma membrane	36.97	68.59
Os01t0923700-04	Rice	endoplasmic reticulum, golgi, peroxisome	67.64	65.98
TraesCS3D01G426600.1	Wheat	plasma membrane	65.33	65.53
Zm00001d042312_P003	Maize	golgi, mitochondrion, plasma membrane	65.63	65.04
TraesCS3A01G433200.1	Wheat	peroxisome	65.23	64.91
KXG34012	Sorghum	cytosol, peroxisome, plasma membrane	65.33	64.88
TraesCS3B01G469000.1	Wheat	cytosol, golgi, mitochondrion, peroxisome	65.23	64.52
VIT_01s0010g03780.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	66.73	64.1
Zm00001d012005_P002	Maize	plasma membrane	66.13	63.22
KRH42680	Soybean	plasma membrane	64.73	62.72
KRH58780	Soybean	endoplasmic reticulum, golgi, plasma membrane	64.23	62.23
HORVU3Hr1G094870.10	Barley	plasma membrane	65.03	61.99
Solyc05g015610.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	62.53	60.47
CDY03909	Canola	endoplasmic reticulum, golgi, plasma membrane	60.02	59.84
Bra030037.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	60.72	59.59
AT1G27320.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	61.62	59.36
CDY15717	Canola	endoplasmic reticulum, golgi, plasma membrane	60.62	59.26
GSMUA_Achr4P17470_001	Banana	cytosol	45.29	58.32
GSMUA_AchrUn_...	Banana	cytosol	53.21	55.78
GSMUA_Achr10P...	Banana	cytosol	48.3	54.59
GSMUA_Achr8P22930_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	45.79	53.89
GSMUA_Achr7P11260_001	Banana	mitochondrion	48.5	53.13
VIT_04s0008g03460.t01	Wine grape	plastid	17.74	52.68
GSMUA_Achr1P22740_001	Banana	cytosol	40.38	49.51
GSMUA_Achr5P00120_001	Banana	cytosol	10.12	28.21
GSMUA_Achr1P23390_001	Banana	cytosol	19.14	21.85
GSMUA_Achr11P...	Banana	cytosol	13.13	20.63
GSMUA_Achr5P21290_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	11.72	20.28
GSMUA_Achr3P22920_001	Banana	extracellular	17.94	18.65
GSMUA_Achr7P26840_001	Banana	plasma membrane	12.12	18.25
GSMUA_Achr11P...	Banana	plasma membrane	13.63	17.94
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, plasma membrane	11.42	17.48
GSMUA_Achr8P14350_001	Banana	endoplasmic reticulum	12.53	16.51
GSMUA_Achr11P...	Banana	cytosol	5.61	15.22

Protein Annotations

Gene3D:1.10.287.130	MapMan:11.4.2.1	Gene3D:3.30.450.350	Gene3D:3.40.50.2300	InterPro:CHASE_dom	InterPro:CheY-like_superfamily
ncoils:Coil	GO:GO:0000155	GO:GO:0000160	GO:GO:0003674	GO:GO:0003824	GO:GO:0004871
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016301
GO:GO:0016310	GO:GO:0016740	GO:GO:0016772	GO:GO:0019538	GO:GO:0023014	GO:GO:0038023
EnsemblPlantsGene:GSMUA_Achr4G15980_001	EnsemblPlants:GSMUA_Achr4P15980_001	EnsemblPlants:GSMUA_Achr4T15980_001	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:HisK_dim/P
InterPro:HisK_dim/P_sf	InterPro:His_kinase_dom	InterPro:IPR001789	InterPro:IPR005467	InterPro:IPR006189	InterPro:IPR036890
UniProt:M0SPB2	PFAM:PF00072	PFAM:PF00512	PFAM:PF02518	PFAM:PF03924	PRINTS:PR00344
PFscan:PS50109	PFscan:PS50110	PFscan:PS50839	PANTHER:PTHR43719	PANTHER:PTHR43719:SF14	SMART:SM00387
SMART:SM00388	SMART:SM00448	SMART:SM01079	SUPFAM:SSF47384	SUPFAM:SSF52172	SUPFAM:SSF55874
InterPro:Sig_transdc_His_kin-like_C	InterPro:Sig_transdc_resp-reg_receiver	TMHMM:TMhelix	UniParc:UPI000296B87D	SEG:seg	:

Description

Histidine kinase 3 [Source:GMGC_GENE;Acc:GSMUA_Achr4G15980_001]

Coordinates

chr4:-:14053774..14061190

Molecular Weight (calculated)

112337.0 Da

IEP (calculated)

7.068

GRAVY (calculated)

-0.159

Length

998 amino acids

Sequence
(BLAST)

001: MNWFIDAQIM DQKTGYLSDE CNSLLEWSKI FPARDWRTYL YNNYFESKKV RGIWWKKLLA WWVAAWFLGS LSIFWFMNSQ AVDKRREMLA SMCDERARML
101: QDQFNVSMNH LQALAILIST FHHAKEHSAI DQITFARYAE RTAFERPLTS GVAYAVKVLH SEREQFEKQH GWRIRRMDPT EQTPAREEDA DFDNQETSPV
201: KDEYAPVIFA QDTYKHVISF DMLTGKEDRE NILRARESGK GVLTAPFQLL KSKRLGVILT YAVYKSQLPS YATPAERIQA AIGYLGGIFD IEALVDKLLH
301: QLACKHSIVV SVYDTTNPDA PISMYGSNMT GIGMYHNSTL HFGDPVRKHE MHCRFKQKSP LPWLAITTSF GTLVIALLVG YIIHATVNRI AKVEDDYRQM
401: MELKKRAEAA DVAKSQFLAT VSHEIRTPMN GVLGMLQMLM DTDLDITQED YVRTAQASGK ALVSLINEVL DQAKIESGKL ELEAVPFDLR AVLDDILSLF
501: YGKAQEKGLE LAVYVSDQVP EILIGDHGRI RQIITNLIGN SIKFTERGHI YLTVHLIEEM NSPDVVTEAH STNTLSGFPV TDRRCSWESF KIFNQGLSAT
601: DPSLPSISSD LINLIISVED TGLGIPLEAQ SRVFTPFMQV RPSVSRIHGG TGIGLSISKC LVGLMKGEIG FVSKPQIGST FTFTVVLTRA YAISNDYKSS
701: EFHGMAALVV DHRPERAKVT KYHLNRLGIY AILEIDPNKV LPRLTSGTLT TNMVIIEKET WSNNASIWPS IISNLKGDQL DIPKVLLLAG PASSAKGMSV
801: GSMEYISTII SKPLRASMLQ LSLRRAMGCG DGEHAQDERL PRLSLNRLLN EKQILVVDDN IVNLRVAAGA LKRYGAEVTC AESGKKAIKM LKPPHKFDAC
901: FMDIQMPEMD GFQATRRIRE MEADVNNLIK HGKVPFECYR DVLHLHIPIL AMTADVIHAT HEECLRCGMD GYVSKPFEGE QLYREVARFL ETSAKGNQ

Best Arabidopsis Sequence Match ( AT1G27320.1 )
(BLAST)

0001: MSLFHVLGFG VKIGHLFWML CCWFVSWFVD NGIEDKSGLL VGSVGDLEKT KMTTLKKKNK MWFWNKISSS GLKIPSFSYQ FLGSVKFNKA WWRKLVVVWV
0101: VFWVLVSIWT FWYFSSQAME KRKETLASMC DERARMLQDQ FNVSMNHVQA MSILISTFHH GKIPSAIDQR TFSEYTDRTS FERPLTSGVA YAMRVLHSER
0201: EEFERQQGWT IRKMYSLEQN PVHKDDYDLE ALEPSPVQEE YAPVIFAQDT VSHVVSLDML SGKEDRENVL RARSSGKGVL TAPFPLIKTN RLGVILTFAV
0301: YKRDLPSNAT PKERIEATNG YLGGVFDIES LVENLLQQLA SKQTILVNVY DITNHSQPIS MYGTNVSADG LERVSPLIFG DPLRKHEMRC RFKQKPPWPV
0401: LSMVTSFGIL VIALLVAHII HATVSRIHKV EEDCDKMKQL KKKAEAADVA KSQFLATVSH EIRTPMNGVL GMLHMLMDTE LDVTQQDYVR TAQASGKALV
0501: SLINEVLDQA KIESGKLELE EVRFDLRGIL DDVLSLFSSK SQQKGVELAV YISDRVPDML IGDPGRFRQI LTNLMGNSIK FTEKGHIFVT VHLVDELFES
0601: IDGETASSPE STLSGLPVAD RQRSWENFKA FSSNGHRSFE PSPPDINLIV SVEDTGVGIP VEAQSRIFTP FMQVGPSISR THGGTGIGLS ISKCLVGLMK
0701: GEIGFSSTPK VGSTFTFTAV FSNGMQPAER KNDNNQPIFS EFRGMKAVVV DHRPARAKVS WYHFQRLGIR VEVVPRVEQA LHYLKIGTTT VNMILIEQEI
0801: WNREADDFIK KLQKDPLFLS PKLILLANSV ESSISEALCT GIDPPIVIVK PLRASMLAAT LQRGLGIGIR EPPQHKGPPA LILRNLLLGR KILIVDDNNV
0901: NLRVAAGALK KYGADVVCAE SGIKAISLLK PPHEFDACFM DIQMPEMDGF EATRRIRDME EEMNKRIKNG EALIVENGNK TSWHLPVLAM TADVIQATHE
1001: ECLKCGMDGY VSKPFEAEQL YREVSRFFNS PSDTES

Arabidopsis Description

AHK3HK3 [Source:UniProtKB/TrEMBL;Acc:A0A178WL02]
SUBAcon: [golgi,plasma membrane,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.