Factsheet for GSMUA_Achr2P12590_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P15980_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43560.1	GSMUA_Achr4P15980_001	AT1G27320.1	18642946
AT5G43560.1	GSMUA_AchrUn_...	AT1G27320.1	18642946
AT5G43560.1	GSMUA_AchrUn_...	AT1G27320.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042094	Potato	cytosol	26.02	68.8
OQU79503	Sorghum	nucleus	28.16	66.89
Solyc06g053740.2.1	Tomato	cytosol	24.16	62.5
Zm00001d030958_P001	Maize	nucleus	26.3	62.06
AT5G52330.3	Thale cress	cytosol	21.84	59.19
GSMUA_Achr5P03190_001	Banana	nucleus	75.65	57.65
CDX73257	Canola	cytosol	20.17	53.45
VIT_05s0020g04980.t01	Wine grape	nucleus	55.95	52.53
KRH31732	Soybean	nucleus	53.35	50.4
KRH34524	Soybean	nucleus	52.79	49.78
KRG92287	Soybean	nucleus	52.04	49.12
EES16279	Sorghum	nucleus	51.12	49.02
TraesCS5A01G060400.1	Wheat	nucleus	51.02	48.89
TraesCS5B01G071600.1	Wheat	nucleus	50.93	48.84
HORVU5Hr1G016190.3	Barley	nucleus	50.93	48.8
Bra023279.1-P	Field mustard	cytosol	15.8	48.71
TraesCS5D01G072000.1	Wheat	nucleus	50.84	48.71
CDX93823	Canola	cytosol	17.47	48.58
Zm00001d030960_P003	Maize	nucleus	50.28	48.13
Zm00001d041395_P002	Maize	nucleus	48.88	47.34
Os05t0508700-01	Rice	nucleus	33.92	47.34
KRG90366	Soybean	endoplasmic reticulum, plasma membrane	53.53	46.91
Solyc03g005430.2.1	Tomato	nucleus	50.0	46.82
Solyc06g053750.2.1	Tomato	nucleus	48.42	45.78
CDY10066	Canola	nucleus	43.03	45.66
Solyc09g089560.2.1	Tomato	nucleus	46.84	45.65
CDX89828	Canola	nucleus	44.8	45.43
Bra015302.1-P	Field mustard	nucleus	44.7	45.38
CDY18218	Canola	nucleus	44.33	45.09
CDX86642	Canola	nucleus	43.77	45.07
CDY32539	Canola	nucleus	42.1	45.03
CDY26906	Canola	cytosol	9.01	44.09
Bra010174.1-P	Field mustard	cytosol	9.01	44.09
AT1G04300.3	Thale cress	nucleus	44.33	44.09
Bra032518.1-P	Field mustard	nucleus	40.61	43.96
AT5G43560.1	Thale cress	nucleus	42.94	43.79
AT4G16045.1	Thale cress	cytosol	14.68	41.36
CDY01258	Canola	cytosol	7.71	40.49
CDY01264	Canola	cytosol	7.62	40.0
Os12t0597200-01	Rice	cytosol, nucleus, plastid	10.5	36.57
CDY22344	Canola	nucleus	31.13	36.14
EES01550	Sorghum	nucleus	40.52	36.03
CDX94711	Canola	nucleus	32.16	35.93
Os01t0775300-01	Rice	cytosol, mitochondrion, nucleus	43.49	35.92
Bra033684.1-P	Field mustard	nucleus	30.86	35.81
KXG22306	Sorghum	nucleus	42.84	35.79
Zm00001d038655_P003	Maize	nucleus	42.57	35.23
TraesCS3D01G310000.1	Wheat	nucleus	41.54	34.76
Zm00001d043294_P006	Maize	nucleus	40.89	34.38
TraesCS3B01G343300.2	Wheat	nucleus	41.73	34.04
TraesCS3A01G321300.2	Wheat	nucleus	41.54	33.99
TraesCS1B01G339200.1	Wheat	nucleus	43.77	33.98
TraesCS1A01G325900.1	Wheat	nucleus	43.77	33.93
TraesCS1D01G327700.1	Wheat	nucleus	43.68	33.86
HORVU1Hr1G078170.6	Barley	cytosol	44.15	33.03
HORVU3Hr1G075800.5	Barley	cytosol, nucleus, plastid	41.82	32.89
Zm00001d010716_P002	Maize	nucleus	38.48	31.46
PGSC0003DMT400042093	Potato	nucleus	17.57	28.29
GSMUA_Achr6P14230_001	Banana	cytosol	5.48	27.06
GSMUA_Achr10P...	Banana	cytosol	16.73	16.14
GSMUA_Achr5P02720_001	Banana	cytosol	15.43	14.89
GSMUA_Achr4P28400_001	Banana	cytosol	15.33	14.8
GSMUA_Achr4P22710_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	15.15	14.16
GSMUA_Achr6P03040_001	Banana	nucleus	3.53	8.39
GSMUA_Achr11P...	Banana	nucleus	7.43	7.33
GSMUA_Achr5P23550_001	Banana	plastid	7.16	5.86
Bra041162.1-P	Field mustard	cytosol, nucleus, plastid	0.93	5.03
GSMUA_Achr6P03030_001	Banana	cytosol, nucleus, plastid	3.44	4.4

Protein Annotations

Gene3D:2.60.210.10	MapMan:22.5.1.6	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr2G12590_001
EnsemblPlants:GSMUA_Achr2P12590_001	EnsemblPlants:GSMUA_Achr2T12590_001	InterPro:IPR002083	InterPro:IPR008974	UniProt:M0S7F0	InterPro:MATH/TRAF_dom
PFAM:PF00917	PFscan:PS50144	PANTHER:PTHR45001	SMART:SM00061	SUPFAM:SSF49599	InterPro:TRAF-like
UniParc:UPI00029499F9	SEG:seg	:	:	:	:

Description

Putative MATH domain-containing protein At5g43560 [Source:GMGC_GENE;Acc:GSMUA_Achr2G12590_001]

Coordinates

chr2:+:15003404..15018020

Molecular Weight (calculated)

120024.0 Da

IEP (calculated)

6.871

GRAVY (calculated)

-0.699

Length

1076 amino acids

Sequence
(BLAST)

0001: MTGTITEDYG MSLRSSATEG TLSEQRCPSS DSITEWRSCE QVENGTPSTS PPYWDTDDDD DGRSKTFELY GRFTWKIEKF STINKRELRS NAFEVGGYKW
0101: YILIYPQGCD VCNHLSLFLC VANHDKLLPG WSHFAQFTIA VVNKDPKKSK YSDTLHRFWK KEHDWGWKKF MELSKVYDGF IVADTLVIKA QVQVIREKAD
0201: RPFRCLDCQY RRELVRVYLS NVEKVCRHFL EERIGKLSKF VEDKVRWSGF RAFWFGMDLN SRWRMSRDRT DAILKAVVKH FFIEKEVTST LVMDSLYSGL
0301: KALEFQSKNM KGRARLVDLE ELPSPMILVD KDLFVLADDV ILLIERVVSD SLPHQPLPSK DDKCPQNRTK DGSSGDEFNK DSIERDEKRL MELGRRTIEI
0401: FVLAHIFSRI EVSYQEAVAL KRQEELIREE EAAGQVEHEL KSKRGAAEKE KRAKKKQAKQ KRNSRKGKDK VKDVRCNQGQ ERLQQETPLE ERTSDSFSSG
0501: QVELIIEKID AREDVSETGD DVAEVLQPDL DDRDTSPTNW DTDTSEIHLI TEASGSDVQN GQTEKRSQSV MDDSSSTCST DSVPSAFMSG PYKGNILPNN
0601: NGAQSSPNRR KNHWSRETNN RISLTHGGQI PPETTSVDGH SHDATGSKAS QPELEATGFS FKNEIQHLGK NLARKEEVSS LQKKSTSKDQ VDAESQSSSS
0701: GLGKKPLSTI QQPKHSSVVT TSTAAITAAI TTVEPASSKE APSSSTSQTE KILVLASGSA PVSSSSQSEA QKQNMPLKIN TSHQDNAISR PSSAPLVPAP
0801: RPPASIASTV QAVPLLSRSV SAAGRLGTDP SPSAPSYIPQ SYRNAIIGKT MRARRSDFID ETTSSGQSVS CSQSPSVCLS SASMLPPQAP VRKDQTSVRP
0901: GLTFGCLKPE VIASRITPYQ VQGTVAEEFP HLDIINDLLD DEQNIERAAR GPQHGFNRQY SLPSNLFAAE FGSLGGSGRF DHSDQYYEEG FLGGYGTSAN
1001: PLQGLRDGAL QQMDLSSYSN NHSQLDGLMR NHWPYGNTDP SMLRLGDGDA NTYPYQFRVY RARGGNRYLY HPANGP

Best Arabidopsis Sequence Match ( AT1G04300.1 )
(BLAST)

0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH

Arabidopsis Description

TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.