Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G43560.1 | KRH42680 | AT1G27320.1 | 18642946 |
| AT5G43560.1 | KRH58780 | AT1G27320.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG90366 | Soybean | endoplasmic reticulum, plasma membrane | 94.91 | 88.03 |
| KRH34524 | Soybean | nucleus | 80.16 | 80.02 |
| KRG92287 | Soybean | nucleus | 80.07 | 80.0 |
| PGSC0003DMT400042094 | Potato | cytosol | 27.39 | 76.66 |
| VIT_05s0020g04980.t01 | Wine grape | nucleus | 70.68 | 70.24 |
| Solyc06g053740.2.1 | Tomato | cytosol | 25.55 | 69.95 |
| OQU79503 | Sorghum | nucleus | 26.78 | 67.33 |
| AT5G52330.3 | Thale cress | cytosol | 22.83 | 65.49 |
| CDY10066 | Canola | nucleus | 49.17 | 55.23 |
| CDX86642 | Canola | nucleus | 50.66 | 55.22 |
| CDX89828 | Canola | nucleus | 51.01 | 54.76 |
| AT1G04300.3 | Thale cress | nucleus | 51.98 | 54.71 |
| CDY32539 | Canola | nucleus | 48.29 | 54.67 |
| Bra015302.1-P | Field mustard | nucleus | 50.83 | 54.62 |
| AT5G43560.1 | Thale cress | nucleus | 49.87 | 53.84 |
| CDY18218 | Canola | nucleus | 49.96 | 53.78 |
| Bra032518.1-P | Field mustard | nucleus | 46.88 | 53.72 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 50.4 | 53.35 |
| Os05t0508700-01 | Rice | nucleus | 33.71 | 49.81 |
| TraesCS5B01G071600.1 | Wheat | nucleus | 46.97 | 47.68 |
| TraesCS5D01G072000.1 | Wheat | nucleus | 46.97 | 47.64 |
| HORVU5Hr1G016190.3 | Barley | nucleus | 46.8 | 47.46 |
| TraesCS5A01G060400.1 | Wheat | nucleus | 46.8 | 47.46 |
| EES16279 | Sorghum | nucleus | 46.36 | 47.06 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 51.27 | 41.36 |
| PGSC0003DMT400042093 | Potato | nucleus | 24.06 | 41.02 |
| EES01550 | Sorghum | nucleus | 40.83 | 38.43 |
| Os01t0775300-01 | Rice | cytosol, mitochondrion, nucleus | 42.14 | 36.84 |
| KXG22306 | Sorghum | nucleus | 41.62 | 36.8 |
| TraesCS3D01G310000.1 | Wheat | nucleus | 41.26 | 36.55 |
| TraesCS3A01G321300.2 | Wheat | nucleus | 41.53 | 35.97 |
| TraesCS3B01G343300.2 | Wheat | nucleus | 41.26 | 35.63 |
| TraesCS1B01G339200.1 | Wheat | nucleus | 43.2 | 35.5 |
| TraesCS1D01G327700.1 | Wheat | nucleus | 42.93 | 35.23 |
| TraesCS1A01G325900.1 | Wheat | nucleus | 42.84 | 35.16 |
| HORVU3Hr1G075800.5 | Barley | cytosol, nucleus, plastid | 41.44 | 34.5 |
| HORVU1Hr1G078170.6 | Barley | cytosol | 42.67 | 33.8 |
| Os12t0597200-01 | Rice | cytosol, nucleus, plastid | 8.08 | 29.77 |
| KRG98484 | Soybean | cytosol | 2.72 | 27.93 |
| KRG89898 | Soybean | cytosol | 7.46 | 22.49 |
| KRH17929 | Soybean | cytosol | 8.69 | 22.35 |
| KRG90150 | Soybean | cytosol | 4.13 | 22.17 |
| KRG96334 | Soybean | cytosol | 6.41 | 20.98 |
| KRH68070 | Soybean | cytosol | 6.76 | 20.42 |
| KRH46376 | Soybean | cytosol | 5.97 | 20.18 |
| KRH71763 | Soybean | cytosol | 4.57 | 20.08 |
| KRG96335 | Soybean | cytosol | 6.58 | 19.79 |
| KRH71764 | Soybean | cytosol | 5.97 | 18.89 |
| KRH32747 | Soybean | cytosol | 6.06 | 18.85 |
| KRH32941 | Soybean | cytosol | 4.74 | 18.82 |
| KRG96333 | Soybean | cytosol | 6.67 | 18.54 |
| KRH73403 | Soybean | nucleus | 16.86 | 17.17 |
| KRH14719 | Soybean | nucleus | 16.86 | 17.17 |
| KRH33402 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 15.45 | 15.43 |
| KRG98483 | Soybean | cytosol | 3.34 | 15.32 |
| KRG89895 | Soybean | nucleus | 9.31 | 14.15 |
| KRH17931 | Soybean | mitochondrion, nucleus | 8.34 | 14.03 |
| KRG90154 | Soybean | cytosol | 2.02 | 12.71 |
| KRG90152 | Soybean | cytosol | 8.52 | 12.37 |
| KRH71762 | Soybean | cytosol | 2.02 | 12.11 |
| KRH61745 | Soybean | nucleus | 8.69 | 10.11 |
| KRH33457 | Soybean | cytosol | 1.23 | 9.59 |
| KRH52412 | Soybean | nucleus | 12.47 | 8.46 |
| KRH16103 | Soybean | nucleus | 7.99 | 8.43 |
| KRH61900 | Soybean | cytosol, mitochondrion, nucleus | 7.9 | 8.21 |
| KRH52561 | Soybean | cytosol | 7.99 | 8.15 |
| KRH04994 | Soybean | nucleus | 7.64 | 8.05 |
| KRH61744 | Soybean | cytosol | 3.42 | 6.08 |
Protein Annotations
| EntrezGene:100820160 | Gene3D:2.60.210.10 | MapMan:22.5.1.6 | EMBL:ACUP02006081 | EnsemblPlantsGene:GLYMA_10G008700 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | UniProt:I1L7K3 | InterPro:IPR002083 | InterPro:IPR008974 | EnsemblPlants:KRH31732 |
| ProteinID:KRH31732 | ProteinID:KRH31732.1 | InterPro:MATH/TRAF_dom | PFAM:PF00917 | PFscan:PS50144 | PANTHER:PTHR45001 |
| SMART:SM00061 | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI000233C377 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr10:-:852398..864897
Molecular Weight (calculated)
126816.0 Da
IEP (calculated)
6.167
GRAVY (calculated)
-0.727
Length
1139 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAGISSEESG VGKSAEGTFS GQRCQSGEAL AEWRSSEQVE NGTPSTSPPY WDTDDDDDGP KPSELYGRYT WKIENFSQIT KRELRSNAFE VGSYKWYILI
0101: YPQGCDVCNH LSLFLCVANH DKLLPGWSHF AQFTIAVVNK DPKKSKYSDT LHRFWKKEHD WGWKKFMELS KVYDGFVDAS DNLIIKAQVQ VIREKADRPF
0201: RCLDCQYRRE LVRVYLTNVE QICRRFVEER RSKLGKLIED KARWSSFCTF WREIDQTSRR RMSREKTDVI LKVVVKHFFI EKEVTSTLVM DSLYSGLKAL
0301: EGQNKCKKGR VKLLDAEEMP APIVRAEKDM FVLVDDVLLL LERAAIEPLP PKDEKGPQNR TKDGNSGEDF SKDSIERDER RLTELGRRTL EIFVLAHIFS
0401: NKIEVSYQEA VALKRQEELI REEEAAWLAE CEQKAKRGNE REKKSKKKQA KQKRNNRKGK DKGREERPIV AVYDKQQHNP ADEKKDSNME EVQALDEKLD
0501: ALEVVSDVSD SVDGVGEALQ LDSEDRDVSL VNWDTDASEV HPPTEASSNG IGSLSSVQNG MAEKRSSSAM DDSSSTCSTD SLPSMVMNDH YKGNSFLNYK
0601: VQKSPNRGKN QVKASCNVGS WTTEMDSQPS GSAADAVDVN ESGSSKLGGS EPEGAVLCLQ DRLKWLDHQV IRKEEDLPSL QKKQSIKDQV SIERTVDNES
0701: LPKENKSAVP SSSSSPPRNL PVQMKSENQT RVTGDPVHAR KTSFGTSQST DKEVSSSSTS VSQVTVGPKT EIQKASTPRL TERSMAQVAM LSRPSSAPLV
0801: PGVPRPTAAV VSMVQTAPLL ARSVSATARL GPDPSPATHS YVPQSYRNAI MGNPVVSTAA SLPHSSSSSG VNPSPGYSQP PMVSSPLFIS RSSDKMDSNT
0901: SLSDVPFGMI TRDVLQNGPN WIDSSQREAG RSMPYEPPSR LNDAQNLDLF RPIDSRSLGN ITSEFPACTS KHQNQGGLVD EFPHLDIIND LLDEPREHGI
1001: GKASRASSVF YSLNDGPQLL NRQFTFPGDL GTDDDLGSST SSCRFERSRS YHDAGFQQGY STSGRHYDSL QDYVPQASTL SYGNGKVDGM IPNQWQVAGS
1101: DLSYLGMRNT ENSYSYYQDY SNMACGVNGY TVFRPSNGP
0101: YPQGCDVCNH LSLFLCVANH DKLLPGWSHF AQFTIAVVNK DPKKSKYSDT LHRFWKKEHD WGWKKFMELS KVYDGFVDAS DNLIIKAQVQ VIREKADRPF
0201: RCLDCQYRRE LVRVYLTNVE QICRRFVEER RSKLGKLIED KARWSSFCTF WREIDQTSRR RMSREKTDVI LKVVVKHFFI EKEVTSTLVM DSLYSGLKAL
0301: EGQNKCKKGR VKLLDAEEMP APIVRAEKDM FVLVDDVLLL LERAAIEPLP PKDEKGPQNR TKDGNSGEDF SKDSIERDER RLTELGRRTL EIFVLAHIFS
0401: NKIEVSYQEA VALKRQEELI REEEAAWLAE CEQKAKRGNE REKKSKKKQA KQKRNNRKGK DKGREERPIV AVYDKQQHNP ADEKKDSNME EVQALDEKLD
0501: ALEVVSDVSD SVDGVGEALQ LDSEDRDVSL VNWDTDASEV HPPTEASSNG IGSLSSVQNG MAEKRSSSAM DDSSSTCSTD SLPSMVMNDH YKGNSFLNYK
0601: VQKSPNRGKN QVKASCNVGS WTTEMDSQPS GSAADAVDVN ESGSSKLGGS EPEGAVLCLQ DRLKWLDHQV IRKEEDLPSL QKKQSIKDQV SIERTVDNES
0701: LPKENKSAVP SSSSSPPRNL PVQMKSENQT RVTGDPVHAR KTSFGTSQST DKEVSSSSTS VSQVTVGPKT EIQKASTPRL TERSMAQVAM LSRPSSAPLV
0801: PGVPRPTAAV VSMVQTAPLL ARSVSATARL GPDPSPATHS YVPQSYRNAI MGNPVVSTAA SLPHSSSSSG VNPSPGYSQP PMVSSPLFIS RSSDKMDSNT
0901: SLSDVPFGMI TRDVLQNGPN WIDSSQREAG RSMPYEPPSR LNDAQNLDLF RPIDSRSLGN ITSEFPACTS KHQNQGGLVD EFPHLDIIND LLDEPREHGI
1001: GKASRASSVF YSLNDGPQLL NRQFTFPGDL GTDDDLGSST SSCRFERSRS YHDAGFQQGY STSGRHYDSL QDYVPQASTL SYGNGKVDGM IPNQWQVAGS
1101: DLSYLGMRNT ENSYSYYQDY SNMACGVNGY TVFRPSNGP
0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.