Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015302.1-P | Field mustard | nucleus | 77.08 | 78.68 |
| CDX89828 | Canola | nucleus | 77.08 | 78.61 |
| CDX86642 | Canola | nucleus | 75.88 | 78.56 |
| CDY18218 | Canola | nucleus | 76.71 | 78.45 |
| CDY10066 | Canola | nucleus | 72.92 | 77.81 |
| CDY32539 | Canola | nucleus | 72.27 | 77.73 |
| Bra032518.1-P | Field mustard | nucleus | 70.79 | 77.06 |
| AT5G52330.3 | Thale cress | cytosol | 27.45 | 74.81 |
| PGSC0003DMT400042094 | Potato | cytosol | 25.69 | 68.3 |
| AT5G43560.1 | Thale cress | nucleus | 62.57 | 64.17 |
| OQU79503 | Sorghum | nucleus | 26.06 | 62.25 |
| VIT_05s0020g04980.t01 | Wine grape | nucleus | 55.91 | 52.79 |
| KRH31732 | Soybean | nucleus | 54.71 | 51.98 |
| KRG92287 | Soybean | nucleus | 53.6 | 50.88 |
| KRH34524 | Soybean | nucleus | 53.23 | 50.48 |
| KRG90366 | Soybean | endoplasmic reticulum, plasma membrane | 54.44 | 47.96 |
| Solyc03g005430.2.1 | Tomato | nucleus | 50.0 | 47.08 |
| Solyc06g053750.2.1 | Tomato | nucleus | 48.52 | 46.13 |
| Os05t0508700-01 | Rice | nucleus | 32.53 | 45.66 |
| Solyc09g089560.2.1 | Tomato | nucleus | 46.58 | 45.65 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 44.09 | 44.33 |
| AT4G16045.1 | Thale cress | cytosol | 15.43 | 43.72 |
| EES16279 | Sorghum | nucleus | 42.88 | 41.35 |
| TraesCS5D01G072000.1 | Wheat | nucleus | 42.24 | 40.69 |
| TraesCS5B01G071600.1 | Wheat | nucleus | 42.14 | 40.64 |
| HORVU5Hr1G016190.3 | Barley | nucleus | 42.14 | 40.61 |
| TraesCS5A01G060400.1 | Wheat | nucleus | 42.14 | 40.61 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 43.16 | 33.07 |
| KXG22306 | Sorghum | nucleus | 39.19 | 32.92 |
| EES01550 | Sorghum | nucleus | 36.51 | 32.64 |
| Os01t0775300-01 | Rice | cytosol, mitochondrion, nucleus | 38.82 | 32.23 |
| TraesCS3D01G310000.1 | Wheat | nucleus | 38.17 | 32.12 |
| TraesCS3B01G343300.2 | Wheat | nucleus | 38.45 | 31.54 |
| TraesCS3A01G321300.2 | Wheat | nucleus | 38.17 | 31.41 |
| TraesCS1B01G339200.1 | Wheat | nucleus | 39.74 | 31.02 |
| TraesCS1A01G325900.1 | Wheat | nucleus | 39.65 | 30.91 |
| TraesCS1D01G327700.1 | Wheat | nucleus | 39.56 | 30.84 |
| HORVU3Hr1G075800.5 | Barley | cytosol, nucleus, plastid | 38.54 | 30.48 |
| HORVU1Hr1G078170.6 | Barley | cytosol | 39.65 | 29.83 |
| PGSC0003DMT400042093 | Potato | nucleus | 17.56 | 28.44 |
| Os12t0597200-01 | Rice | cytosol, nucleus, plastid | 6.75 | 23.62 |
| AT3G11910.1 | Thale cress | cytosol | 14.88 | 14.44 |
| AT5G06600.1 | Thale cress | cytosol | 14.88 | 14.43 |
| AT2G25330.1 | Thale cress | nucleus | 6.65 | 10.39 |
| AT3G49600.1 | Thale cress | cytosol | 7.39 | 7.5 |
| AT2G25320.3 | Thale cress | nucleus, plastid | 9.98 | 6.45 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:22.5.1.6 | EntrezGene:839551 | UniProt:A8MQL1 | ProteinID:AAB70446.1 | ProteinID:AEE27681.1 |
| ProteinID:AEE27682.1 | EMBL:AK229458 | ArrayExpress:AT1G04300 | EnsemblPlantsGene:AT1G04300 | RefSeq:AT1G04300 | TAIR:AT1G04300 |
| RefSeq:AT1G04300-TAIR-G | EnsemblPlants:AT1G04300.3 | TAIR:AT1G04300.3 | Unigene:At.24558 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0005886 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0045087 | GO:GO:1905037 | InterPro:IPR002083 |
| InterPro:IPR008974 | InterPro:MATH/TRAF_dom | RefSeq:NP_001077454.1 | RefSeq:NP_001077455.1 | PFAM:PF00917 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50144 | PANTHER:PTHR45001 | SMART:SM00061 |
| SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI0000162C49 | SEG:seg | : | : |
Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
Coordinates
chr1:-:1148659..1154652
Molecular Weight (calculated)
120450.0 Da
IEP (calculated)
6.327
GRAVY (calculated)
-0.782
Length
1082 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGSFA ILEAGWSQFA QFTISVLSQD LKKSKFSDTL HRFWKKEHDW GWKKFMELPK LKDGFIDESG CLTIEAKVQV
0201: IRERVDRPFR CLDCGYRREL VRVYFQNVEQ ICRRFVEEKR SKLGRLIEDK ARWTSFGVFW LGMDQNSRRR MCREKVDVIL KGVVKHFFVE KEVSSTLVMD
0301: SLYSGLKALE GQTKNMKARS RLLDAKQLPA PIVSVDKDMF VLVDDVLLLL ERAALEPLPP KDEKGRQNRT KDGNDGEEVN KEADERDERR LTELGRRTVE
0401: IFILSHIFST KIEVAHQEAI ALKRQEELIR EEEEAWLAET EQRAKRGAAE REKKSKKKQA KQKRNKNKGK DKRKEEKVSF ATHAKDLEEN QNQNQNDEEE
0501: KDSVTEKAQS SAEKPDTLGD VSDISDSVDG SADILQPDLE DRDSSSVLWD TDALEIHPPS SEGSSRGRGI SISTPNGITE GKSHSTMDDS SSTCSNDSIR
0601: SGVTNGSYQG NSLNFRNQKS PNKGKNQQVK AMTDAHSLAS ETDDQPSTLG TDPKGQNYSS EASNVGESDW VVVSHIQEPE GSRNRIPVGR ERKTVQSIVN
0701: SVDMDRPKEK STAVLSSPRN VAKNPSPLTQ TKPEKKSIST ADGIPNRKVL ATGPPSSSQV VLPSDIQSQT VGLRADMQKL SAPKQPPATT ISRPSSAPII
0801: PAMRPSPITV SSSVQTTTSL PRSVSSAGRL GPDPSLHNQQ TYTPQSYKNA IVGNSLGSSS SSFNHHPSSH GVVPTTLPSS SYSQAPTSSY QSSFPYSQDG
0901: LLWTGRSPSS VNMGMYNNTY SPAVTSNRSL NHMDVQIAQQ QAQSMMTDEF PHLDIINDLL EDEQCSNMVY NGSIFNPQPQ VFNGQYSSYH GELLSGGRTR
1001: SFGEEGLHYM ARGPYGTDGM MPRQWQMTNM DLSLPAMRSN GMEDGTSSAA NYHHSYFGLD ASNPSFTSGI NGYTEFRPSN GH
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGSFA ILEAGWSQFA QFTISVLSQD LKKSKFSDTL HRFWKKEHDW GWKKFMELPK LKDGFIDESG CLTIEAKVQV
0201: IRERVDRPFR CLDCGYRREL VRVYFQNVEQ ICRRFVEEKR SKLGRLIEDK ARWTSFGVFW LGMDQNSRRR MCREKVDVIL KGVVKHFFVE KEVSSTLVMD
0301: SLYSGLKALE GQTKNMKARS RLLDAKQLPA PIVSVDKDMF VLVDDVLLLL ERAALEPLPP KDEKGRQNRT KDGNDGEEVN KEADERDERR LTELGRRTVE
0401: IFILSHIFST KIEVAHQEAI ALKRQEELIR EEEEAWLAET EQRAKRGAAE REKKSKKKQA KQKRNKNKGK DKRKEEKVSF ATHAKDLEEN QNQNQNDEEE
0501: KDSVTEKAQS SAEKPDTLGD VSDISDSVDG SADILQPDLE DRDSSSVLWD TDALEIHPPS SEGSSRGRGI SISTPNGITE GKSHSTMDDS SSTCSNDSIR
0601: SGVTNGSYQG NSLNFRNQKS PNKGKNQQVK AMTDAHSLAS ETDDQPSTLG TDPKGQNYSS EASNVGESDW VVVSHIQEPE GSRNRIPVGR ERKTVQSIVN
0701: SVDMDRPKEK STAVLSSPRN VAKNPSPLTQ TKPEKKSIST ADGIPNRKVL ATGPPSSSQV VLPSDIQSQT VGLRADMQKL SAPKQPPATT ISRPSSAPII
0801: PAMRPSPITV SSSVQTTTSL PRSVSSAGRL GPDPSLHNQQ TYTPQSYKNA IVGNSLGSSS SSFNHHPSSH GVVPTTLPSS SYSQAPTSSY QSSFPYSQDG
0901: LLWTGRSPSS VNMGMYNNTY SPAVTSNRSL NHMDVQIAQQ QAQSMMTDEF PHLDIINDLL EDEQCSNMVY NGSIFNPQPQ VFNGQYSSYH GELLSGGRTR
1001: SFGEEGLHYM ARGPYGTDGM MPRQWQMTNM DLSLPAMRSN GMEDGTSSAA NYHHSYFGLD ASNPSFTSGI NGYTEFRPSN GH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.