Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32539 | Canola | nucleus | 98.89 | 97.71 |
| Bra015302.1-P | Field mustard | nucleus | 77.97 | 73.11 |
| AT1G04300.3 | Thale cress | nucleus | 77.06 | 70.79 |
| PGSC0003DMT400042094 | Potato | cytosol | 25.25 | 61.67 |
| OQU79503 | Sorghum | nucleus | 25.75 | 56.51 |
| Bra023279.1-P | Field mustard | cytosol | 18.91 | 53.87 |
| Bra010174.1-P | Field mustard | cytosol | 10.97 | 49.55 |
| VIT_05s0020g04980.t01 | Wine grape | nucleus | 54.73 | 47.47 |
| KRH31732 | Soybean | nucleus | 53.72 | 46.88 |
| KRG92287 | Soybean | nucleus | 53.62 | 46.75 |
| KRH34524 | Soybean | nucleus | 52.92 | 46.1 |
| KRG90366 | Soybean | endoplasmic reticulum, plasma membrane | 53.52 | 43.32 |
| Solyc03g005430.2.1 | Tomato | nucleus | 49.6 | 42.91 |
| Os05t0508700-01 | Rice | nucleus | 32.9 | 42.41 |
| Solyc06g053750.2.1 | Tomato | nucleus | 48.39 | 42.27 |
| Bra033684.1-P | Field mustard | nucleus | 38.73 | 41.53 |
| Solyc09g089560.2.1 | Tomato | nucleus | 45.67 | 41.12 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 43.96 | 40.61 |
| EES16279 | Sorghum | nucleus | 42.66 | 37.79 |
| TraesCS5A01G060400.1 | Wheat | nucleus | 41.55 | 36.78 |
| TraesCS5D01G072000.1 | Wheat | nucleus | 41.45 | 36.69 |
| TraesCS5B01G071600.1 | Wheat | nucleus | 41.35 | 36.63 |
| HORVU5Hr1G016190.3 | Barley | nucleus | 41.25 | 36.51 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 43.86 | 30.88 |
| Os01t0775300-01 | Rice | cytosol, mitochondrion, nucleus | 40.24 | 30.7 |
| KXG22306 | Sorghum | nucleus | 39.74 | 30.67 |
| EES01550 | Sorghum | nucleus | 37.12 | 30.5 |
| TraesCS3D01G310000.1 | Wheat | nucleus | 37.73 | 29.16 |
| TraesCS1B01G339200.1 | Wheat | nucleus | 40.54 | 29.08 |
| TraesCS1A01G325900.1 | Wheat | nucleus | 40.54 | 29.03 |
| TraesCS1D01G327700.1 | Wheat | nucleus | 40.34 | 28.89 |
| TraesCS3B01G343300.2 | Wheat | nucleus | 38.33 | 28.89 |
| TraesCS3A01G321300.2 | Wheat | nucleus | 37.73 | 28.52 |
| HORVU3Hr1G075800.5 | Barley | cytosol, nucleus, plastid | 38.53 | 28.0 |
| HORVU1Hr1G078170.6 | Barley | cytosol | 40.24 | 27.82 |
| PGSC0003DMT400042093 | Potato | nucleus | 18.11 | 26.95 |
| Os12t0597200-01 | Rice | cytosol, nucleus, plastid | 6.84 | 22.01 |
| Bra009210.1-P | Field mustard | cytosol | 15.09 | 13.64 |
| Bra028727.1-P | Field mustard | cytosol | 15.49 | 13.53 |
| Bra005900.1-P | Field mustard | cytosol | 15.09 | 13.45 |
| Bra038685.1-P | Field mustard | cytosol | 14.59 | 13.16 |
| Bra001426.1-P | Field mustard | cytosol | 14.39 | 12.86 |
| Bra034802.1-P | Field mustard | cytosol | 13.88 | 12.38 |
| Bra019603.1-P | Field mustard | cytosol | 7.34 | 7.12 |
| Bra017972.1-P | Field mustard | cytosol | 7.24 | 6.92 |
| Bra007802.1-P | Field mustard | nucleus, plastid | 10.16 | 6.07 |
| Bra034251.1-P | Field mustard | nucleus | 9.96 | 6.01 |
| Bra041162.1-P | Field mustard | cytosol, nucleus, plastid | 0.91 | 4.52 |
Protein Annotations
| EnsemblPlants:Bra032518.1 | EnsemblPlants:Bra032518.1-P | EnsemblPlantsGene:Bra032518 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil |
| PANTHER:PTHR45001 | PFAM:PF00917 | PFscan:PS50144 | SEG:seg | SUPFAM:SSF49599 | UniParc:UPI000254361F |
| UniProt:M4EUN6 | MapMan:22.5.1.6 | : | : | : | : |
Description
AT1G04300 (E=5e-149) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT5G43560.2); Has 15192 Blast hits to 9607 proteins in 677 species: Archae - 16; Bacteria - 1260; Metazoa - 5600; Fungi - 1932; Plants - 456; Viruses - 109; Other Eukaryotes - 5819 (source: NCBI BLink).
Coordinates
chrA09:+:36408397..36412964
Molecular Weight (calculated)
110588.0 Da
IEP (calculated)
6.564
GRAVY (calculated)
-0.740
Length
994 amino acids
Sequence
(BLAST)
(BLAST)
001: MAETVDEDSG VGRSVEASTN GQYSLSGEAL SQWRCSTQVE NGTPSTSPSY WDTDDDDDYG LRPSQLFVKH KWKIEKFSEI KKRELRSSVF EAGGYKWYIL
101: IYPQGCDVWH HLSLFLCVAN HEKLLPDTLH RFWKKEHDWG WKKFIESQKL NDGFVDDSDC LTIEAQVQVI RERVDRPFRC LYRGYRRELV RVYLTNVVQN
201: CRLFVEEKRS KLERLIEDKA RWTSFGVFWL GMDQNSRRRM STEKMDVILK GVVKQFFIEK EVIATLVMDF LYSGLKALEG QTKSKKSKPR SLDPKELPAP
301: LVTVDKDMFV LADDVLLLLE RAALEPLPPN SDKGPRNRTK DVNDGEDDNN EAIERDERRL TELGRRTVEI FVLSHIFNSK IEVAYREAVA LKRQEELIRE
401: EEEEWLAETE QRAKRGAAER EKKSKKKQAK QKRNRNRGKD KRKEEKATFA THEKDLEEEK DSVAEKAESL VEKTDTLGDV SDISDSVDGS AEILHPDLED
501: GDSSSAHWDT AALGSSREND ISISAPNGIA ERKNQSNMED SSSTCSNDSI RSGFTNGSSY TGNALIFRNQ NSPNKGKNQP RSQNSTSESG WVVVSHNQEP
601: ESSRNRSPVG KVQNVAQIIV NSVDMDRPKE KSAAVLTSPR TAAKNPSPLT QPKLEKKNVS VAPNKKVMPA SGPPSSNQVV PPSSDIGLRA DVQKIPAPKQ
701: PATTTITRPS SAPVIPAMRP APIVVSSAQP TTSFPRSVSS AGRLGPDSSL HNQQTYTPQS YKHAIVGNSP GSSSSFNLHP TTLPSASYSQ TPTSSYQSSF
801: PFSQDGLFLG GRSLNSVNMG MNNPYAPTVT SNSSRQQAQN LMTDEFPHLD IINDLLEDEN CSNMVFNGSM FSSQPQMLDR QYSYHGGGGA ADFGISGELL
901: SGGRSRSFGE EGYHYMPHNG LSAAGGPYAA DGLIPTQWQM ANVDLSLLGM RNNNSNLGDT TAYHHNAYFG LDSSNPSFSS GVNGYTEFRP SNGH
101: IYPQGCDVWH HLSLFLCVAN HEKLLPDTLH RFWKKEHDWG WKKFIESQKL NDGFVDDSDC LTIEAQVQVI RERVDRPFRC LYRGYRRELV RVYLTNVVQN
201: CRLFVEEKRS KLERLIEDKA RWTSFGVFWL GMDQNSRRRM STEKMDVILK GVVKQFFIEK EVIATLVMDF LYSGLKALEG QTKSKKSKPR SLDPKELPAP
301: LVTVDKDMFV LADDVLLLLE RAALEPLPPN SDKGPRNRTK DVNDGEDDNN EAIERDERRL TELGRRTVEI FVLSHIFNSK IEVAYREAVA LKRQEELIRE
401: EEEEWLAETE QRAKRGAAER EKKSKKKQAK QKRNRNRGKD KRKEEKATFA THEKDLEEEK DSVAEKAESL VEKTDTLGDV SDISDSVDGS AEILHPDLED
501: GDSSSAHWDT AALGSSREND ISISAPNGIA ERKNQSNMED SSSTCSNDSI RSGFTNGSSY TGNALIFRNQ NSPNKGKNQP RSQNSTSESG WVVVSHNQEP
601: ESSRNRSPVG KVQNVAQIIV NSVDMDRPKE KSAAVLTSPR TAAKNPSPLT QPKLEKKNVS VAPNKKVMPA SGPPSSNQVV PPSSDIGLRA DVQKIPAPKQ
701: PATTTITRPS SAPVIPAMRP APIVVSSAQP TTSFPRSVSS AGRLGPDSSL HNQQTYTPQS YKHAIVGNSP GSSSSFNLHP TTLPSASYSQ TPTSSYQSSF
801: PFSQDGLFLG GRSLNSVNMG MNNPYAPTVT SNSSRQQAQN LMTDEFPHLD IINDLLEDEN CSNMVFNGSM FSSQPQMLDR QYSYHGGGGA ADFGISGELL
901: SGGRSRSFGE EGYHYMPHNG LSAAGGPYAA DGLIPTQWQM ANVDLSLLGM RNNNSNLGDT TAYHHNAYFG LDSSNPSFSS GVNGYTEFRP SNGH
0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.