Factsheet for Bra034802.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G11910.1	Thale cress	cytosol	91.39	91.39
Bra038685.1-P	Field mustard	cytosol	89.33	90.38
Bra001426.1-P	Field mustard	cytosol	89.42	89.66
Bra009210.1-P	Field mustard	cytosol	86.01	87.18
Bra005900.1-P	Field mustard	cytosol	86.64	86.64
CDY72484	Canola	cytosol	12.74	86.59
Bra028727.1-P	Field mustard	cytosol	87.0	85.24
VIT_08s0032g00600.t01	Wine grape	cytosol	83.14	83.06
Solyc10g081610.1.1	Tomato	cytosol, extracellular, nucleus	80.63	80.12
PGSC0003DMT400072539	Potato	cytosol	80.45	79.95
Os07t0163800-01	Rice	cytosol, plasma membrane	19.82	75.17
TraesCS3A01G176700.1	Wheat	cytosol	5.38	30.77
Bra041162.1-P	Field mustard	cytosol, nucleus, plastid	3.77	21.11
Bra023279.1-P	Field mustard	cytosol	5.74	18.34
Bra019603.1-P	Field mustard	cytosol	15.07	16.37
Bra017972.1-P	Field mustard	cytosol	15.16	16.25
Bra015302.1-P	Field mustard	nucleus	13.54	14.25
Bra010174.1-P	Field mustard	cytosol	2.78	14.09
Bra032518.1-P	Field mustard	nucleus	12.38	13.88
Bra033684.1-P	Field mustard	nucleus	11.39	13.7
Bra007802.1-P	Field mustard	nucleus, plastid	16.32	10.94
Bra034251.1-P	Field mustard	nucleus	16.05	10.87

Protein Annotations

MapMan:14.6.2.3	MapMan:19.2.3.1.1.5	Gene3D:2.60.210.10	Gene3D:3.10.20.90	Gene3D:3.90.70.10	EnsemblPlantsGene:Bra034802
EnsemblPlants:Bra034802.1	EnsemblPlants:Bra034802.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR002083
InterPro:IPR008974	InterPro:IPR028889	UniProt:M4F156	InterPro:MATH/TRAF_dom	PFAM:PF00443	PFAM:PF00917
PFAM:PF12436	PFAM:PF14533	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50144	PFscan:PS50235
PANTHER:PTHR24006	PANTHER:PTHR24006:SF565	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SMART:SM00061	SUPFAM:SSF49599
SUPFAM:SSF54001	InterPro:TRAF-like	UniParc:UPI0002547553	InterPro:USP7_ICP0-binding_dom	InterPro:USP_C	InterPro:USP_CS
InterPro:USP_dom	SEG:seg	:	:	:	:

Description

AT3G11910 (E=0.0) UBP13 | UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13); ubiquitin thiolesterase/ ubiquitin-specific protease

Coordinates

chrA05:+:21475323..21484054

Molecular Weight (calculated)

130413.0 Da

IEP (calculated)

5.315

GRAVY (calculated)

-0.646

Length

1115 amino acids

Sequence
(BLAST)

0001: MVTPTPLDQQ EDDEMLVPHS DVVEGPQPME VAQPEAAAAT AAESLPVEEP PTMKYTWTIP GFTRLNTRKH YSEVFVVGGY KWRVLIFPKG NNVDNLSMYL
0101: DVADAANLPY GWSRFSQFGL AIVNQINSSY SIRKESQHQF NSRESDWGFT SFMPLSELYD PTRGYLLNDT VVIEAEVAVR KVLDYWSYDS KKETGFVGLK
0201: NQGATCYMNS LLQTLYHIPY FRKAVYHMPT TENDAPTASI PLALQSLFYK LQYNDTSVAT KELTKSFGWD TYDSFMQHDV QELNRVLCEK PEDKMKGTVV
0301: EGTIQKLFEG HHMNYIECIN VDYKSTRKES FYDLQLDVKG CKDVYESFDK YVEVERLEGD NKYHAEGHDL QDAKKGVLFI EFPPVLQLQL KRFEYDFMRD
0401: TMVKINDRYE FPLELDLDRD NRKYLSPDAD KSVRNLYTLH SVLVHSGGVH GGHYYAFIRP TLSDQWYKFD DERVTKEDVK RALEEQYGGE EELPQNNPGF
0501: NNPPFKFTKY SNAYMLVYIR ESDKDKIICN VDEKDIAEHL RVRLKKEQEE KEEKRKYKAQ AHLFTTIKVA RDEDITEQIG KNIYFDLVDH EKIKSFRIQK
0601: QTPFQLFKEE VAKEFGVPVE LQRFWIWAKR QNHTYRPNRP LLPHEELQTV ELLREACNKT NNAELKLFLE IERGPEERPI PPPDKSSEDI LLFFKLYDPE
0701: NAILRYVGRL MVKNSSKPMD IVGQLNQMAG FAPDEEIELF EEIKFEPCVM CEQLDKKISF RLSQIEDGDI ICFQKPLSIQ ENECPYPDVP SFLAYVQNRE
0801: VVRFRTLEKT KEDEFTMELS KLHTYDDVVQ RLAEKLGLDD PSKIRLTSHN CYSQQPKPQP IKYRGVDRLS DMLAHYNQTS DILYYEVLDI PLPELQGLKS
0901: LKVAFHHATK DEVVIHNIRL PKQSTVGDVI NELKTKVELS HPDAELRLLE VFFHKIYKIF SSTERIENIN DQYWTLRAEE IPEEEKNIGP SDRLVHVYHF
1001: TKEAGQNQAQ VKNCGEPFFL VIHEGETLEE IKSRIQKKLR IPDEDFAKWK FASFSMGRPD YLQDTDVVYD RFQRKDVYGA WEQYLGLEHV DNAPKRAYAA
1101: NQNRHAYEKP VRIYN

Best Arabidopsis Sequence Match ( AT3G11910.1 )
(BLAST)

0001: MTMMTPPPLD QQEDEEMLVP NPDLVEGPQP MEVAQTDPAA TAVENPPPED PPSLKFTWTI PMFTRLNTRK HYSDVFVVGG YKWRILIFPK GNNVDHLSMY
0101: LDVADAANLP YGWSRYSQFS LAVVNQVNNR YSIRKETQHQ FNARESDWGF TSFMPLSELY EPTRGYLVND TVLIEAEVAV RKVLDYWSYD SKKETGFVGL
0201: KNQGATCYMN SLLQTLYHIP YFRKAVYHMP TTENDAPTAS IPLALQSLFY KLQYNDTSVA TKELTKSFGW DTYDSFMQHD VQELNRVLCE KLEDKMKGTV
0301: VEGTIQKLFE GHHMNYIECI NVDYKSTRKE SFYDLQLDVK GCKDVYASFD KYVEVERLEG DNKYHAEGHD LQDAKKGVLF IDFPPVLQLQ LKRFEYDFMR
0401: DTMVKINDRY EFPLQLDLDR EDGRYLSPDA DKSVRNLYTL HSVLVHSGGV HGGHYYAFIR PTLSDQWYKF DDERVTKEDV KRALEEQYGG EEELPQNNPG
0501: FNNPPFKFTK YSNAYMLVYI RESDKDKIIC NVDEKDIAEH LRVRLKKEQE EKEDKRKYKA QAHLFTTIKV ARDDDITEQI GKNIYFDLVD HEKVRSFRIQ
0601: KQTPFQQFKE EVAKEFGVPV QLQRFWIWAK RQNHTYRPNR PLSPNEELQT VGQIREASNK ANNAELKLFL EIERGPDDLP IPPPEKTSED ILLFFKLYDP
0701: ENAVLRYVGR LMVKSSSKPM DIVGQLNKMA GFAPDEEIEL FEEIKFEPCV MCEQIDKKTS FRLCQIEDGD IICYQKPLSI EESEFRYPDV PSFLEYVQNR
0801: ELVRFRTLEK PKEDEFTMEL SKLHTYDDVV ERVAEKLGLD DPSKLRLTSH NCYSQQPKPQ PIKYRGVDHL SDMLVHYNQT SDILYYEVLD IPLPELQGLK
0901: TLKVAFHSAT KDEVIIHNIR LPKQSTVGDV INELKTKVEL SHQDAELRLL EVFFHKIYKI FPSTERIENI NDQYWTLRAE EIPEEEKNIG PNDRLIHVYH
1001: FTKEAGQNQQ VQNFGEPFFL VIHEGETLEE IKTRIQKKLH VPDEDFAKWK FASFSMGRPD YLLDTDVVYN RFQRRDVYGA WEQYLGLEHI DNAPKRAYAA
1101: NQNRHAYEKP VKIYN

Arabidopsis Description

UBP13UBP13 [Source:UniProtKB/TrEMBL;Acc:A0A178VEE0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.