Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89828 | Canola | nucleus | 99.62 | 99.53 |
| Bra032518.1-P | Field mustard | nucleus | 73.11 | 77.97 |
| AT1G04300.3 | Thale cress | nucleus | 78.68 | 77.08 |
| PGSC0003DMT400042094 | Potato | cytosol | 25.57 | 66.58 |
| OQU79503 | Sorghum | nucleus | 26.51 | 62.03 |
| Bra023279.1-P | Field mustard | cytosol | 18.58 | 56.45 |
| VIT_05s0020g04980.t01 | Wine grape | nucleus | 55.75 | 51.57 |
| Bra010174.1-P | Field mustard | cytosol | 10.66 | 51.36 |
| KRH31732 | Soybean | nucleus | 54.62 | 50.83 |
| KRG92287 | Soybean | nucleus | 54.34 | 50.53 |
| KRH34524 | Soybean | nucleus | 53.49 | 49.69 |
| Solyc03g005430.2.1 | Tomato | nucleus | 50.85 | 46.91 |
| KRG90366 | Soybean | endoplasmic reticulum, plasma membrane | 54.25 | 46.82 |
| Bra033684.1-P | Field mustard | nucleus | 39.91 | 45.63 |
| Solyc06g053750.2.1 | Tomato | nucleus | 48.4 | 45.08 |
| Os05t0508700-01 | Rice | nucleus | 32.74 | 45.01 |
| Solyc09g089560.2.1 | Tomato | nucleus | 46.7 | 44.84 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 45.38 | 44.7 |
| EES16279 | Sorghum | nucleus | 44.81 | 42.34 |
| TraesCS5D01G072000.1 | Wheat | nucleus | 43.68 | 41.23 |
| TraesCS5A01G060400.1 | Wheat | nucleus | 43.68 | 41.23 |
| HORVU5Hr1G016190.3 | Barley | nucleus | 43.68 | 41.23 |
| TraesCS5B01G071600.1 | Wheat | nucleus | 43.58 | 41.18 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 44.53 | 33.43 |
| EES01550 | Sorghum | nucleus | 37.74 | 33.06 |
| KXG22306 | Sorghum | nucleus | 39.91 | 32.84 |
| Os01t0775300-01 | Rice | cytosol, mitochondrion, nucleus | 39.72 | 32.31 |
| TraesCS3D01G310000.1 | Wheat | nucleus | 38.49 | 31.73 |
| TraesCS3B01G343300.2 | Wheat | nucleus | 38.96 | 31.31 |
| TraesCS1B01G339200.1 | Wheat | nucleus | 40.85 | 31.24 |
| TraesCS1D01G327700.1 | Wheat | nucleus | 40.75 | 31.12 |
| TraesCS1A01G325900.1 | Wheat | nucleus | 40.66 | 31.05 |
| TraesCS3A01G321300.2 | Wheat | nucleus | 38.49 | 31.03 |
| HORVU3Hr1G075800.5 | Barley | cytosol, nucleus, plastid | 39.06 | 30.26 |
| HORVU1Hr1G078170.6 | Barley | cytosol | 40.09 | 29.55 |
| PGSC0003DMT400042093 | Potato | nucleus | 17.45 | 27.69 |
| Os12t0597200-01 | Rice | cytosol, nucleus, plastid | 7.83 | 26.86 |
| Bra009210.1-P | Field mustard | cytosol | 15.0 | 14.45 |
| Bra005900.1-P | Field mustard | cytosol | 15.09 | 14.35 |
| Bra038685.1-P | Field mustard | cytosol | 14.91 | 14.34 |
| Bra028727.1-P | Field mustard | cytosol | 15.38 | 14.32 |
| Bra034802.1-P | Field mustard | cytosol | 14.25 | 13.54 |
| Bra001426.1-P | Field mustard | cytosol | 14.15 | 13.49 |
| Bra019603.1-P | Field mustard | cytosol | 6.89 | 7.12 |
| Bra017972.1-P | Field mustard | cytosol | 6.79 | 6.92 |
| Bra034251.1-P | Field mustard | nucleus | 9.72 | 6.25 |
| Bra007802.1-P | Field mustard | nucleus, plastid | 9.81 | 6.25 |
| Bra041162.1-P | Field mustard | cytosol, nucleus, plastid | 1.04 | 5.53 |
Protein Annotations
| EnsemblPlants:Bra015302.1 | EnsemblPlants:Bra015302.1-P | EnsemblPlantsGene:Bra015302 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil |
| PANTHER:PTHR45001 | PFAM:PF00917 | PFscan:PS50144 | SEG:seg | SMART:SM00061 | SUPFAM:SSF49599 |
| UniParc:UPI000254409A | UniProt:M4DFM9 | MapMan:22.5.1.6 | : | : | : |
Description
AT1G04300 (E=0.0) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT5G43560.2); Has 15585 Blast hits to 9972 proteins in 679 species: Archae - 16; Bacteria - 1260; Metazoa - 5683; Fungi - 2012; Plants - 671; Viruses - 109; Other Eukaryotes - 5834 (source: NCBI BLink).
Coordinates
chrA10:+:2579361..2584355
Molecular Weight (calculated)
117943.0 Da
IEP (calculated)
6.841
GRAVY (calculated)
-0.730
Length
1060 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAETVPEVSG VSSNGHHSVS GGEALSLWRS SGQVENGTPS TSPSYWDTDD DEEDYGLKPS QLFGKHTWKI AKFSEINKRE LRSSVFDAGG YKWYILIYPQ
0101: GCDVCNHLSL FLCVANHEKL LPGWSHFAQF TIAVVNKDSK KSKFSDTLHR FWKKEHDWGW KKFMELPKLH EGFIDDSDSL TIEAQVQVIR ERVDRPFRCL
0201: HCGYRRELVR VYFNNVEQHC RRFVEEKRSK LGRLIEDKAR WTSFGVFWLG MDQNCRRRMS REKMDVILKG VVKHFFIEKE VTSTLVMDSL YSGLKALQGQ
0301: AKNKKARPSL LDAKELPAPI VSVDKDMFVL VDDVLLLLER AALEPLPTHE DKSPQNRTKD ANDGEEVNNE VVERDERRLT ELGRRTVEIY VLTHIFSSKI
0401: EVAYQEAIAL KRQEELIREE EEAWLAETEQ RAKRGAAERE KKSKKKQAKQ KRNKNKGKDK RKEEKVTVAT HEKDLKENQH DEEEKDSVTE RAQSSAEKTD
0501: ILGDVSDDVS DSVDGSVDIL HPDLEDGDSS SVHWETDTLE TYPPPSGGSD ISISTPNGIG ERKNQSTVDD SSSTCSNDSI RSGVNNGSYK GNALNFRNQK
0601: SPNKGTNHQV KMIFDTRSLA SETDNQPSTL GTESKSQSSP SESDWVVVSR IQEPESSRNR SPVGKERNVA QIIVNSVDMD RLKVKSAAVL SSPRSAAKNP
0701: SPLTQTKPEK KSVDAVPNRK VISAPGPPSS SQVVRPSSEI QSQTVGPRAD VQKISAPKQS ATTTTISRPS SAPIIPAMQP APIIASSSVQ STSSSLPRSV
0801: SSAGRLGPDS SVHNQQTYIP QSYKHAIVGN SPGSTSSFIH HTSSHGVVPT TLPSSSYSQT PTLSHQSSFP FSQDAFMWAG RSSNSVNMGM NSPYTPAVTS
0901: NRSISHIDVE IARQQQPQSL MTDEFPHLDI INDLLEDESC SNMAFNGNIY NSQPQLFNSQ YAYRGGADLG MSGEFMSSGR SRSFGEEGFH YMPRVSASGA
1001: YGGDGLMPTQ WQMGNVDLSL LAMRNSNLED TTPTYHHHTY SSFSPGINGY TEYRPSSNGH
0101: GCDVCNHLSL FLCVANHEKL LPGWSHFAQF TIAVVNKDSK KSKFSDTLHR FWKKEHDWGW KKFMELPKLH EGFIDDSDSL TIEAQVQVIR ERVDRPFRCL
0201: HCGYRRELVR VYFNNVEQHC RRFVEEKRSK LGRLIEDKAR WTSFGVFWLG MDQNCRRRMS REKMDVILKG VVKHFFIEKE VTSTLVMDSL YSGLKALQGQ
0301: AKNKKARPSL LDAKELPAPI VSVDKDMFVL VDDVLLLLER AALEPLPTHE DKSPQNRTKD ANDGEEVNNE VVERDERRLT ELGRRTVEIY VLTHIFSSKI
0401: EVAYQEAIAL KRQEELIREE EEAWLAETEQ RAKRGAAERE KKSKKKQAKQ KRNKNKGKDK RKEEKVTVAT HEKDLKENQH DEEEKDSVTE RAQSSAEKTD
0501: ILGDVSDDVS DSVDGSVDIL HPDLEDGDSS SVHWETDTLE TYPPPSGGSD ISISTPNGIG ERKNQSTVDD SSSTCSNDSI RSGVNNGSYK GNALNFRNQK
0601: SPNKGTNHQV KMIFDTRSLA SETDNQPSTL GTESKSQSSP SESDWVVVSR IQEPESSRNR SPVGKERNVA QIIVNSVDMD RLKVKSAAVL SSPRSAAKNP
0701: SPLTQTKPEK KSVDAVPNRK VISAPGPPSS SQVVRPSSEI QSQTVGPRAD VQKISAPKQS ATTTTISRPS SAPIIPAMQP APIIASSSVQ STSSSLPRSV
0801: SSAGRLGPDS SVHNQQTYIP QSYKHAIVGN SPGSTSSFIH HTSSHGVVPT TLPSSSYSQT PTLSHQSSFP FSQDAFMWAG RSSNSVNMGM NSPYTPAVTS
0901: NRSISHIDVE IARQQQPQSL MTDEFPHLDI INDLLEDESC SNMAFNGNIY NSQPQLFNSQ YAYRGGADLG MSGEFMSSGR SRSFGEEGFH YMPRVSASGA
1001: YGGDGLMPTQ WQMGNVDLSL LAMRNSNLED TTPTYHHHTY SSFSPGINGY TEYRPSSNGH
0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.