Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0923700-04 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G43560.1 | Os01t0923700-04 | AT1G27320.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G016190.3 | Barley | nucleus | 70.87 | 19.5 |
| TraesCS5A01G060400.1 | Wheat | nucleus | 70.87 | 19.5 |
| TraesCS5D01G072000.1 | Wheat | nucleus | 70.87 | 19.5 |
| TraesCS5B01G071600.1 | Wheat | nucleus | 70.23 | 19.34 |
| EES16279 | Sorghum | nucleus | 66.99 | 18.45 |
| Zm00001d041395_P002 | Maize | nucleus | 63.75 | 17.73 |
| Zm00001d030960_P003 | Maize | nucleus | 63.11 | 17.35 |
| PGSC0003DMT400042093 | Potato | nucleus | 30.74 | 14.22 |
| Os12t0489200-01 | Rice | cytosol | 1.94 | 13.95 |
| Os07t0163800-01 | Rice | cytosol, plasma membrane | 10.03 | 10.54 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 36.57 | 10.5 |
| Os03t0192900-01 | Rice | cytosol, nucleus | 2.91 | 10.11 |
| VIT_05s0020g04980.t01 | Wine grape | nucleus | 34.3 | 9.25 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 40.13 | 8.78 |
| Solyc06g053750.2.1 | Tomato | nucleus | 31.07 | 8.44 |
| KRH31732 | Soybean | nucleus | 29.77 | 8.08 |
| Solyc09g089560.2.1 | Tomato | nucleus | 28.48 | 7.97 |
| KRG92287 | Soybean | nucleus | 29.13 | 7.89 |
| KRH34524 | Soybean | nucleus | 29.13 | 7.89 |
| Bra015302.1-P | Field mustard | nucleus | 26.86 | 7.83 |
| CDX89828 | Canola | nucleus | 26.86 | 7.82 |
| Solyc03g005430.2.1 | Tomato | nucleus | 28.48 | 7.66 |
| CDY18218 | Canola | nucleus | 25.57 | 7.47 |
| KRG90366 | Soybean | endoplasmic reticulum, plasma membrane | 29.45 | 7.41 |
| Bra032518.1-P | Field mustard | nucleus | 22.01 | 6.84 |
| AT5G43560.1 | Thale cress | nucleus | 23.3 | 6.82 |
| CDY10066 | Canola | nucleus | 22.33 | 6.8 |
| AT1G04300.3 | Thale cress | nucleus | 23.62 | 6.75 |
| CDY32539 | Canola | nucleus | 21.36 | 6.56 |
| Os01t0775300-01 | Rice | cytosol, mitochondrion, nucleus | 27.51 | 6.52 |
| CDX86642 | Canola | nucleus | 21.36 | 6.32 |
| CDY22344 | Canola | nucleus | 17.48 | 5.83 |
| Bra033684.1-P | Field mustard | nucleus | 17.48 | 5.83 |
| CDX94711 | Canola | nucleus | 18.12 | 5.82 |
| Os02t0613400-01 | Rice | extracellular | 5.5 | 5.76 |
| Os01t0771400-00 | Rice | plasma membrane | 3.24 | 0.98 |
| AT5G52330.3 | Thale cress | cytosol | 0.32 | 0.25 |
| Bra010174.1-P | Field mustard | cytosol | 0.0 | 0.0 |
| Bra023279.1-P | Field mustard | cytosol | 0.0 | 0.0 |
| Zm00001d030958_P001 | Maize | nucleus | 0.0 | 0.0 |
| Solyc06g053740.2.1 | Tomato | cytosol | 0.0 | 0.0 |
| AT4G16045.1 | Thale cress | cytosol | 0.0 | 0.0 |
| PGSC0003DMT400042094 | Potato | cytosol | 0.0 | 0.0 |
| Bra041162.1-P | Field mustard | cytosol, nucleus, plastid | 0.0 | 0.0 |
| CDX73257 | Canola | cytosol | 0.0 | 0.0 |
| Os12t0489100-01 | Rice | cytosol, extracellular, plasma membrane | 0.0 | 0.0 |
| Os11t0573000-01 | Rice | cytosol, plasma membrane | 0.0 | 0.0 |
| Os05t0508700-01 | Rice | nucleus | 0.0 | 0.0 |
| Os03t0192800-01 | Rice | nucleus | 0.0 | 0.0 |
| OQU79503 | Sorghum | nucleus | 0.0 | 0.0 |
| CDX93823 | Canola | cytosol | 0.0 | 0.0 |
| CDY01258 | Canola | cytosol | 0.0 | 0.0 |
| CDY01264 | Canola | cytosol | 0.0 | 0.0 |
| CDY26906 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Os12t0597200-01 | EnsemblPlantsGene:Os12g0597200 | PANTHER:PTHR45001 | ProteinID:BAT17930.1 | SEG:seg | UniParc:UPI000393C231 |
| UniProt:A0A0N7KUB2 | MapMan:35.2 | : | : | : | : |
Description
single domain MDC protein 12, single MATH domain containing protein 12Similar to MATH domain containing protein, expressed. (Os12t0597200-01)
Coordinates
chr12:+:25076498..25077559
Molecular Weight (calculated)
34657.5 Da
IEP (calculated)
5.152
GRAVY (calculated)
-0.890
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: SMSAVGRLGN EPSASAPSYI PRSYRNAMME RSSVGASSFT HQTSSEQRVA QSQSMFSLSP SILSPEHLIG NDRSSLRQGL TFGTVKPETL NQWREESSQQ
101: ASSSSSSSSN DHGAVSSSNG GEFEKFYLFG KPRSKQLSEI SARSTPFQPQ GLVSDEFPHL DIINDLLNDE QCERRTLKVL QRSQQAFARQ YSMPNNSSTP
201: DYGMFAQSDP YLFDQPEQYY DEEIPRFYNS LNGTSRGLRE RSYSHFDLPS YSNGQFDDMM MNQWPYGQTD LSLPNFGADM NGYPYQSSDY PNSANGLSRY
301: PPYRPANGH
101: ASSSSSSSSN DHGAVSSSNG GEFEKFYLFG KPRSKQLSEI SARSTPFQPQ GLVSDEFPHL DIINDLLNDE QCERRTLKVL QRSQQAFARQ YSMPNNSSTP
201: DYGMFAQSDP YLFDQPEQYY DEEIPRFYNS LNGTSRGLRE RSYSHFDLPS YSNGQFDDMM MNQWPYGQTD LSLPNFGADM NGYPYQSSDY PNSANGLSRY
301: PPYRPANGH
001: MFVIISPCFS VLQIMINFFQ VSIIVHLSAW SLFSLWIPSH VGSFAILEAG WSQFAQFTIS VLSQDLKKSK FSDTLHRFWK KEHDWGWKKF MELPKLKDGF
101: IDESGCLTIE AKVQVIRERV DRPFRCLDCG YRRELVRVYF QNVEQICRRF VEEKRSKLGR LIEDKARWTS FGVFWLGMDQ NSRRRMCREK VDVILKGVVK
201: HFFVEKEVSS TLVMDSLYSG LKALEGQTKN MKARSRLLDA KQLPAPIVSV DKDMFVLVDD VLLLLERAAL EPLPPKDEKG RQNRTKDGND GEEVNKEADE
301: RDERRLTELG RRTVEIFILS HIFSTKIEVA HQEAIALKRQ EELIREEEEA WLAETEQRAK RGAAEREKKS KKKQAKQKRN KNKGKDKRKE EKVSFATHAK
401: DLEENQNQNQ NDEEEKDSVT EKAQSSAEKP DTLGDVSDIS DSVDGSADIL QPDLEDRDSS SVLWDTDALE IHPPSSEGSS RGRGISISTP NGITEGKSHS
501: TMDDSSSTCS NDSIRSGVTN GSYQGNSLNF RNQKSPNKGK NQQVKAMTDA HSLASETDDQ PSTLGTDPKG QNYSSEASNV GESDWVVVSH IQEPEGSRNR
601: IPVGRERKTV QSIVNSVDMD RPKEKSTAVL SSPRNVAKNP SPLTQTKPEK KSISTADGIP NRKVLATGPP SSSQVVLPSD IQSQTVGLRA DMQKLSAPKQ
701: PPATTISRPS SAPIIPAMRP SPITVSSSVQ TTTSLPRSVS SAGRLGPDPS LHNQQTYTPQ SYKNAIVGNS LGSSSSSFNH HPSSHGVVPT TLPSSSYSQA
801: PTSSYQSSFP YSQDGLLWTG RSPSSVNMGM YNNTYSPAVT SNRSLNHMDV QIAQQQAQSM MTDEFPHLDI INDLLEDEQC SNMVYNGSIF NPQPQVFNGQ
901: YSSYHGELLS GGRTRSFGEE GLHYMARGPY GTDGMMPRQW QMTNMDLSLP AMRSNGMEDG TSSAANYHHS YFGLDASNPS FTSGINGYTE FRPSNGH
101: IDESGCLTIE AKVQVIRERV DRPFRCLDCG YRRELVRVYF QNVEQICRRF VEEKRSKLGR LIEDKARWTS FGVFWLGMDQ NSRRRMCREK VDVILKGVVK
201: HFFVEKEVSS TLVMDSLYSG LKALEGQTKN MKARSRLLDA KQLPAPIVSV DKDMFVLVDD VLLLLERAAL EPLPPKDEKG RQNRTKDGND GEEVNKEADE
301: RDERRLTELG RRTVEIFILS HIFSTKIEVA HQEAIALKRQ EELIREEEEA WLAETEQRAK RGAAEREKKS KKKQAKQKRN KNKGKDKRKE EKVSFATHAK
401: DLEENQNQNQ NDEEEKDSVT EKAQSSAEKP DTLGDVSDIS DSVDGSADIL QPDLEDRDSS SVLWDTDALE IHPPSSEGSS RGRGISISTP NGITEGKSHS
501: TMDDSSSTCS NDSIRSGVTN GSYQGNSLNF RNQKSPNKGK NQQVKAMTDA HSLASETDDQ PSTLGTDPKG QNYSSEASNV GESDWVVVSH IQEPEGSRNR
601: IPVGRERKTV QSIVNSVDMD RPKEKSTAVL SSPRNVAKNP SPLTQTKPEK KSISTADGIP NRKVLATGPP SSSQVVLPSD IQSQTVGLRA DMQKLSAPKQ
701: PPATTISRPS SAPIIPAMRP SPITVSSSVQ TTTSLPRSVS SAGRLGPDPS LHNQQTYTPQ SYKNAIVGNS LGSSSSSFNH HPSSHGVVPT TLPSSSYSQA
801: PTSSYQSSFP YSQDGLLWTG RSPSSVNMGM YNNTYSPAVT SNRSLNHMDV QIAQQQAQSM MTDEFPHLDI INDLLEDEQC SNMVYNGSIF NPQPQVFNGQ
901: YSSYHGELLS GGRTRSFGEE GLHYMARGPY GTDGMMPRQW QMTNMDLSLP AMRSNGMEDG TSSAANYHHS YFGLDASNPS FTSGINGYTE FRPSNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [endoplasmic reticulum,plasma membrane]
SUBAcon: [endoplasmic reticulum,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.