Factsheet for Os12t0489100-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 24083427
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0573000-01	Rice	cytosol, plasma membrane	51.36	97.59
EES15989	Sorghum	cytosol	94.37	46.35
TraesCS5A01G105900.1	Wheat	cytosol	93.65	46.11
HORVU5Hr1G031980.4	Barley	cytosol	92.92	45.71
TraesCS5B01G111000.7	Wheat	cytosol	93.47	45.7
TraesCS5D01G123300.4	Wheat	cytosol	93.28	45.61
EES09985	Sorghum	cytosol	92.2	45.44
Zm00001d041035_P002	Maize	cytosol	93.65	45.3
TraesCS4D01G165800.1	Wheat	unclear	91.11	44.86
TraesCS4A01G163000.1	Wheat	cytosol	90.93	44.85
HORVU4Hr1G034950.2	Barley	cytosol	87.48	43.11
VIT_06s0009g00960.t01	Wine grape	cytosol	86.75	42.83
GSMUA_Achr5P02720_001	Banana	cytosol	86.39	42.69
GSMUA_Achr4P28400_001	Banana	cytosol	85.66	42.33
VIT_13s0073g00610.t01	Wine grape	cytosol	85.48	42.24
GSMUA_Achr10P...	Banana	cytosol	84.75	41.88
GSMUA_Achr4P22710_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	86.03	41.18
Zm00001d023640_P004	Maize	cytosol	83.12	40.46
Solyc11g006320.1.1	Tomato	cytosol	80.94	39.93
Solyc05g055090.2.1	Tomato	cytosol	79.85	39.32
Os01t0771400-00	Rice	plasma membrane	71.87	38.82
Zm00001d052943_P023	Maize	plastid	84.03	34.58
Os03t0192800-01	Rice	nucleus	13.07	23.15
Os05t0508700-01	Rice	nucleus	19.42	13.88
Os01t0775300-01	Rice	cytosol, mitochondrion, nucleus	18.87	7.98
Os12t0597200-01	Rice	cytosol, nucleus, plastid	0.0	0.0
Os12t0489200-01	Rice	cytosol	0.0	0.0
Os07t0163800-01	Rice	cytosol, plasma membrane	0.0	0.0
Os03t0192900-01	Rice	cytosol, nucleus	0.0	0.0
Os02t0613400-01	Rice	extracellular	0.0	0.0

Protein Annotations

MapMan:14.6.2.3	MapMan:19.2.3.1.1.5	Gene3D:2.60.210.10	Gene3D:3.90.70.10	ProteinID:BAF29812.1	ProteinID:BAT17189.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0006508
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987
GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR002083	InterPro:IPR008974
InterPro:IPR028889	InterPro:MATH/TRAF_dom	EnsemblPlantsGene:Os12g0489100	EnsemblPlants:Os12t0489100-01	PFAM:PF00443	PFAM:PF00917
ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50144	PFscan:PS50235	PANTHER:PTHR24006	PANTHER:PTHR24006:SF577
InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	UniProt:Q0INA3	SMART:SM00061	SUPFAM:SSF49599	SUPFAM:SSF54001
InterPro:TRAF-like	UniParc:UPI0000DD9EBB	InterPro:USP_CS	InterPro:USP_dom	SEG:seg	:

Description

single domain MDC protein 13, single MATH domain containing protein 13Similar to Ubiquitin-specific protease 12. (Os12t0489100-01)

Coordinates

chr12:+:18334665..18342391

Molecular Weight (calculated)

64114.3 Da

IEP (calculated)

4.786

GRAVY (calculated)

-0.620

Length

551 amino acids

Sequence
(BLAST)

001: MTMMTPPPIE QQQQEDEEML VPHQELPAAA AVVADAVQPM EVVAQTEPAN AAESQPPEDP QTSRFTWTIE NFTRINGKKH YSEPFVVGGF KWRVLIFPKG
101: NNVDHFSMYL DVADSVNLPY GWNRYAQFSL AVVNQIHPKY TIRKDTQHQF NARESDWGFT SFMPLSDLYD PSRGYLVNDT VVVEAEVAVR RMVDYWTYDS
201: KKETGYVGLK NQGATCYMNS LLQTLYHIPY FRKAVYHMPT TENDMPSGSI PLALQSLFYK LQYSDNSVAT KELTKSFGWD TYDSFMQHDV QELNRVLCEK
301: LEDKMKETVV EGTIEQLFEG HHINYIECIN VDYKSNRKES FYDLQLDVKG CSDVYASFDK YVEVERLEGD NKYHAEQYGL QDAKKGVLFL DFPPVLQLQL
401: KRFEYDYMRD TMVKINDRYE FPLQLDLDRD DGKYLAPDAD RSIRNLYTLH SVLVHSGGVH GGHYYAFIRP TLSDQWYKFD DERVTKEDTK KALEEQYGGE
501: EELPQINPGF NNTPFKFTKY SNAYMLVYIR ESDKDKIMCN VDEKDIAEHL R

Best Arabidopsis Sequence Match ( AT5G06600.1 )
(BLAST)

0001: MTMMTPPPVD QPEDEEMLVP NSDLVDGPAQ PMEVTQPETA ASTVENQPAE DPPTLKFTWT IPNFSRQNTR KHYSDVFVVG GYKWRILIFP KGNNVDHLSM
0101: YLDVSDAASL PYGWSRYAQF SLAVVNQIHT RYTVRKETQH QFNARESDWG FTSFMPLSEL YDPSRGYLVN DTVLVEAEVA VRKVLDYWSY DSKKETGFVG
0201: LKNQGATCYM NSLLQTLYHI PYFRKAVYHM PTTENDAPTA SIPLALQSLF YKLQYNDTSV ATKELTKSFG WDTYDSFMQH DVQELNRVLC EKLEDKMKGT
0301: VVEGTIQQLF EGHHMNYIEC INVDFKSTRK ESFYDLQLDV KGCKDVYASF DKYVEVERLE GDNKYHAEGH GLQDAKKGVL FIDFPPVLQL QLKRFEYDFM
0401: RDTMVKINDR YEFPLELDLD REDGKYLSPD ADRSVRNLYT LHSVLVHSGG VHGGHYYAFI RPTLSDQWYK FDDERVTKED LKRALEEQYG GEEELPQTNP
0501: GFNNNPPFKF TKYSNAYMLV YIRESDKDKI ICNVDEKDIA EHLRVRLKKE QEEKEDKRRY KAQAHLYTII KVARDEDLKE QIGKDIYFDL VDHDKVRSFR
0601: IQKQTPFQQF KEEVAKEFGV PVQLQRFWIW AKRQNHTYRP NRPLTPQEEL QPVGQIREAS NKANTAELKL FLEVEHLDLR PIPPPEKSKE DILLFFKLYD
0701: PEKAVLSYAG RLMVKSSSKP MDITGKLNEM VGFAPDEEIE LFEEIKFEPC VMCEHLDKKT SFRLCQIEDG DIICFQKPLV NKEIECLYPA VPSFLEYVQN
0801: RQLVRFRALE KPKEDEFVLE LSKQHTYDDV VEKVAEKLGL DDPSKLRLTS HNCYSQQPKP QPIKYRGVDH LSDMLVHYNQ TSDILYYEVL DIPLPELQGL
0901: KTLKVAFHHA TKEEVVIHNI RLPKQSTVGD VINELKTKVE LSHPDAELRL LEVFYHKIYK IFPSTERIEN INDQYWTLRA EEIPEEEKNI GPNDRLILVY
1001: HFAKETGQNQ QVQNFGEPFF LVIHEGETLE EIKNRIQKKL HVSDEDFAKW KFAFMSMGRP EYLQDTDVVY NRFQRRDVYG AFEQYLGLEH ADTTPKRAYA
1101: ANQNRHAYEK PVKIYN

Arabidopsis Description

UBP12Ubiquitin carboxyl-terminal hydrolase 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPT1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.