Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES15989 | Sorghum | cytosol | 92.89 | 94.3 |
| Os12t0489100-01 | Rice | cytosol, extracellular, plasma membrane | 45.3 | 93.65 |
| HORVU5Hr1G031980.4 | Barley | cytosol | 87.09 | 88.57 |
| TraesCS5A01G105900.1 | Wheat | cytosol | 87.01 | 88.56 |
| TraesCS5B01G111000.7 | Wheat | cytosol | 87.36 | 88.29 |
| TraesCS5D01G123300.4 | Wheat | cytosol | 87.09 | 88.02 |
| Zm00001d023640_P004 | Maize | cytosol | 86.22 | 86.75 |
| TraesCS4D01G165800.1 | Wheat | unclear | 84.81 | 86.33 |
| TraesCS4A01G163000.1 | Wheat | cytosol | 84.46 | 86.12 |
| GSMUA_Achr5P02720_001 | Banana | cytosol | 82.09 | 83.86 |
| GSMUA_Achr4P28400_001 | Banana | cytosol | 81.3 | 83.05 |
| VIT_13s0073g00610.t01 | Wine grape | cytosol | 80.77 | 82.51 |
| GSMUA_Achr10P... | Banana | cytosol | 80.42 | 82.15 |
| HORVU4Hr1G034950.2 | Barley | cytosol | 80.33 | 81.84 |
| VIT_06s0009g00960.t01 | Wine grape | cytosol | 79.63 | 81.27 |
| GSMUA_Achr4P22710_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 81.74 | 80.89 |
| Solyc11g006320.1.1 | Tomato | cytosol | 76.47 | 77.98 |
| Solyc05g055090.2.1 | Tomato | cytosol | 74.71 | 76.05 |
| Zm00001d007904_P003 | Maize | cytosol | 74.98 | 73.56 |
| Zm00001d018859_P010 | Maize | cytosol | 72.08 | 73.11 |
| Zm00001d043312_P001 | Maize | nucleus | 63.39 | 64.64 |
| Zm00001d052943_P023 | Maize | plastid | 72.17 | 61.39 |
| Zm00001d030958_P001 | Maize | nucleus | 8.87 | 22.15 |
| Os12t0489200-01 | Rice | cytosol | 0.61 | 16.28 |
| Zm00001d028177_P004 | Maize | cytosol | 14.93 | 15.84 |
| Zm00001d020157_P011 | Maize | cytosol, mitochondrion, nucleus | 14.93 | 15.61 |
| Zm00001d030960_P003 | Maize | nucleus | 13.96 | 14.15 |
| Zm00001d041395_P002 | Maize | nucleus | 13.43 | 13.77 |
| Zm00001d043294_P006 | Maize | nucleus | 14.14 | 12.58 |
| Zm00001d038655_P003 | Maize | nucleus | 13.61 | 11.92 |
| Zm00001d010716_P002 | Maize | nucleus | 12.12 | 10.49 |
| Zm00001d051075_P002 | Maize | nucleus | 15.1 | 10.16 |
| Zm00001d034390_P001 | Maize | nucleus | 2.28 | 10.08 |
Protein Annotations
| MapMan:14.6.2.3 | MapMan:19.2.3.1.1.5 | Gene3D:2.60.210.10 | Gene3D:3.10.20.90 | Gene3D:3.90.70.10 | UniProt:A0A1D6MTS2 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 |
| GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016579 |
| GO:GO:0016787 | GO:GO:0019538 | GO:GO:0036459 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:IPR028889 |
| InterPro:MATH/TRAF_dom | ProteinID:ONM32286.1 | PFAM:PF00443 | PFAM:PF00917 | PFAM:PF12436 | PFAM:PF14533 |
| ScanProsite:PS00972 | ScanProsite:PS00973 | PFscan:PS50144 | PFscan:PS50235 | PANTHER:PTHR24006 | PANTHER:PTHR24006:SF577 |
| InterPro:Papain_like_cys_pep_sf | InterPro:Peptidase_C19_UCH | SMART:SM00061 | SUPFAM:SSF49599 | SUPFAM:SSF54001 | InterPro:TRAF-like |
| UniParc:UPI000842FD85 | InterPro:USP7_ICP0-binding_dom | InterPro:USP_C | InterPro:USP_CS | InterPro:USP_dom | EnsemblPlantsGene:Zm00001d041035 |
| EnsemblPlants:Zm00001d041035_P002 | EnsemblPlants:Zm00001d041035_T002 | SEG:seg | : | : | : |
Description
Ubiquitin carboxyl-terminal hydrolase 13
Coordinates
chr3:+:92247530..92260923
Molecular Weight (calculated)
133251.0 Da
IEP (calculated)
5.597
GRAVY (calculated)
-0.536
Length
1139 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTMMTPPPLE QQQEDDEMLV PHQELPVAGP EAAPQPMEGE DLSLLSPSVL VFVGLCVSVF SLISSHTWWL LSWFLLLVVA QTEPATTAES QPPEDPQTTR
0101: FTWTIESFSR LNTKKHYSDV FVVGGYKWRV LIFPKGNNVD HFSMYLDVAD SGNLPYGWSR YAQFSLAVVN QIHPKYTIRK DTQHQFNARE SDWGFTSFMP
0201: LSDLYDPSRG YLVNDTIIVE AEVAVRRMVD YWTYDSKKET GFVGLKNQGA TCYMNSLLQT LYHTPYFRKA VYHMPTTEND MPSGSIPLAL QSLFYKLQYS
0301: DNSVATKELT KSFGWDTYDS FMQHDVQELN RVLCEKLEDK MKGTVVEGTI EQLFEGHHIN YIECINVDYK SNRKESFYDL QLDVKGCRDV YASFDKYVEV
0401: ESLEGDNKYH AERYGLQDAR KGVLFLDFPP VLQLQLKRFE YDYMRDTMVK INDRYEFPLQ LDLDRDNGKY LSPDADRSIR NLYTLHSVLV HSGGVHGGHY
0501: YAFIRPTLSD QWYKFDDERV TKEDTKKALE EQYGGEEELP QINPGFNNTP FKFTKYSNAY MLVYIRENDK DKIMCNVDEK DIAEHLRIRL KKEQEEKEHK
0601: KKEKSEAHLY TIIKIARDKD LKEQIGKNIY FDLVDHEKVC SFRIQKQLPF TAFQEEVAKE FGIPVQFQRF WLWAKRQNHT YRPNRPLTPH EEAQSVGQLR
0701: EVSNKAHNAE LKLFLEVELG PELCPIRPPE KSKEDILLFF KLYNAEKEEL CFVGRLFVKA LGKPSEILTK LNEMAGFSPN EEIELYEEIK FEPNVMCEHI
0801: DKKLTFRSSQ LEDGDIICFQ KAPVPDGDPQ VRYPDVPSFL EYVHNRQVVH FRSLDKPKDD DFSLELSKLH TYDDVVERVA HKLGLDDPSK IRLTSHNCYS
0901: QQPKPQPIRY RGVEHLLDML VHYNQTSDIL YYEVLDIPLP ELQCLKTLKV AFHHATKDEV VVHSIRLPRN STISDVITDL KTKVELSNPD TELRLLEVFY
1001: HKIYKIFPPH EKIENINDQY WTLRAEEIPE EEKNLGPHDR LIHVYHFMKD PNQNQQIQNF GDPFLMVIRE VETAAEVLER IQRKLRVPDE DFSKWKLAFI
1101: SMNRPEYLQD TDVVSARFQA CDFLIILKCI PSLIHYIHT
0101: FTWTIESFSR LNTKKHYSDV FVVGGYKWRV LIFPKGNNVD HFSMYLDVAD SGNLPYGWSR YAQFSLAVVN QIHPKYTIRK DTQHQFNARE SDWGFTSFMP
0201: LSDLYDPSRG YLVNDTIIVE AEVAVRRMVD YWTYDSKKET GFVGLKNQGA TCYMNSLLQT LYHTPYFRKA VYHMPTTEND MPSGSIPLAL QSLFYKLQYS
0301: DNSVATKELT KSFGWDTYDS FMQHDVQELN RVLCEKLEDK MKGTVVEGTI EQLFEGHHIN YIECINVDYK SNRKESFYDL QLDVKGCRDV YASFDKYVEV
0401: ESLEGDNKYH AERYGLQDAR KGVLFLDFPP VLQLQLKRFE YDYMRDTMVK INDRYEFPLQ LDLDRDNGKY LSPDADRSIR NLYTLHSVLV HSGGVHGGHY
0501: YAFIRPTLSD QWYKFDDERV TKEDTKKALE EQYGGEEELP QINPGFNNTP FKFTKYSNAY MLVYIRENDK DKIMCNVDEK DIAEHLRIRL KKEQEEKEHK
0601: KKEKSEAHLY TIIKIARDKD LKEQIGKNIY FDLVDHEKVC SFRIQKQLPF TAFQEEVAKE FGIPVQFQRF WLWAKRQNHT YRPNRPLTPH EEAQSVGQLR
0701: EVSNKAHNAE LKLFLEVELG PELCPIRPPE KSKEDILLFF KLYNAEKEEL CFVGRLFVKA LGKPSEILTK LNEMAGFSPN EEIELYEEIK FEPNVMCEHI
0801: DKKLTFRSSQ LEDGDIICFQ KAPVPDGDPQ VRYPDVPSFL EYVHNRQVVH FRSLDKPKDD DFSLELSKLH TYDDVVERVA HKLGLDDPSK IRLTSHNCYS
0901: QQPKPQPIRY RGVEHLLDML VHYNQTSDIL YYEVLDIPLP ELQCLKTLKV AFHHATKDEV VVHSIRLPRN STISDVITDL KTKVELSNPD TELRLLEVFY
1001: HKIYKIFPPH EKIENINDQY WTLRAEEIPE EEKNLGPHDR LIHVYHFMKD PNQNQQIQNF GDPFLMVIRE VETAAEVLER IQRKLRVPDE DFSKWKLAFI
1101: SMNRPEYLQD TDVVSARFQA CDFLIILKCI PSLIHYIHT
0001: MTMMTPPPLD QQEDEEMLVP NPDLVEGPQP MEVAQTDPAA TAVENPPPED PPSLKFTWTI PMFTRLNTRK HYSDVFVVGG YKWRILIFPK GNNVDHLSMY
0101: LDVADAANLP YGWSRYSQFS LAVVNQVNNR YSIRKETQHQ FNARESDWGF TSFMPLSELY EPTRGYLVND TVLIEAEVAV RKVLDYWSYD SKKETGFVGL
0201: KNQGATCYMN SLLQTLYHIP YFRKAVYHMP TTENDAPTAS IPLALQSLFY KLQYNDTSVA TKELTKSFGW DTYDSFMQHD VQELNRVLCE KLEDKMKGTV
0301: VEGTIQKLFE GHHMNYIECI NVDYKSTRKE SFYDLQLDVK GCKDVYASFD KYVEVERLEG DNKYHAEGHD LQDAKKGVLF IDFPPVLQLQ LKRFEYDFMR
0401: DTMVKINDRY EFPLQLDLDR EDGRYLSPDA DKSVRNLYTL HSVLVHSGGV HGGHYYAFIR PTLSDQWYKF DDERVTKEDV KRALEEQYGG EEELPQNNPG
0501: FNNPPFKFTK YSNAYMLVYI RESDKDKIIC NVDEKDIAEH LRVRLKKEQE EKEDKRKYKA QAHLFTTIKV ARDDDITEQI GKNIYFDLVD HEKVRSFRIQ
0601: KQTPFQQFKE EVAKEFGVPV QLQRFWIWAK RQNHTYRPNR PLSPNEELQT VGQIREASNK ANNAELKLFL EIERGPDDLP IPPPEKTSED ILLFFKLYDP
0701: ENAVLRYVGR LMVKSSSKPM DIVGQLNKMA GFAPDEEIEL FEEIKFEPCV MCEQIDKKTS FRLCQIEDGD IICYQKPLSI EESEFRYPDV PSFLEYVQNR
0801: ELVRFRTLEK PKEDEFTMEL SKLHTYDDVV ERVAEKLGLD DPSKLRLTSH NCYSQQPKPQ PIKYRGVDHL SDMLVHYNQT SDILYYEVLD IPLPELQGLK
0901: TLKVAFHSAT KDEVIIHNIR LPKQSTVGDV INELKTKVEL SHQDAELRLL EVFFHKIYKI FPSTERIENI NDQYWTLRAE EIPEEEKNIG PNDRLIHVYH
1001: FTKEAGQNQQ VQNFGEPFFL VIHEGETLEE IKTRIQKKLH VPDEDFAKWK FASFSMGRPD YLLDTDVVYN RFQRRDVYGA WEQYLGLEHI DNAPKRAYAA
1101: NQNRHAYEKP VKIYN
0101: LDVADAANLP YGWSRYSQFS LAVVNQVNNR YSIRKETQHQ FNARESDWGF TSFMPLSELY EPTRGYLVND TVLIEAEVAV RKVLDYWSYD SKKETGFVGL
0201: KNQGATCYMN SLLQTLYHIP YFRKAVYHMP TTENDAPTAS IPLALQSLFY KLQYNDTSVA TKELTKSFGW DTYDSFMQHD VQELNRVLCE KLEDKMKGTV
0301: VEGTIQKLFE GHHMNYIECI NVDYKSTRKE SFYDLQLDVK GCKDVYASFD KYVEVERLEG DNKYHAEGHD LQDAKKGVLF IDFPPVLQLQ LKRFEYDFMR
0401: DTMVKINDRY EFPLQLDLDR EDGRYLSPDA DKSVRNLYTL HSVLVHSGGV HGGHYYAFIR PTLSDQWYKF DDERVTKEDV KRALEEQYGG EEELPQNNPG
0501: FNNPPFKFTK YSNAYMLVYI RESDKDKIIC NVDEKDIAEH LRVRLKKEQE EKEDKRKYKA QAHLFTTIKV ARDDDITEQI GKNIYFDLVD HEKVRSFRIQ
0601: KQTPFQQFKE EVAKEFGVPV QLQRFWIWAK RQNHTYRPNR PLSPNEELQT VGQIREASNK ANNAELKLFL EIERGPDDLP IPPPEKTSED ILLFFKLYDP
0701: ENAVLRYVGR LMVKSSSKPM DIVGQLNKMA GFAPDEEIEL FEEIKFEPCV MCEQIDKKTS FRLCQIEDGD IICYQKPLSI EESEFRYPDV PSFLEYVQNR
0801: ELVRFRTLEK PKEDEFTMEL SKLHTYDDVV ERVAEKLGLD DPSKLRLTSH NCYSQQPKPQ PIKYRGVDHL SDMLVHYNQT SDILYYEVLD IPLPELQGLK
0901: TLKVAFHSAT KDEVIIHNIR LPKQSTVGDV INELKTKVEL SHQDAELRLL EVFFHKIYKI FPSTERIENI NDQYWTLRAE EIPEEEKNIG PNDRLIHVYH
1001: FTKEAGQNQQ VQNFGEPFFL VIHEGETLEE IKTRIQKKLH VPDEDFAKWK FASFSMGRPD YLLDTDVVYN RFQRRDVYGA WEQYLGLEHI DNAPKRAYAA
1101: NQNRHAYEKP VKIYN
Arabidopsis Description
UBP13UBP13 [Source:UniProtKB/TrEMBL;Acc:A0A178VEE0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.