Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES01550 | Sorghum | nucleus | 82.42 | 87.19 |
| Os01t0775300-01 | Rice | cytosol, mitochondrion, nucleus | 60.78 | 59.71 |
| TraesCS3D01G310000.1 | Wheat | nucleus | 58.44 | 58.16 |
| TraesCS3B01G343300.2 | Wheat | nucleus | 58.98 | 57.24 |
| TraesCS3A01G321300.2 | Wheat | nucleus | 58.2 | 56.65 |
| Zm00001d030958_P001 | Maize | nucleus | 20.16 | 56.58 |
| HORVU3Hr1G075800.5 | Barley | cytosol, nucleus, plastid | 59.22 | 55.41 |
| Zm00001d038655_P003 | Maize | nucleus | 48.67 | 47.92 |
| Zm00001d010716_P002 | Maize | nucleus | 46.8 | 45.52 |
| Zm00001d034390_P001 | Maize | nucleus | 9.06 | 44.96 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 34.38 | 40.89 |
| Zm00001d030960_P003 | Maize | nucleus | 34.22 | 38.97 |
| Zm00001d041395_P002 | Maize | nucleus | 32.73 | 37.71 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 35.08 | 31.8 |
| Zm00001d023640_P004 | Maize | cytosol | 12.97 | 14.66 |
| Zm00001d041035_P002 | Maize | cytosol | 12.58 | 14.14 |
| Zm00001d043312_P001 | Maize | nucleus | 12.11 | 13.88 |
| Zm00001d018859_P010 | Maize | cytosol | 12.03 | 13.71 |
| Zm00001d007904_P003 | Maize | cytosol | 11.88 | 13.09 |
| Zm00001d052943_P023 | Maize | plastid | 11.64 | 11.13 |
| Zm00001d020157_P011 | Maize | cytosol, mitochondrion, nucleus | 5.94 | 6.98 |
| Zm00001d028177_P004 | Maize | cytosol | 5.78 | 6.9 |
| Zm00001d051075_P002 | Maize | nucleus | 8.91 | 6.73 |
Protein Annotations
| EnsemblPlants:Zm00001d043294_P006 | EnsemblPlants:Zm00001d043294_T006 | EnsemblPlantsGene:Zm00001d043294 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil |
| PFAM:PF00917 | PFscan:PS50144 | ProteinID:ONM37454.1 | ProteinID:ONM37456.1 | SEG:seg | SMART:SM00061 |
| SUPFAM:SSF49599 | UniParc:UPI0008446F24 | UniProt:A0A1D6NA80 | MapMan:22.5.1.6 | : | : |
Description
TRAF-like superfamily protein
Coordinates
chr3:+:194882356..194899827
Molecular Weight (calculated)
142843.0 Da
IEP (calculated)
6.981
GRAVY (calculated)
-0.561
Length
1280 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAGTIIMDDS AASTSGLGDH NVSADSLSEW RSCEHVDNGI PSTSPPFWDT DSEDDDPGPR PSDLFGRYTW KIENFSKEKK REMKSEPFEA GGYKWYILVY
0101: PQGCDVSNHL SLFLCVANHE ELLPGWGHFA QFTIAVGNLD PKKVKYSDTL HKFWKKEHDW GWKKFMELSK IQDGFLVDDV LEIIAQVQVI REMLSSHQLI
0201: TIHKTNCNHH LLFFGYWREK ADRPFRCLDR PYRRELLRVY MTNIEQIYRR FVEERRRKLI RLIEDKMRWS SFRAFWLAID PTTKHRMSRE KSDIILKMVV
0301: KNFFVEKDVT STLVMDALYT GLKALEACSN GKKGMVTSID LEELSASMVH VDMDMFVLAG DFITLIERAA LEPLSCQSLS PKGDKCSQTR AKDGGTGEIN
0401: KVPIEHQERR LTELGQKILE IFVLSHIFSI LTCPSYHFMH CFVTFCFHVS GIEVAYKEAV ALKRQEELIR EEELLEQEMK GKRGSVAEKD KRSKKKQAKQ
0501: KKNNRKVKDK EREERSDSKF LERGKDVSTN HDREDSKQVG QSAVEADNFG QRALDVSDNL SGSTGVCQTD TCDKITEPVT VNAMNDVGIE MNNSQTWKDD
0601: STVDIETLVT SVSAAVNSIR GKINNLLDST SHITPNRGRS RRSRGISSII ISRYEDDLPS SSCSDCNTSV CGPVPRRDQE TALLTLKDRL RELGQRLHEK
0701: EIEGRELLKA HLEKKAAAEA AVDSSLASSS NSLEKTPQVL KGPDQSSVIV GDAKINAPLP KAVPVAISDD NNGVIPATAT YTINTKPVLV SPTPSKLEPV
0801: LCEEHVSSSI QQTNKAILMP SRSPLVDNEA NPTPPKSPVP QADTVAKATP APPKSPMLQI DTIAKATAAP TKSSTSQLDK VANIQAAPKS PAPQPDEVAS
0901: HHNSVSGQIL STSISKPRED TVSKRAAVVT VPGTPTPMSR PTSAPLLQVP KSTMLPTPSV QVSPMLSRSW TMSAQVPPML SRSRTVSERP NNEPSPTAPM
1001: YVTQTYRNAI LGKGHLDTTP ASLEQSTSVS PNTAASQPWS AYAMATSVMA PPFERNGQLP GKQGFMFGPS RAETLDNWHS WKGNTDVNRN TWKHDFPNQQ
1101: MTNCDAHLHH LKDISYQQLS SIGTEQHRLG GLQCREFLQR EIPAATFVSR QQYGSVGEEF PHIDIINDLL DEDQNSAHMT VSPLHEYHTF GLPFSSGGNV
1201: ADSEIPSVSS SVRFDMTDPY YGEGYRRAYN TQNALHRLDG YPNERLDSTA PPKRWAYSHP NPAVNLAYNS NVFPQQMGDY
0101: PQGCDVSNHL SLFLCVANHE ELLPGWGHFA QFTIAVGNLD PKKVKYSDTL HKFWKKEHDW GWKKFMELSK IQDGFLVDDV LEIIAQVQVI REMLSSHQLI
0201: TIHKTNCNHH LLFFGYWREK ADRPFRCLDR PYRRELLRVY MTNIEQIYRR FVEERRRKLI RLIEDKMRWS SFRAFWLAID PTTKHRMSRE KSDIILKMVV
0301: KNFFVEKDVT STLVMDALYT GLKALEACSN GKKGMVTSID LEELSASMVH VDMDMFVLAG DFITLIERAA LEPLSCQSLS PKGDKCSQTR AKDGGTGEIN
0401: KVPIEHQERR LTELGQKILE IFVLSHIFSI LTCPSYHFMH CFVTFCFHVS GIEVAYKEAV ALKRQEELIR EEELLEQEMK GKRGSVAEKD KRSKKKQAKQ
0501: KKNNRKVKDK EREERSDSKF LERGKDVSTN HDREDSKQVG QSAVEADNFG QRALDVSDNL SGSTGVCQTD TCDKITEPVT VNAMNDVGIE MNNSQTWKDD
0601: STVDIETLVT SVSAAVNSIR GKINNLLDST SHITPNRGRS RRSRGISSII ISRYEDDLPS SSCSDCNTSV CGPVPRRDQE TALLTLKDRL RELGQRLHEK
0701: EIEGRELLKA HLEKKAAAEA AVDSSLASSS NSLEKTPQVL KGPDQSSVIV GDAKINAPLP KAVPVAISDD NNGVIPATAT YTINTKPVLV SPTPSKLEPV
0801: LCEEHVSSSI QQTNKAILMP SRSPLVDNEA NPTPPKSPVP QADTVAKATP APPKSPMLQI DTIAKATAAP TKSSTSQLDK VANIQAAPKS PAPQPDEVAS
0901: HHNSVSGQIL STSISKPRED TVSKRAAVVT VPGTPTPMSR PTSAPLLQVP KSTMLPTPSV QVSPMLSRSW TMSAQVPPML SRSRTVSERP NNEPSPTAPM
1001: YVTQTYRNAI LGKGHLDTTP ASLEQSTSVS PNTAASQPWS AYAMATSVMA PPFERNGQLP GKQGFMFGPS RAETLDNWHS WKGNTDVNRN TWKHDFPNQQ
1101: MTNCDAHLHH LKDISYQQLS SIGTEQHRLG GLQCREFLQR EIPAATFVSR QQYGSVGEEF PHIDIINDLL DEDQNSAHMT VSPLHEYHTF GLPFSSGGNV
1201: ADSEIPSVSS SVRFDMTDPY YGEGYRRAYN TQNALHRLDG YPNERLDSTA PPKRWAYSHP NPAVNLAYNS NVFPQQMGDY
0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.