Factsheet for Zm00001d007904_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG34448	Sorghum	nucleus	93.63	97.23
TraesCS2D01G249100.1	Wheat	nucleus	89.06	92.4
TraesCS2A01G246800.3	Wheat	golgi	88.97	92.31
Zm00001d018859_P010	Maize	cytosol	89.23	92.25
TraesCS2B01G263500.4	Wheat	nucleus	88.89	92.23
HORVU2Hr1G058700.4	Barley	cytosol	87.42	90.95
Zm00001d041035_P002	Maize	cytosol	73.56	74.98
Zm00001d023640_P004	Maize	cytosol	71.83	73.67
Zm00001d043312_P001	Maize	nucleus	63.31	65.8
Zm00001d052943_P023	Maize	plastid	65.89	57.13
Zm00001d030958_P001	Maize	nucleus	8.27	21.05
Zm00001d028177_P004	Maize	cytosol	14.21	15.38
Zm00001d020157_P011	Maize	cytosol, mitochondrion, nucleus	14.38	15.34
Zm00001d030960_P003	Maize	nucleus	13.35	13.79
Zm00001d041395_P002	Maize	nucleus	13.09	13.68
Zm00001d043294_P006	Maize	nucleus	13.09	11.88
Zm00001d038655_P003	Maize	nucleus	12.49	11.15
Zm00001d034390_P001	Maize	nucleus	2.24	10.08
Zm00001d051075_P002	Maize	nucleus	14.04	9.63
Zm00001d010716_P002	Maize	nucleus	10.68	9.42

Protein Annotations

EntrezGene:100383827	MapMan:14.6.2.3	MapMan:19.2.3.1.1.5	Gene3D:2.60.210.10	Gene3D:3.10.20.90	Gene3D:3.90.70.10
UniProt:A0A1D6F9P9	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR002083	InterPro:IPR008974
InterPro:IPR028889	InterPro:MATH/TRAF_dom	ProteinID:ONM27865.1	PFAM:PF00443	PFAM:PF00917	PFAM:PF12436
PFAM:PF14533	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50144	PFscan:PS50235	PANTHER:PTHR24006
PANTHER:PTHR24006:SF565	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SMART:SM00061	SUPFAM:SSF49599	SUPFAM:SSF54001
InterPro:TRAF-like	UniParc:UPI0008435792	InterPro:USP7_ICP0-binding_dom	InterPro:USP_C	InterPro:USP_CS	InterPro:USP_dom
EnsemblPlantsGene:Zm00001d007904	EnsemblPlants:Zm00001d007904_P003	EnsemblPlants:Zm00001d007904_T003	SEG:seg	:	:

Description

Ubiquitin carboxyl-terminal hydrolase 13

Coordinates

chr2:+:242152006..242173997

Molecular Weight (calculated)

135971.0 Da

IEP (calculated)

6.171

GRAVY (calculated)

-0.595

Length

1161 amino acids

Sequence
(BLAST)

0001: MTTSPPPAEQ EQQEEEEVLV PHGPHQELPN GAQPMEVVPA EPAATVENQQ IEDPPISRFT WTIENLSRVS TKKLYSEIFV VGGYKWRILI FPRGNNVEFL
0101: SMYLDVADSG VLPYGWTRYA QFSLSVVNQI HNKFTIRKET QHQFSARESD WGFTSFMPLG ELYNPSRGYL VNDTCIVEAE VAVCKVVEYW SYDSKKETGY
0201: VGLKNQGATC YMNSLLQTLY HIPYFRKAVY HMPTTENDMP SGSIPLALQS LFYKLQYNDS SVSTKELTKS FGWDMHDSFM QHDVQELNRV LSEKLEDKMK
0301: GTVVEGTIQQ LFEGHHMNYI EYLQLDVKGC QDVYASFDKY VEVERLEGDN KYHADKHGLQ DAKKGVLFID FPPVLQLQLK RFEYDFMRDT MVKINDRYEF
0401: PLQLDLDRDN GKYLSPDADR NVRNLYTLHS VLVHSGGVHG GHYYAFIRPT LSDQWFKFDD ERVTKEDAKR ALEEQYGGEE ELPQTNPGLN NTPFKFTKYS
0501: NAYMLVYIRE SDKDKIICNV DEKDIAEHLR IRLENDREEK ERRKKEKAEA HLYTIIKVAR DDDLKAQIGK DIYFDLVDHD KVPSFRIQKQ MTFAQFKEEV
0601: AKEFGIPTQF QRFWLWAKRQ NHTYRPNRPL CPQDEAHTVG QLKELVNKAH NAELKLFLEV ELGLDLKPLP LPDKTREDIF LFFKLYEPEK EQLRYVGRLF
0701: VKASGRPQDI LLKLRMLAGF SQDDDIELYE EIKFEPNVMC EYIDNRLLFR SCQLEDGDII CFQKPSKPDS ADRYRFPDVP SFLTYIRNRQ VVHFRSLEKP
0801: KDDEFCLEMS KIFTYDQVVE KVAEKLGVDD PSKIRLTSHN CYSQQPKPQP IKYRGVERLL DMLIHYNQTS DILYYEVLDI PLPELQALKT LKVTYHHATK
0901: DEVSVHSIRL PKNSTVGDVL NDIKTKVELS HTNAELRLLE VFYHKIYKVF APNEKIENIN DQYWTLRAEE VPEEEKNLGP FDRLIHVYHF TKDTQNQTQV
1001: QNFGEPFFMV IREDETLSSI KERIQKKLKV PDEDFSKVIL YIMLTIKRSG RTKETSTEKS STFSAWCRLS KLMRLVLVNI CLVTFSSNQT LLFGQWKFAY
1101: ISLGRPDYFE DSDTVALKFQ RNMYGAWEQY LGLEHPDTAP RKAHTANQNR HSFERPVKIY N

Best Arabidopsis Sequence Match ( AT3G11910.1 )
(BLAST)

0001: MTMMTPPPLD QQEDEEMLVP NPDLVEGPQP MEVAQTDPAA TAVENPPPED PPSLKFTWTI PMFTRLNTRK HYSDVFVVGG YKWRILIFPK GNNVDHLSMY
0101: LDVADAANLP YGWSRYSQFS LAVVNQVNNR YSIRKETQHQ FNARESDWGF TSFMPLSELY EPTRGYLVND TVLIEAEVAV RKVLDYWSYD SKKETGFVGL
0201: KNQGATCYMN SLLQTLYHIP YFRKAVYHMP TTENDAPTAS IPLALQSLFY KLQYNDTSVA TKELTKSFGW DTYDSFMQHD VQELNRVLCE KLEDKMKGTV
0301: VEGTIQKLFE GHHMNYIECI NVDYKSTRKE SFYDLQLDVK GCKDVYASFD KYVEVERLEG DNKYHAEGHD LQDAKKGVLF IDFPPVLQLQ LKRFEYDFMR
0401: DTMVKINDRY EFPLQLDLDR EDGRYLSPDA DKSVRNLYTL HSVLVHSGGV HGGHYYAFIR PTLSDQWYKF DDERVTKEDV KRALEEQYGG EEELPQNNPG
0501: FNNPPFKFTK YSNAYMLVYI RESDKDKIIC NVDEKDIAEH LRVRLKKEQE EKEDKRKYKA QAHLFTTIKV ARDDDITEQI GKNIYFDLVD HEKVRSFRIQ
0601: KQTPFQQFKE EVAKEFGVPV QLQRFWIWAK RQNHTYRPNR PLSPNEELQT VGQIREASNK ANNAELKLFL EIERGPDDLP IPPPEKTSED ILLFFKLYDP
0701: ENAVLRYVGR LMVKSSSKPM DIVGQLNKMA GFAPDEEIEL FEEIKFEPCV MCEQIDKKTS FRLCQIEDGD IICYQKPLSI EESEFRYPDV PSFLEYVQNR
0801: ELVRFRTLEK PKEDEFTMEL SKLHTYDDVV ERVAEKLGLD DPSKLRLTSH NCYSQQPKPQ PIKYRGVDHL SDMLVHYNQT SDILYYEVLD IPLPELQGLK
0901: TLKVAFHSAT KDEVIIHNIR LPKQSTVGDV INELKTKVEL SHQDAELRLL EVFFHKIYKI FPSTERIENI NDQYWTLRAE EIPEEEKNIG PNDRLIHVYH
1001: FTKEAGQNQQ VQNFGEPFFL VIHEGETLEE IKTRIQKKLH VPDEDFAKWK FASFSMGRPD YLLDTDVVYN RFQRRDVYGA WEQYLGLEHI DNAPKRAYAA
1101: NQNRHAYEKP VKIYN

Arabidopsis Description

UBP13UBP13 [Source:UniProtKB/TrEMBL;Acc:A0A178VEE0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.