Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG34448 | Sorghum | nucleus | 92.52 | 92.93 |
| Zm00001d007904_P003 | Maize | cytosol | 92.25 | 89.23 |
| TraesCS2D01G249100.1 | Wheat | nucleus | 87.89 | 88.2 |
| TraesCS2A01G246800.3 | Wheat | golgi | 87.8 | 88.11 |
| TraesCS2B01G263500.4 | Wheat | nucleus | 87.71 | 88.03 |
| HORVU2Hr1G058700.4 | Barley | cytosol | 86.46 | 87.01 |
| Zm00001d041035_P002 | Maize | cytosol | 73.11 | 72.08 |
| Zm00001d023640_P004 | Maize | cytosol | 71.24 | 70.67 |
| Zm00001d043312_P001 | Maize | nucleus | 63.76 | 64.1 |
| Zm00001d052943_P023 | Maize | plastid | 65.09 | 54.59 |
| Zm00001d030958_P001 | Maize | nucleus | 8.55 | 21.05 |
| Zm00001d020157_P011 | Maize | cytosol, mitochondrion, nucleus | 14.78 | 15.24 |
| Zm00001d028177_P004 | Maize | cytosol | 14.51 | 15.19 |
| Zm00001d030960_P003 | Maize | nucleus | 13.36 | 13.35 |
| Zm00001d041395_P002 | Maize | nucleus | 13.0 | 13.14 |
| Zm00001d043294_P006 | Maize | nucleus | 13.71 | 12.03 |
| Zm00001d038655_P003 | Maize | nucleus | 12.82 | 11.08 |
| Zm00001d051075_P002 | Maize | nucleus | 14.25 | 9.45 |
| Zm00001d010716_P002 | Maize | nucleus | 11.04 | 9.42 |
| Zm00001d034390_P001 | Maize | nucleus | 2.14 | 9.3 |
Protein Annotations
| MapMan:14.6.2.3 | MapMan:19.2.3.1.1.5 | Gene3D:2.60.210.10 | Gene3D:3.10.20.90 | Gene3D:3.90.70.10 | UniProt:A0A1D6HSS3 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 |
| GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016579 |
| GO:GO:0016787 | GO:GO:0019538 | GO:GO:0036459 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:IPR028889 |
| InterPro:MATH/TRAF_dom | ProteinID:ONM51461.1 | PFAM:PF00443 | PFAM:PF00917 | PFAM:PF12436 | PFAM:PF14533 |
| ScanProsite:PS00972 | ScanProsite:PS00973 | PFscan:PS50144 | PFscan:PS50235 | PANTHER:PTHR24006 | PANTHER:PTHR24006:SF565 |
| InterPro:Papain_like_cys_pep_sf | InterPro:Peptidase_C19_UCH | SMART:SM00061 | SUPFAM:SSF49599 | SUPFAM:SSF54001 | InterPro:TRAF-like |
| UniParc:UPI0008431840 | InterPro:USP7_ICP0-binding_dom | InterPro:USP_C | InterPro:USP_CS | InterPro:USP_dom | EnsemblPlantsGene:Zm00001d018859 |
| EnsemblPlants:Zm00001d018859_P010 | EnsemblPlants:Zm00001d018859_T010 | SEG:seg | : | : | : |
Description
Ubiquitin carboxyl-terminal hydrolase 13
Coordinates
chr7:-:7531993..7554865
Molecular Weight (calculated)
131726.0 Da
IEP (calculated)
5.886
GRAVY (calculated)
-0.564
Length
1123 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTTSPPPAEQ QHEEEEVLVP YGPHLELPNG AQPMEVVPAE PAATVENQQI EDPPISRFTW TIENLSRVST KKLYSEIFVV GGYKWRILIF PRGNNVEFLS
0101: MYLDVADSGV LPYGWTRYAQ FSLSVVNQIH NKFTIRKETQ HQFSARESDW GFTSFMPLGE LYNHSRGYLV NDTCIVEAEV AVCKVVDYWS YDSKKETGYV
0201: GLKNQGATCY MNSLLQTLYH IPYFRKAVYH MPTTENDMPS GSIPLALQSL FYKLQYNDSS VSTKELTKSF GWDMHDSFMQ HDVQELNRVL SEKLEDKMKG
0301: TVVEGTIQQL FEGHHMNYID CNSNADLQLD VKGCQDVYAS FDKYVEVEQL EGDNKYHADK HGLQDAKKGV LFIDFPPVLQ LQLKRFEYDF MRDTMVKIND
0401: RYEFPLQLDL DRDDGKYLSP DADRNVRNLY TLHSVLVHSG GVHGGHYYAF IRPTLSDQWF KFDDERVTKE DAKRALEEQY GGEEELPQTN PGLNNTPFKF
0501: TKYSNAYMLV YIRESDKDKI ICNVDEKDIA EHLRIRLEKD REEKERRKKE KAEAHLYTII KVARDDDLKT QIGKDIYFDL VDHDKVPSFR IQKQMAFAQF
0601: KEEVAKEFGI PTQFQRFWLW AKRQNHTYRP NRPLCPQDEA HTDLKPLPLP DKTREDIFLL FKLYEPEKEQ LRYFSYIPTH HYLSYTQYLI FCWIFTPLLD
0701: GFFRYVGRLF VKASGRPQDI LPKLKMLAGF SQDDDIELYE EIKFEPNVMC EYIDNRLLFR SCQLEDGDII CFQKSSKADS ADRYRFPDVP SFLTYIRNRQ
0801: VVHFRSLEKP KEDDFFLEMS KIFTYDQVVE KVAEKLGVDD PSKIRLTSHN CYSQQPKPQP IKYRGVERLL DMLIHYNQTS DILYYEVLDI PLPELQALKT
0901: LKVTYHHATK DEVSVHSIRL PKNSTVGDVL NDIKTKVELS HPNAELRLLE VFYHKIYKVF APNEKIENIN DQYWTLRAEE VPDEEKNLGP FDRLIHVYHF
1001: TKDTQNQTQV QNFGEPFFMV IREDETLSSI KERIQRKLKV PDEDFSKVFS LYVSICVDFG TEFALSVLSV LTLFLLTSDL FKRNMYGAWE QYLGLEHPDT
1101: APRKAHTINQ NRHSFERPVK IYN
0101: MYLDVADSGV LPYGWTRYAQ FSLSVVNQIH NKFTIRKETQ HQFSARESDW GFTSFMPLGE LYNHSRGYLV NDTCIVEAEV AVCKVVDYWS YDSKKETGYV
0201: GLKNQGATCY MNSLLQTLYH IPYFRKAVYH MPTTENDMPS GSIPLALQSL FYKLQYNDSS VSTKELTKSF GWDMHDSFMQ HDVQELNRVL SEKLEDKMKG
0301: TVVEGTIQQL FEGHHMNYID CNSNADLQLD VKGCQDVYAS FDKYVEVEQL EGDNKYHADK HGLQDAKKGV LFIDFPPVLQ LQLKRFEYDF MRDTMVKIND
0401: RYEFPLQLDL DRDDGKYLSP DADRNVRNLY TLHSVLVHSG GVHGGHYYAF IRPTLSDQWF KFDDERVTKE DAKRALEEQY GGEEELPQTN PGLNNTPFKF
0501: TKYSNAYMLV YIRESDKDKI ICNVDEKDIA EHLRIRLEKD REEKERRKKE KAEAHLYTII KVARDDDLKT QIGKDIYFDL VDHDKVPSFR IQKQMAFAQF
0601: KEEVAKEFGI PTQFQRFWLW AKRQNHTYRP NRPLCPQDEA HTDLKPLPLP DKTREDIFLL FKLYEPEKEQ LRYFSYIPTH HYLSYTQYLI FCWIFTPLLD
0701: GFFRYVGRLF VKASGRPQDI LPKLKMLAGF SQDDDIELYE EIKFEPNVMC EYIDNRLLFR SCQLEDGDII CFQKSSKADS ADRYRFPDVP SFLTYIRNRQ
0801: VVHFRSLEKP KEDDFFLEMS KIFTYDQVVE KVAEKLGVDD PSKIRLTSHN CYSQQPKPQP IKYRGVERLL DMLIHYNQTS DILYYEVLDI PLPELQALKT
0901: LKVTYHHATK DEVSVHSIRL PKNSTVGDVL NDIKTKVELS HPNAELRLLE VFYHKIYKVF APNEKIENIN DQYWTLRAEE VPDEEKNLGP FDRLIHVYHF
1001: TKDTQNQTQV QNFGEPFFMV IREDETLSSI KERIQRKLKV PDEDFSKVFS LYVSICVDFG TEFALSVLSV LTLFLLTSDL FKRNMYGAWE QYLGLEHPDT
1101: APRKAHTINQ NRHSFERPVK IYN
0001: MTMMTPPPLD QQEDEEMLVP NPDLVEGPQP MEVAQTDPAA TAVENPPPED PPSLKFTWTI PMFTRLNTRK HYSDVFVVGG YKWRILIFPK GNNVDHLSMY
0101: LDVADAANLP YGWSRYSQFS LAVVNQVNNR YSIRKETQHQ FNARESDWGF TSFMPLSELY EPTRGYLVND TVLIEAEVAV RKVLDYWSYD SKKETGFVGL
0201: KNQGATCYMN SLLQTLYHIP YFRKAVYHMP TTENDAPTAS IPLALQSLFY KLQYNDTSVA TKELTKSFGW DTYDSFMQHD VQELNRVLCE KLEDKMKGTV
0301: VEGTIQKLFE GHHMNYIECI NVDYKSTRKE SFYDLQLDVK GCKDVYASFD KYVEVERLEG DNKYHAEGHD LQDAKKGVLF IDFPPVLQLQ LKRFEYDFMR
0401: DTMVKINDRY EFPLQLDLDR EDGRYLSPDA DKSVRNLYTL HSVLVHSGGV HGGHYYAFIR PTLSDQWYKF DDERVTKEDV KRALEEQYGG EEELPQNNPG
0501: FNNPPFKFTK YSNAYMLVYI RESDKDKIIC NVDEKDIAEH LRVRLKKEQE EKEDKRKYKA QAHLFTTIKV ARDDDITEQI GKNIYFDLVD HEKVRSFRIQ
0601: KQTPFQQFKE EVAKEFGVPV QLQRFWIWAK RQNHTYRPNR PLSPNEELQT VGQIREASNK ANNAELKLFL EIERGPDDLP IPPPEKTSED ILLFFKLYDP
0701: ENAVLRYVGR LMVKSSSKPM DIVGQLNKMA GFAPDEEIEL FEEIKFEPCV MCEQIDKKTS FRLCQIEDGD IICYQKPLSI EESEFRYPDV PSFLEYVQNR
0801: ELVRFRTLEK PKEDEFTMEL SKLHTYDDVV ERVAEKLGLD DPSKLRLTSH NCYSQQPKPQ PIKYRGVDHL SDMLVHYNQT SDILYYEVLD IPLPELQGLK
0901: TLKVAFHSAT KDEVIIHNIR LPKQSTVGDV INELKTKVEL SHQDAELRLL EVFFHKIYKI FPSTERIENI NDQYWTLRAE EIPEEEKNIG PNDRLIHVYH
1001: FTKEAGQNQQ VQNFGEPFFL VIHEGETLEE IKTRIQKKLH VPDEDFAKWK FASFSMGRPD YLLDTDVVYN RFQRRDVYGA WEQYLGLEHI DNAPKRAYAA
1101: NQNRHAYEKP VKIYN
0101: LDVADAANLP YGWSRYSQFS LAVVNQVNNR YSIRKETQHQ FNARESDWGF TSFMPLSELY EPTRGYLVND TVLIEAEVAV RKVLDYWSYD SKKETGFVGL
0201: KNQGATCYMN SLLQTLYHIP YFRKAVYHMP TTENDAPTAS IPLALQSLFY KLQYNDTSVA TKELTKSFGW DTYDSFMQHD VQELNRVLCE KLEDKMKGTV
0301: VEGTIQKLFE GHHMNYIECI NVDYKSTRKE SFYDLQLDVK GCKDVYASFD KYVEVERLEG DNKYHAEGHD LQDAKKGVLF IDFPPVLQLQ LKRFEYDFMR
0401: DTMVKINDRY EFPLQLDLDR EDGRYLSPDA DKSVRNLYTL HSVLVHSGGV HGGHYYAFIR PTLSDQWYKF DDERVTKEDV KRALEEQYGG EEELPQNNPG
0501: FNNPPFKFTK YSNAYMLVYI RESDKDKIIC NVDEKDIAEH LRVRLKKEQE EKEDKRKYKA QAHLFTTIKV ARDDDITEQI GKNIYFDLVD HEKVRSFRIQ
0601: KQTPFQQFKE EVAKEFGVPV QLQRFWIWAK RQNHTYRPNR PLSPNEELQT VGQIREASNK ANNAELKLFL EIERGPDDLP IPPPEKTSED ILLFFKLYDP
0701: ENAVLRYVGR LMVKSSSKPM DIVGQLNKMA GFAPDEEIEL FEEIKFEPCV MCEQIDKKTS FRLCQIEDGD IICYQKPLSI EESEFRYPDV PSFLEYVQNR
0801: ELVRFRTLEK PKEDEFTMEL SKLHTYDDVV ERVAEKLGLD DPSKLRLTSH NCYSQQPKPQ PIKYRGVDHL SDMLVHYNQT SDILYYEVLD IPLPELQGLK
0901: TLKVAFHSAT KDEVIIHNIR LPKQSTVGDV INELKTKVEL SHQDAELRLL EVFFHKIYKI FPSTERIENI NDQYWTLRAE EIPEEEKNIG PNDRLIHVYH
1001: FTKEAGQNQQ VQNFGEPFFL VIHEGETLEE IKTRIQKKLH VPDEDFAKWK FASFSMGRPD YLLDTDVVYN RFQRRDVYGA WEQYLGLEHI DNAPKRAYAA
1101: NQNRHAYEKP VKIYN
Arabidopsis Description
UBP13UBP13 [Source:UniProtKB/TrEMBL;Acc:A0A178VEE0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.