Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES07147 | Sorghum | nucleus, plastid | 93.38 | 94.95 |
| TraesCS6A01G230500.1 | Wheat | nucleus, plastid | 79.5 | 81.23 |
| TraesCS6D01G204500.1 | Wheat | nucleus, plastid | 79.56 | 81.05 |
| TraesCS6B01G251400.1 | Wheat | nucleus, plastid | 79.15 | 80.63 |
| HORVU0Hr1G016000.5 | Barley | nucleus | 78.62 | 79.61 |
| Os02t0613400-01 | Rice | extracellular | 12.88 | 73.9 |
| GSMUA_Achr5P23550_001 | Banana | plastid | 50.38 | 64.92 |
| GSMUA_Achr6P03030_001 | Banana | cytosol, nucleus, plastid | 31.9 | 64.21 |
| VIT_04s0008g05690.t01 | Wine grape | nucleus | 60.31 | 60.67 |
| KRH52412 | Soybean | nucleus | 59.72 | 60.21 |
| AT2G25330.1 | Thale cress | nucleus | 24.28 | 59.31 |
| GSMUA_Achr6P03040_001 | Banana | nucleus | 15.77 | 58.94 |
| KRH61745 | Soybean | nucleus | 34.08 | 58.94 |
| Solyc06g017970.2.1 | Tomato | nucleus | 57.77 | 57.84 |
| KRH61744 | Soybean | cytosol | 21.5 | 56.79 |
| AT2G25320.3 | Thale cress | nucleus, plastid | 54.93 | 55.56 |
| CDY11532 | Canola | nucleus, plastid | 54.16 | 55.51 |
| Bra007802.1-P | Field mustard | nucleus, plastid | 54.52 | 55.47 |
| CDY58924 | Canola | nucleus, plastid | 54.11 | 55.38 |
| CDX76975 | Canola | nucleus, plastid | 53.51 | 55.35 |
| Bra034251.1-P | Field mustard | nucleus | 53.63 | 55.13 |
| CDY35362 | Canola | nucleus, plastid | 53.4 | 54.89 |
| VIT_11s0016g05880.t01 | Wine grape | mitochondrion | 44.24 | 49.37 |
| Zm00001d041035_P002 | Maize | cytosol | 10.16 | 15.1 |
| Zm00001d023640_P004 | Maize | cytosol | 9.75 | 14.58 |
| Zm00001d018859_P010 | Maize | cytosol | 9.45 | 14.25 |
| Zm00001d007904_P003 | Maize | cytosol | 9.63 | 14.04 |
| Zm00001d043312_P001 | Maize | nucleus | 9.21 | 13.97 |
| Zm00001d030958_P001 | Maize | nucleus | 3.31 | 12.28 |
| Zm00001d030960_P003 | Maize | nucleus | 7.32 | 11.03 |
| Zm00001d052943_P023 | Maize | plastid | 8.62 | 10.9 |
| Zm00001d041395_P002 | Maize | nucleus | 6.97 | 10.62 |
| Zm00001d020157_P011 | Maize | cytosol, mitochondrion, nucleus | 6.5 | 10.1 |
| Zm00001d028177_P004 | Maize | cytosol | 6.38 | 10.07 |
| Zm00001d043294_P006 | Maize | nucleus | 6.73 | 8.91 |
| Zm00001d038655_P003 | Maize | nucleus | 6.79 | 8.85 |
| Zm00001d010716_P002 | Maize | nucleus | 5.97 | 7.67 |
| Zm00001d034390_P001 | Maize | nucleus | 0.59 | 3.88 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.1 | UniProt:A0A1D6Q4U1 | ProteinID:AQK53568.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | PFAM:PD936484 |
| PFAM:PF00917 | PFscan:PS50144 | PANTHER:PTHR24007 | PANTHER:PTHR24007:SF6 | SMART:SM00061 | SUPFAM:SSF49599 |
| InterPro:TRAF-like | UniParc:UPI0008453374 | EnsemblPlantsGene:Zm00001d051075 | EnsemblPlants:Zm00001d051075_P002 | EnsemblPlants:Zm00001d051075_T002 | SEG:seg |
Description
TRAF-like family protein
Coordinates
chr4:-:140677217..140705861
Molecular Weight (calculated)
187801.0 Da
IEP (calculated)
5.203
GRAVY (calculated)
-0.365
Length
1693 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSQRPRKKNR EKTHPEKQTK NPQSMKPTTS AAAAAVAAVT VTTDDPSPSP SDSTSATFTV DRRGDASASC RWTLPDFPRT RARTFYSRYF EVGGFDCRLL
0101: LYPRGDSQAL PGYLSLYLQV LDPKAPVSSS SSTTTTTSSK WDCFLSYRLS VVHPTDPAKS LGRDSWHRFS SKKRSHGWCD FAPSSSAPFL FQPHDALVIS
0201: ADISVLSEAA SFSDADGRFN WKVLNFGLFR EMIRTQKIMS PAFFPASASA GGTDCGLRIS VYQSNVSGAE HLSVCLESKE PVVQVASGSS ALASGGTGSG
0301: VPDGDRGCWC LFRISILNQR SGGSHIHKDS YGRFGADSAS LGWGEYIKMD EFLAADGGYL VDGAVVFSAS VHVIKESNSF SRSLPMVPGI CGAGGGRAGA
0401: RKSDGHFGKF VWRIESFTRL KELLKKRKIA GLCIKSRRFQ VGNRDCRLIV YPRGQSQPPC HLSVFLEVTD PRNTTTEWSC FVSHRLSVIN QKVEEKSIMK
0501: ESQNRYSKSA KDWGWREFVT LTSLFDQDAG FLVQDTVVFS AEVLILKETA TMQELTDEDS ETCSSTYGCQ IEALPKRPSF TWKVENFVSF KEIMESRKIF
0601: SKFFQAGGCE LRIGVYESFD TICIYLESDQ SSGYDPDKNF WVHYKMAIVN QKNSAKTVCK ESSICTKTWN NSVLQFMKTS DMVDTDAGFL VRDTVIFTCE
0701: IIDCCPWFDF SDLEVWASDD DQDELSTDPD ELVDSEESED MSGDEEDMFR NLLLRAGFCL TYKDNYTQPQ VILREKIITD ATAIAGFLTD LRVYLDNPAK
0801: VKRMLLPTKV STKSGGTKDT SKCDSSSSST SLITLLMGIS ALKQAIIDLL LDIMVECCQP SEESGSSAST KAFPDSNGAS SPPELSVEGD LTEYACSDVY
0901: ARVESNSDDI RDSPVICNAG LAATEIAVNN IEHSCFPPET SAADLPADEG SEQASWSKCP EQSEELLGLI VNSLRALDST VPHGCCEPRR RPQAVRKIAL
1001: VLEKAPKQLQ QDLISLVPKL VDGSEHSLAA CALLDHLQRP DAEPSLRLPV FGALSELELE SDIWKQASVH ALELLSDSND EPLVAAITYV LKAASQCEHL
1101: SVAVRAVRWR LKDLGTEVPH CVLDFLSKTI QTQLDVAEAI LKDIDSDCEP ENNCLASTSP SSTCSTDGLS AEGMYSWQEQ AVHGRSHLSD VFALIEMLSM
1201: PGLFVEVAQV IERALLRGSF GLQLVAMVLE RRHSYRSSSK SGSVVNDSQN KEVLLDGQFE PLSVQENDFT SVLALGEVLS LSTETKVQDF VRMLYAIIFK
1301: IYAEDHHRYR ILKGLVERAT NTSDNCRAVD IDMDVLVFLV KEEYGIARPV LNMMCEVAEV AQADRANLWH QICATEDENI RLREDMEMEQ TNFTNEKIAL
1401: NQRLTELEAT IGSLRSELKA ERDRFTREKK ALSDQMREIE NQLEWVRSEK DDQIAKLSSE KRNLHDRLND AESQLALVKA RKREELKKVT KEKNTLAEQL
1501: KNAEASRKRF DDELKRYAAE TQTREEIRKS LENEVRRLTQ TVGQTEGEKR EKEEQITRCE AYIDGMESKL QVCQQYIRTL ETSLQEEVAR HAPLYGVGVE
1601: SLSFNELEAL ANIHEQSLRQ IKAIQQRKGS SHLLGGTALS HIPALFSPPP PSAAVGSPAS RIPASPMAPN GAGMHGNGHH MNSTTGGRWF NPS
0101: LYPRGDSQAL PGYLSLYLQV LDPKAPVSSS SSTTTTTSSK WDCFLSYRLS VVHPTDPAKS LGRDSWHRFS SKKRSHGWCD FAPSSSAPFL FQPHDALVIS
0201: ADISVLSEAA SFSDADGRFN WKVLNFGLFR EMIRTQKIMS PAFFPASASA GGTDCGLRIS VYQSNVSGAE HLSVCLESKE PVVQVASGSS ALASGGTGSG
0301: VPDGDRGCWC LFRISILNQR SGGSHIHKDS YGRFGADSAS LGWGEYIKMD EFLAADGGYL VDGAVVFSAS VHVIKESNSF SRSLPMVPGI CGAGGGRAGA
0401: RKSDGHFGKF VWRIESFTRL KELLKKRKIA GLCIKSRRFQ VGNRDCRLIV YPRGQSQPPC HLSVFLEVTD PRNTTTEWSC FVSHRLSVIN QKVEEKSIMK
0501: ESQNRYSKSA KDWGWREFVT LTSLFDQDAG FLVQDTVVFS AEVLILKETA TMQELTDEDS ETCSSTYGCQ IEALPKRPSF TWKVENFVSF KEIMESRKIF
0601: SKFFQAGGCE LRIGVYESFD TICIYLESDQ SSGYDPDKNF WVHYKMAIVN QKNSAKTVCK ESSICTKTWN NSVLQFMKTS DMVDTDAGFL VRDTVIFTCE
0701: IIDCCPWFDF SDLEVWASDD DQDELSTDPD ELVDSEESED MSGDEEDMFR NLLLRAGFCL TYKDNYTQPQ VILREKIITD ATAIAGFLTD LRVYLDNPAK
0801: VKRMLLPTKV STKSGGTKDT SKCDSSSSST SLITLLMGIS ALKQAIIDLL LDIMVECCQP SEESGSSAST KAFPDSNGAS SPPELSVEGD LTEYACSDVY
0901: ARVESNSDDI RDSPVICNAG LAATEIAVNN IEHSCFPPET SAADLPADEG SEQASWSKCP EQSEELLGLI VNSLRALDST VPHGCCEPRR RPQAVRKIAL
1001: VLEKAPKQLQ QDLISLVPKL VDGSEHSLAA CALLDHLQRP DAEPSLRLPV FGALSELELE SDIWKQASVH ALELLSDSND EPLVAAITYV LKAASQCEHL
1101: SVAVRAVRWR LKDLGTEVPH CVLDFLSKTI QTQLDVAEAI LKDIDSDCEP ENNCLASTSP SSTCSTDGLS AEGMYSWQEQ AVHGRSHLSD VFALIEMLSM
1201: PGLFVEVAQV IERALLRGSF GLQLVAMVLE RRHSYRSSSK SGSVVNDSQN KEVLLDGQFE PLSVQENDFT SVLALGEVLS LSTETKVQDF VRMLYAIIFK
1301: IYAEDHHRYR ILKGLVERAT NTSDNCRAVD IDMDVLVFLV KEEYGIARPV LNMMCEVAEV AQADRANLWH QICATEDENI RLREDMEMEQ TNFTNEKIAL
1401: NQRLTELEAT IGSLRSELKA ERDRFTREKK ALSDQMREIE NQLEWVRSEK DDQIAKLSSE KRNLHDRLND AESQLALVKA RKREELKKVT KEKNTLAEQL
1501: KNAEASRKRF DDELKRYAAE TQTREEIRKS LENEVRRLTQ TVGQTEGEKR EKEEQITRCE AYIDGMESKL QVCQQYIRTL ETSLQEEVAR HAPLYGVGVE
1601: SLSFNELEAL ANIHEQSLRQ IKAIQQRKGS SHLLGGTALS HIPALFSPPP PSAAVGSPAS RIPASPMAPN GAGMHGNGHH MNSTTGGRWF NPS
0001: MKQSSSEAVS SSSSSAAADQ SHPSVSSSSS EKPLSSSSIS PAEDLQVGSS RDGSGGAQEI VAVDRPGEYS ALCRWTVESF TRVKAKALWS KYFDVGGYDC
0101: RLLVYPRGDS QALPGYISIY LQIMDPRGTT SSRWDCFASY RLSIVNLVDD SLTIHKDSWH RFSSKKKSHG WCDFTLNSSI LDPKMGFLFN NDSLLITADI
0201: LILNESVSFS RDNNNEGQSL YKENSIAGPM PDVLSGKFTW KVNNFSLFKD MIKTQKIMSP VFPAGECNLR ISVYQSVVNS QEYISMCLES KETEKTLVSD
0301: RSCWCLFRMS ALNQKPGCTH MHRDSYGRFA ADNKSGDNTS LGWNDYMKMS EFVNPEAGFL LDDMAVFSTS FHVIKEFSSF TKNGGLIGGR NGAGARKSDG
0401: HMGKFTWRIE NFTRLKDLLK KRKITGLCIK SKRFQIGNRD CRLIVYPRGQ SQPPCHLSVF LEVTDSRSSS DWSCFVSHRL SVVNQRLEEK SVTKESQNRY
0501: SKAAKDWGWR EFVTLTSLFD QDSGFLVQDT VVFSAEVLIL KETSATKEYV EADSTNSVSP TDNSVKKSSF TWKVENFLAF KEIMETRKIF SKFFQAGGCE
0601: LRIGVYESFD TICIYLESDQ SAGTDVDNNF WVKYKMGILN QKNPAKSVWK ESSICTKTWN NSVLQFMKVS DMLEADAGFL VRDTVVFVCE ILDCCPWFEF
0701: SDLEVLASDD DQDALTTDPD EIIDSEESEG ISGDEEDTFR DFLSRAGFHL TFGENPSQPQ VTLREKLLMD AGAIAGFLTG LRVYLDDPTK VKRLLLPTKI
0801: SCNDRSKLIK SDESSPSLMN LLMGVKVLQQ AIIDLLLDIM VECCQPSEEG SHSEPSLLSP KTDGCVAATS SESTRERGAA EPSQHLVDER FKSDTDATLS
0901: TSAVPSSEMN GIDLLEKALA IEPMSPPTTS AGQSSDASVQ SKTKWPEQSE ELLGLIVNSL KTLDAAVPQG CPEPRRRPHS AQKIALVLDR APKHLQPDLV
1001: SLVPKLVEHS EHPLAALALI ERLQKPEAEP ALREPVYNAL SQLECDSEVW EDILSQSFEL LSDLNEESLV AAIHFTFKTA SQCQHLPEAV NAVRERLKSL
1101: GADVSLCVLD YLSKTVHSWP GIAEMILRDI NTDDSVGANF ATLPCGPFLI GENETASEMA DLMEEHIFYA NRQFFDVYIL LEMLSISCLA EEASQTFERA
1201: VARGAIVAQA VAMVLEKQRV QSPNLNATSG DASLKHQDPV LEGEASEQPA TGGTEFRIIL NLAETLTHSR DPQVRGFVKM LYTILFKWFP DQPFRVQILR
1301: RLVDRFTSPT SSSHDLDLEL EILAILIFQE QEVARPVLAM LKKVVEHANI DRAALWHQLR ANKEELVRLK EEKKIEIQSM TKEKSSITQK LSESEAANTR
1401: LKSEMKAEAD RFSREKKDLV EQFRDVESQL EWIRSERQDE IDKLSSEKKT LLDRLHEAET QLALQKTRKR DELKKVGKEK NALTEKLKVT EAARKRFEEE
1501: LKRYATENVT REELRKSLED QIRQLTQTVG QTKEEKREKE DQIARCEAYI DGMESKLQAC QQYIHTLESS LREEISRHAP LYGANLESLS MKELDTIARI
1601: HEEGLRQIHA LQQRKGHTLS HGLPQGHTLY PTTPPQLPPM AIGLPPQLIP NGSGVHSNGH INGSVRPWFS HHT
0101: RLLVYPRGDS QALPGYISIY LQIMDPRGTT SSRWDCFASY RLSIVNLVDD SLTIHKDSWH RFSSKKKSHG WCDFTLNSSI LDPKMGFLFN NDSLLITADI
0201: LILNESVSFS RDNNNEGQSL YKENSIAGPM PDVLSGKFTW KVNNFSLFKD MIKTQKIMSP VFPAGECNLR ISVYQSVVNS QEYISMCLES KETEKTLVSD
0301: RSCWCLFRMS ALNQKPGCTH MHRDSYGRFA ADNKSGDNTS LGWNDYMKMS EFVNPEAGFL LDDMAVFSTS FHVIKEFSSF TKNGGLIGGR NGAGARKSDG
0401: HMGKFTWRIE NFTRLKDLLK KRKITGLCIK SKRFQIGNRD CRLIVYPRGQ SQPPCHLSVF LEVTDSRSSS DWSCFVSHRL SVVNQRLEEK SVTKESQNRY
0501: SKAAKDWGWR EFVTLTSLFD QDSGFLVQDT VVFSAEVLIL KETSATKEYV EADSTNSVSP TDNSVKKSSF TWKVENFLAF KEIMETRKIF SKFFQAGGCE
0601: LRIGVYESFD TICIYLESDQ SAGTDVDNNF WVKYKMGILN QKNPAKSVWK ESSICTKTWN NSVLQFMKVS DMLEADAGFL VRDTVVFVCE ILDCCPWFEF
0701: SDLEVLASDD DQDALTTDPD EIIDSEESEG ISGDEEDTFR DFLSRAGFHL TFGENPSQPQ VTLREKLLMD AGAIAGFLTG LRVYLDDPTK VKRLLLPTKI
0801: SCNDRSKLIK SDESSPSLMN LLMGVKVLQQ AIIDLLLDIM VECCQPSEEG SHSEPSLLSP KTDGCVAATS SESTRERGAA EPSQHLVDER FKSDTDATLS
0901: TSAVPSSEMN GIDLLEKALA IEPMSPPTTS AGQSSDASVQ SKTKWPEQSE ELLGLIVNSL KTLDAAVPQG CPEPRRRPHS AQKIALVLDR APKHLQPDLV
1001: SLVPKLVEHS EHPLAALALI ERLQKPEAEP ALREPVYNAL SQLECDSEVW EDILSQSFEL LSDLNEESLV AAIHFTFKTA SQCQHLPEAV NAVRERLKSL
1101: GADVSLCVLD YLSKTVHSWP GIAEMILRDI NTDDSVGANF ATLPCGPFLI GENETASEMA DLMEEHIFYA NRQFFDVYIL LEMLSISCLA EEASQTFERA
1201: VARGAIVAQA VAMVLEKQRV QSPNLNATSG DASLKHQDPV LEGEASEQPA TGGTEFRIIL NLAETLTHSR DPQVRGFVKM LYTILFKWFP DQPFRVQILR
1301: RLVDRFTSPT SSSHDLDLEL EILAILIFQE QEVARPVLAM LKKVVEHANI DRAALWHQLR ANKEELVRLK EEKKIEIQSM TKEKSSITQK LSESEAANTR
1401: LKSEMKAEAD RFSREKKDLV EQFRDVESQL EWIRSERQDE IDKLSSEKKT LLDRLHEAET QLALQKTRKR DELKKVGKEK NALTEKLKVT EAARKRFEEE
1501: LKRYATENVT REELRKSLED QIRQLTQTVG QTKEEKREKE DQIARCEAYI DGMESKLQAC QQYIHTLESS LREEISRHAP LYGANLESLS MKELDTIARI
1601: HEEGLRQIHA LQQRKGHTLS HGLPQGHTLY PTTPPQLPPM AIGLPPQLIP NGSGVHSNGH INGSVRPWFS HHT
Arabidopsis Description
TRAF-like family protein [Source:TAIR;Acc:AT2G25320]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.