Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11532 | Canola | nucleus, plastid | 89.49 | 90.68 |
| Bra007802.1-P | Field mustard | nucleus, plastid | 89.9 | 90.44 |
| CDY58924 | Canola | nucleus, plastid | 88.83 | 89.9 |
| CDX76975 | Canola | nucleus, plastid | 87.28 | 89.25 |
| Bra034251.1-P | Field mustard | nucleus | 86.98 | 88.4 |
| CDY35362 | Canola | nucleus, plastid | 86.8 | 88.22 |
| AT2G25330.1 | Thale cress | nucleus | 35.48 | 85.71 |
| KRH61745 | Soybean | nucleus | 43.67 | 74.67 |
| VIT_04s0008g05690.t01 | Wine grape | nucleus | 73.3 | 72.91 |
| KRH52412 | Soybean | nucleus | 72.76 | 72.54 |
| Solyc06g017970.2.1 | Tomato | nucleus | 70.49 | 69.78 |
| KRH61744 | Soybean | cytosol | 24.37 | 63.65 |
| GSMUA_Achr6P03040_001 | Banana | nucleus | 16.49 | 60.93 |
| GSMUA_Achr5P23550_001 | Banana | plastid | 47.49 | 60.5 |
| Os02t0613400-01 | Rice | extracellular | 10.63 | 60.34 |
| GSMUA_Achr6P03030_001 | Banana | cytosol, nucleus, plastid | 28.55 | 56.84 |
| TraesCS6A01G230500.1 | Wheat | nucleus, plastid | 56.09 | 56.67 |
| TraesCS6B01G251400.1 | Wheat | nucleus, plastid | 56.09 | 56.5 |
| TraesCS6D01G204500.1 | Wheat | nucleus, plastid | 56.03 | 56.44 |
| EES07147 | Sorghum | nucleus, plastid | 55.97 | 56.28 |
| HORVU0Hr1G016000.5 | Barley | nucleus | 55.79 | 55.86 |
| Zm00001d051075_P002 | Maize | nucleus | 55.56 | 54.93 |
| AT5G06600.1 | Thale cress | cytosol | 10.99 | 16.49 |
| AT3G11910.1 | Thale cress | cytosol | 10.57 | 15.87 |
| AT5G52330.3 | Thale cress | cytosol | 3.29 | 13.85 |
| AT4G16045.1 | Thale cress | cytosol | 2.63 | 11.52 |
| AT3G49600.1 | Thale cress | cytosol | 6.51 | 10.22 |
| AT5G43560.1 | Thale cress | nucleus | 6.39 | 10.14 |
| AT1G04300.3 | Thale cress | nucleus | 6.45 | 9.98 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.1 | EntrezGene:817070 | UniProt:A0A178VY62 | UniProt:A0A1P8B0P7 | ProteinID:ANM62450.1 |
| InterPro:ARM-type_fold | ArrayExpress:AT2G25320 | EnsemblPlantsGene:AT2G25320 | RefSeq:AT2G25320 | TAIR:AT2G25320 | RefSeq:AT2G25320-TAIR-G |
| EnsemblPlants:AT2G25320.3 | Unigene:At.14344 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | RefSeq:NP_001324607.1 | ProteinID:OAP09742.1 | PFAM:PF00917 |
| PFscan:PS50144 | PANTHER:PTHR24007 | PANTHER:PTHR24007:SF6 | SMART:SM00061 | SUPFAM:SSF48371 | SUPFAM:SSF49599 |
| InterPro:TRAF-like | UniParc:UPI0007E29CDD | SEG:seg | : | : | : |
Description
TRAF-like family protein [Source:TAIR;Acc:AT2G25320]
Coordinates
chr2:-:10781622..10788235
Molecular Weight (calculated)
187817.0 Da
IEP (calculated)
5.399
GRAVY (calculated)
-0.412
Length
1674 amino acids
Sequence
(BLAST)
(BLAST)
0001: MMKQSSSEAV SSSSSSAAAD QSHPSVSSSS SEKPLSSSSI SPAEDLQVGS SRDGSGGAQE IVAVDRPGEY SALCRWTVES FTRVKAKALW SKYFDVGGYD
0101: CRLLVYPRGD SQALPGYISI YLQIMDPRGT TSSRWDCFAS YRLSIVNLVD DSLTIHKDSW HRFSSKKKSH GWCDFTLNSS ILDPKMGFLF NNDSLLITAD
0201: ILILNESVSF SRDNNNEGQS LYKENSIAGP MPDVLSGKFT WKVNNFSLFK DMIKTQKIMS PVFPAGECNL RISVYQSVVN SQEYISMCLE SKETEKTLVS
0301: DRSCWCLFRM SALNQKPGCT HMHRDSYGRF AADNKSGDNT SLGWNDYMKM SEFVNPEAGF LLDDMAVFST SFHVIKEFSS FTKNGGLIGG RNGAGARKSD
0401: GHMGKFTWRI ENFTRLKDLL KKRKITGLCI KSKRFQIGNR DCRLIVYPRG QSQPPCHLSV FLEVTDSRSS SDWSCFVSHR LSVVNQRLEE KSVTKESQNR
0501: YSKAAKDWGW REFVTLTSLF DQDSGFLVQD TVVFSAEVLI LKETSATKEY VEADSTNSVS PTDNSVKKSS FTWKVENFLA FKEIMETRKI FSKFFQAGGC
0601: ELRIGVYESF DTICIYLESD QSAGTDVDNN FWVKYKMGIL NQKNPAKSVW KESSICTKTW NNSVLQFMKV SDMLEADAGF LVRDTVVFVC EILDCCPWFE
0701: FSDLEVLASD DDQDALTTDP DEIIDSEESE GISGDEEDTF RDFLSRAGFH LTFGENPSQP QVTLREKLLM DAGAIAGFLT GLRVYLDDPT KVKRLLLPTK
0801: ISCNDRSKLI KSDESSPSLM NLLMGVKVLQ QAIIDLLLDI MVECCQPSEE GSHSEPSLLS PKTDGCVAAT SSESTRERGA AEPSQHLVDE RFKSDTDATL
0901: STSAVPSSEM NGIDLLEKAL AIEPMSPPTT SAGQSSDASV QSKTKWPEQS EELLGLIVNS LKTLDAAVPQ GCPEPRRRPH SAQKIALVLD RAPKHLQPDL
1001: VSLVPKLVEH SEHPLAALAL IERLQKPEAE PALREPVYNA LSQLECDSEV WEDILSQSFE LLSDLNEESL VAAIHFTFKT ASQCQHLPEA VNAVRERLKS
1101: LGADVSLCVL DYLSKTVHSW PGIAEMILRD INTDDSVGAN FATLPCGPFL IGENETASEM ADLMEEHIFY ANRQFFDVYI LLEMLSISCL AEEASQTFER
1201: AVARGAIVAQ AVAMVLEKQR VQSPNLNATS GDASLKHQDP VLEGEASEQP ATGGTEFRII LNLAETLTHS RDPQVRGFVK MLYTILFKWF PDQPFRVQIL
1301: RRLVDRFTSP TSSSHDLDLE LEILAILIFQ EQEVARPVLA MLKKVVEHAN IDRAALWHQL RANKEELVRL KEEKKIEIQS MTKEKSSITQ KLSESEAANT
1401: RLKSEMKAEA DRFSREKKDL VEQFRDVESQ LEWIRSERQD EIDKLSSEKK TLLDRLHEAE TQLALQKTRK RDELKKVGKE KNALTEKLKV TEAARKRFEE
1501: ELKRYATENV TREELRKSLE DQIRQLTQTV GQTKEEKREK EDQIARCEAY IDGMESKLQA CQQYIHTLES SLREEISRHA PLYGANLESL SMKELDTIAR
1601: IHEEGLRQIH ALQQRKGHTL SHGLPQGHTL YPTTPPQLPP MAIGLPPQLI PNGSGVHSNG HINGSVRPWF SHHT
0101: CRLLVYPRGD SQALPGYISI YLQIMDPRGT TSSRWDCFAS YRLSIVNLVD DSLTIHKDSW HRFSSKKKSH GWCDFTLNSS ILDPKMGFLF NNDSLLITAD
0201: ILILNESVSF SRDNNNEGQS LYKENSIAGP MPDVLSGKFT WKVNNFSLFK DMIKTQKIMS PVFPAGECNL RISVYQSVVN SQEYISMCLE SKETEKTLVS
0301: DRSCWCLFRM SALNQKPGCT HMHRDSYGRF AADNKSGDNT SLGWNDYMKM SEFVNPEAGF LLDDMAVFST SFHVIKEFSS FTKNGGLIGG RNGAGARKSD
0401: GHMGKFTWRI ENFTRLKDLL KKRKITGLCI KSKRFQIGNR DCRLIVYPRG QSQPPCHLSV FLEVTDSRSS SDWSCFVSHR LSVVNQRLEE KSVTKESQNR
0501: YSKAAKDWGW REFVTLTSLF DQDSGFLVQD TVVFSAEVLI LKETSATKEY VEADSTNSVS PTDNSVKKSS FTWKVENFLA FKEIMETRKI FSKFFQAGGC
0601: ELRIGVYESF DTICIYLESD QSAGTDVDNN FWVKYKMGIL NQKNPAKSVW KESSICTKTW NNSVLQFMKV SDMLEADAGF LVRDTVVFVC EILDCCPWFE
0701: FSDLEVLASD DDQDALTTDP DEIIDSEESE GISGDEEDTF RDFLSRAGFH LTFGENPSQP QVTLREKLLM DAGAIAGFLT GLRVYLDDPT KVKRLLLPTK
0801: ISCNDRSKLI KSDESSPSLM NLLMGVKVLQ QAIIDLLLDI MVECCQPSEE GSHSEPSLLS PKTDGCVAAT SSESTRERGA AEPSQHLVDE RFKSDTDATL
0901: STSAVPSSEM NGIDLLEKAL AIEPMSPPTT SAGQSSDASV QSKTKWPEQS EELLGLIVNS LKTLDAAVPQ GCPEPRRRPH SAQKIALVLD RAPKHLQPDL
1001: VSLVPKLVEH SEHPLAALAL IERLQKPEAE PALREPVYNA LSQLECDSEV WEDILSQSFE LLSDLNEESL VAAIHFTFKT ASQCQHLPEA VNAVRERLKS
1101: LGADVSLCVL DYLSKTVHSW PGIAEMILRD INTDDSVGAN FATLPCGPFL IGENETASEM ADLMEEHIFY ANRQFFDVYI LLEMLSISCL AEEASQTFER
1201: AVARGAIVAQ AVAMVLEKQR VQSPNLNATS GDASLKHQDP VLEGEASEQP ATGGTEFRII LNLAETLTHS RDPQVRGFVK MLYTILFKWF PDQPFRVQIL
1301: RRLVDRFTSP TSSSHDLDLE LEILAILIFQ EQEVARPVLA MLKKVVEHAN IDRAALWHQL RANKEELVRL KEEKKIEIQS MTKEKSSITQ KLSESEAANT
1401: RLKSEMKAEA DRFSREKKDL VEQFRDVESQ LEWIRSERQD EIDKLSSEKK TLLDRLHEAE TQLALQKTRK RDELKKVGKE KNALTEKLKV TEAARKRFEE
1501: ELKRYATENV TREELRKSLE DQIRQLTQTV GQTKEEKREK EDQIARCEAY IDGMESKLQA CQQYIHTLES SLREEISRHA PLYGANLESL SMKELDTIAR
1601: IHEEGLRQIH ALQQRKGHTL SHGLPQGHTL YPTTPPQLPP MAIGLPPQLI PNGSGVHSNG HINGSVRPWF SHHT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.