Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P03030_001 | Banana | cytosol, nucleus, plastid | 56.7 | 88.58 |
| GSMUA_Achr6P03040_001 | Banana | nucleus | 28.31 | 82.12 |
| Os02t0613400-01 | Rice | extracellular | 15.14 | 67.46 |
| KRH61744 | Soybean | cytosol | 31.74 | 65.05 |
| VIT_04s0008g05690.t01 | Wine grape | nucleus | 70.09 | 54.72 |
| KRH52412 | Soybean | nucleus | 69.18 | 54.14 |
| EES07147 | Sorghum | nucleus, plastid | 66.13 | 52.19 |
| TraesCS6A01G230500.1 | Wheat | nucleus, plastid | 64.99 | 51.54 |
| TraesCS6D01G204500.1 | Wheat | nucleus, plastid | 65.07 | 51.44 |
| Solyc06g017970.2.1 | Tomato | nucleus | 66.06 | 51.33 |
| TraesCS6B01G251400.1 | Wheat | nucleus, plastid | 64.92 | 51.32 |
| HORVU0Hr1G016000.5 | Barley | nucleus | 64.76 | 50.9 |
| Zm00001d051075_P002 | Maize | nucleus | 64.92 | 50.38 |
| CDY11532 | Canola | nucleus, plastid | 61.03 | 48.55 |
| CDY58924 | Canola | nucleus, plastid | 60.81 | 48.31 |
| Bra007802.1-P | Field mustard | nucleus, plastid | 60.96 | 48.14 |
| CDX76975 | Canola | nucleus, plastid | 59.82 | 48.01 |
| Bra034251.1-P | Field mustard | nucleus | 59.67 | 47.6 |
| AT2G25320.3 | Thale cress | nucleus, plastid | 60.5 | 47.49 |
| CDY35362 | Canola | nucleus, plastid | 59.36 | 47.36 |
| KRH61745 | Soybean | nucleus | 31.89 | 42.8 |
| VIT_11s0016g05880.t01 | Wine grape | mitochondrion | 49.32 | 42.72 |
| AT2G25330.1 | Thale cress | nucleus | 20.32 | 38.53 |
| GSMUA_Achr5P02720_001 | Banana | cytosol | 8.9 | 10.49 |
| GSMUA_Achr10P... | Banana | cytosol | 8.83 | 10.4 |
| GSMUA_Achr4P28400_001 | Banana | cytosol | 8.68 | 10.22 |
| GSMUA_Achr4P22710_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 8.75 | 9.99 |
| GSMUA_Achr11P... | Banana | nucleus | 6.54 | 7.88 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 5.86 | 7.16 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 6.09 | 5.67 |
| GSMUA_Achr6P14230_001 | Banana | cytosol | 0.91 | 5.5 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.1 | InterPro:ARM-type_fold | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | EnsemblPlantsGene:GSMUA_Achr5G23550_001 | EnsemblPlants:GSMUA_Achr5P23550_001 | EnsemblPlants:GSMUA_Achr5T23550_001 | InterPro:IPR002083 | InterPro:IPR008974 |
| UniProt:M0T130 | InterPro:MATH/TRAF_dom | PFAM:PD936484 | PFAM:PF00917 | PFscan:PS50144 | PANTHER:PTHR24007 |
| PANTHER:PTHR24007:SF6 | SUPFAM:SSF48371 | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI0002961555 | SEG:seg |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G23550_001]
Coordinates
chr5:-:25250049..25262368
Molecular Weight (calculated)
146138.0 Da
IEP (calculated)
5.119
GRAVY (calculated)
-0.379
Length
1314 amino acids
Sequence
(BLAST)
(BLAST)
0001: MQLRWSGGDT TRPCAGGRSR TSPARRRAPC GADTSRWPAT TAACWCTRAA TRRPSRATSP STSRSSTPAA PPPPPAATSG TASPVTAFPS PITSMTPSPS
0101: PATPGTASPP RRTAGASSGC RRFQIGNRDC RLIVYPRGQS QPPCHLSVFL EVTDSRNTAS DWSCFVSHRL SVVNQKMEEK SVTKESQNRY SKAAKDWGWR
0201: EFVTLTSLFD QDSGFLVQDT VIFSAEVLIL KETSIMQEFN DTEPELAMMC SASQIDAISK RGSFTWRVEN FLSFKEIMET RKIFSKFFQA GGCELRIGVY
0301: ESFDMICIYL ESDQSSGSDP DKNLWVRYRM AVVNQKNPAK TVWKESSICT KTWNNSVLQF MKVSDLMESD AGFLVRDTVV FICEILDCCP WFEFSDLEVF
0401: ASEDEQDALS TDPDELIESE DSEGISGDEE DMFRNLLSRA GFHLTYGDNP SQPQVTLREK LLIDAGAIAG FLTGLRVYLD DPAKVKRLLL PTKLSSGICG
0501: KKDSLKGDAN SPSLMNLLMG VKVLQQAIID LLLDIMVECC QTSEGRTGYD SSETSSKTSP GSNGANTPPE HSGDSEVSTE YARSPKTKWP EQSEELLGLI
0601: INSLRALDSA VPQGCPEPKR RPQTIQKIIL VLDKAPKHLQ PDLIALIPKL TDPSEHSLAA CALLDCLQKP DAEPSLRLQV FGALGQLEFG SEVWERILYQ
0701: AFELLTDSSD EPLVATMSFV FKAASQCQHL PQAVRAFRLR LKSLGTEVPQ CVLHILTKIL HTCADVAEAI INDIDSDSEL DGNCTISCGT YADGTNGVSP
0801: GGMHVGKDQV VHGCHNHADV YILVEMLSIP GLFVEVSQVF ERALIRGAIG LQSVALVLER RHSQRLNIKS TSIVDDSQNR QALLDENIDS LSVQEDDFAS
0901: VLSLGEVLSL SRDTRVQDFV RMLYAIMFKI YAEEHYRFRM LKGLVERAAN VSNSCRVVDI DMDVLVFLVR EEDGIARPVL NILREVAEVS QVDRANLWHQ
1001: ICAVEDENVR FREERQEEIA NFAHEKAALS QRLNESEATT NRLKAELKSE MEQFARERKE LTEQILDVEN QLEWLRSEKD EEIAKLSADR RGLQDRLHDA
1101: ETQLSQLKTR KRDELKRVVK EKNALAERLK SAEAARKRFD EELKRYATET VTREEVRQSL EDEVRRLTQT VGQTEGEKRE KEEQIARCEA YIDGMEARLQ
1201: TCQQYIHTLE ASLQEEMSRH APLYGAGLEA LSMNELETLA RIHEEGLRQI HAIQQMKSSS NSLVGGHSLP QVHGLYSSAP PMAVGMPPSI IPNGGGIHGN
1301: GHMNGAVGPW FSPT
0101: PATPGTASPP RRTAGASSGC RRFQIGNRDC RLIVYPRGQS QPPCHLSVFL EVTDSRNTAS DWSCFVSHRL SVVNQKMEEK SVTKESQNRY SKAAKDWGWR
0201: EFVTLTSLFD QDSGFLVQDT VIFSAEVLIL KETSIMQEFN DTEPELAMMC SASQIDAISK RGSFTWRVEN FLSFKEIMET RKIFSKFFQA GGCELRIGVY
0301: ESFDMICIYL ESDQSSGSDP DKNLWVRYRM AVVNQKNPAK TVWKESSICT KTWNNSVLQF MKVSDLMESD AGFLVRDTVV FICEILDCCP WFEFSDLEVF
0401: ASEDEQDALS TDPDELIESE DSEGISGDEE DMFRNLLSRA GFHLTYGDNP SQPQVTLREK LLIDAGAIAG FLTGLRVYLD DPAKVKRLLL PTKLSSGICG
0501: KKDSLKGDAN SPSLMNLLMG VKVLQQAIID LLLDIMVECC QTSEGRTGYD SSETSSKTSP GSNGANTPPE HSGDSEVSTE YARSPKTKWP EQSEELLGLI
0601: INSLRALDSA VPQGCPEPKR RPQTIQKIIL VLDKAPKHLQ PDLIALIPKL TDPSEHSLAA CALLDCLQKP DAEPSLRLQV FGALGQLEFG SEVWERILYQ
0701: AFELLTDSSD EPLVATMSFV FKAASQCQHL PQAVRAFRLR LKSLGTEVPQ CVLHILTKIL HTCADVAEAI INDIDSDSEL DGNCTISCGT YADGTNGVSP
0801: GGMHVGKDQV VHGCHNHADV YILVEMLSIP GLFVEVSQVF ERALIRGAIG LQSVALVLER RHSQRLNIKS TSIVDDSQNR QALLDENIDS LSVQEDDFAS
0901: VLSLGEVLSL SRDTRVQDFV RMLYAIMFKI YAEEHYRFRM LKGLVERAAN VSNSCRVVDI DMDVLVFLVR EEDGIARPVL NILREVAEVS QVDRANLWHQ
1001: ICAVEDENVR FREERQEEIA NFAHEKAALS QRLNESEATT NRLKAELKSE MEQFARERKE LTEQILDVEN QLEWLRSEKD EEIAKLSADR RGLQDRLHDA
1101: ETQLSQLKTR KRDELKRVVK EKNALAERLK SAEAARKRFD EELKRYATET VTREEVRQSL EDEVRRLTQT VGQTEGEKRE KEEQIARCEA YIDGMEARLQ
1201: TCQQYIHTLE ASLQEEMSRH APLYGAGLEA LSMNELETLA RIHEEGLRQI HAIQQMKSSS NSLVGGHSLP QVHGLYSSAP PMAVGMPPSI IPNGGGIHGN
1301: GHMNGAVGPW FSPT
0001: MKQSSSEAVS SSSSSAAADQ SHPSVSSSSS EKPLSSSSIS PAEDLQVGSS RDGSGGAQEI VAVDRPGEYS ALCRWTVESF TRVKAKALWS KYFDVGGYDC
0101: RLLVYPRGDS QALPGYISIY LQIMDPRGTT SSRWDCFASY RLSIVNLVDD SLTIHKDSWH RFSSKKKSHG WCDFTLNSSI LDPKMGFLFN NDSLLITADI
0201: LILNESVSFS RDNNNEGQSL YKENSIAGPM PDVLSGKFTW KVNNFSLFKD MIKTQKIMSP VFPAGECNLR ISVYQSVVNS QEYISMCLES KETEKTLVSD
0301: RSCWCLFRMS ALNQKPGCTH MHRDSYGRFA ADNKSGDNTS LGWNDYMKMS EFVNPEAGFL LDDMAVFSTS FHVIKEFSSF TKNGGLIGGR NGAGARKSDG
0401: HMGKFTWRIE NFTRLKDLLK KRKITGLCIK SKRFQIGNRD CRLIVYPRGQ SQPPCHLSVF LEVTDSRSSS DWSCFVSHRL SVVNQRLEEK SVTKESQNRY
0501: SKAAKDWGWR EFVTLTSLFD QDSGFLVQDT VVFSAEVLIL KETSATKEYV EADSTNSVSP TDNSVKKSSF TWKVENFLAF KEIMETRKIF SKFFQAGGCE
0601: LRIGVYESFD TICIYLESDQ SAGTDVDNNF WVKYKMGILN QKNPAKSVWK ESSICTKTWN NSVLQFMKVS DMLEADAGFL VRDTVVFVCE ILDCCPWFEF
0701: SDLEVLASDD DQDALTTDPD EIIDSEESEG ISGDEEDTFR DFLSRAGFHL TFGENPSQPQ VTLREKLLMD AGAIAGFLTG LRVYLDDPTK VKRLLLPTKI
0801: SCNDRSKLIK SDESSPSLMN LLMGVKVLQQ AIIDLLLDIM VECCQPSEEG SHSEPSLLSP KTDGCVAATS SESTRERGAA EPSQHLVDER FKSDTDATLS
0901: TSAVPSSEMN GIDLLEKALA IEPMSPPTTS AGQSSDASVQ SKTKWPEQSE ELLGLIVNSL KTLDAAVPQG CPEPRRRPHS AQKIALVLDR APKHLQPDLV
1001: SLVPKLVEHS EHPLAALALI ERLQKPEAEP ALREPVYNAL SQLECDSEVW EDILSQSFEL LSDLNEESLV AAIHFTFKTA SQCQHLPEAV NAVRERLKSL
1101: GADVSLCVLD YLSKTVHSWP GIAEMILRDI NTDDSVGANF ATLPCGPFLI GENETASEMA DLMEEHIFYA NRQFFDVYIL LEMLSISCLA EEASQTFERA
1201: VARGAIVAQA VAMVLEKQRV QSPNLNATSG DASLKHQDPV LEGEASEQPA TGGTEFRIIL NLAETLTHSR DPQVRGFVKM LYTILFKWFP DQPFRVQILR
1301: RLVDRFTSPT SSSHDLDLEL EILAILIFQE QEVARPVLAM LKKVVEHANI DRAALWHQLR ANKEELVRLK EEKKIEIQSM TKEKSSITQK LSESEAANTR
1401: LKSEMKAEAD RFSREKKDLV EQFRDVESQL EWIRSERQDE IDKLSSEKKT LLDRLHEAET QLALQKTRKR DELKKVGKEK NALTEKLKVT EAARKRFEEE
1501: LKRYATENVT REELRKSLED QIRQLTQTVG QTKEEKREKE DQIARCEAYI DGMESKLQAC QQYIHTLESS LREEISRHAP LYGANLESLS MKELDTIARI
1601: HEEGLRQIHA LQQRKGHTLS HGLPQGHTLY PTTPPQLPPM AIGLPPQLIP NGSGVHSNGH INGSVRPWFS HHT
0101: RLLVYPRGDS QALPGYISIY LQIMDPRGTT SSRWDCFASY RLSIVNLVDD SLTIHKDSWH RFSSKKKSHG WCDFTLNSSI LDPKMGFLFN NDSLLITADI
0201: LILNESVSFS RDNNNEGQSL YKENSIAGPM PDVLSGKFTW KVNNFSLFKD MIKTQKIMSP VFPAGECNLR ISVYQSVVNS QEYISMCLES KETEKTLVSD
0301: RSCWCLFRMS ALNQKPGCTH MHRDSYGRFA ADNKSGDNTS LGWNDYMKMS EFVNPEAGFL LDDMAVFSTS FHVIKEFSSF TKNGGLIGGR NGAGARKSDG
0401: HMGKFTWRIE NFTRLKDLLK KRKITGLCIK SKRFQIGNRD CRLIVYPRGQ SQPPCHLSVF LEVTDSRSSS DWSCFVSHRL SVVNQRLEEK SVTKESQNRY
0501: SKAAKDWGWR EFVTLTSLFD QDSGFLVQDT VVFSAEVLIL KETSATKEYV EADSTNSVSP TDNSVKKSSF TWKVENFLAF KEIMETRKIF SKFFQAGGCE
0601: LRIGVYESFD TICIYLESDQ SAGTDVDNNF WVKYKMGILN QKNPAKSVWK ESSICTKTWN NSVLQFMKVS DMLEADAGFL VRDTVVFVCE ILDCCPWFEF
0701: SDLEVLASDD DQDALTTDPD EIIDSEESEG ISGDEEDTFR DFLSRAGFHL TFGENPSQPQ VTLREKLLMD AGAIAGFLTG LRVYLDDPTK VKRLLLPTKI
0801: SCNDRSKLIK SDESSPSLMN LLMGVKVLQQ AIIDLLLDIM VECCQPSEEG SHSEPSLLSP KTDGCVAATS SESTRERGAA EPSQHLVDER FKSDTDATLS
0901: TSAVPSSEMN GIDLLEKALA IEPMSPPTTS AGQSSDASVQ SKTKWPEQSE ELLGLIVNSL KTLDAAVPQG CPEPRRRPHS AQKIALVLDR APKHLQPDLV
1001: SLVPKLVEHS EHPLAALALI ERLQKPEAEP ALREPVYNAL SQLECDSEVW EDILSQSFEL LSDLNEESLV AAIHFTFKTA SQCQHLPEAV NAVRERLKSL
1101: GADVSLCVLD YLSKTVHSWP GIAEMILRDI NTDDSVGANF ATLPCGPFLI GENETASEMA DLMEEHIFYA NRQFFDVYIL LEMLSISCLA EEASQTFERA
1201: VARGAIVAQA VAMVLEKQRV QSPNLNATSG DASLKHQDPV LEGEASEQPA TGGTEFRIIL NLAETLTHSR DPQVRGFVKM LYTILFKWFP DQPFRVQILR
1301: RLVDRFTSPT SSSHDLDLEL EILAILIFQE QEVARPVLAM LKKVVEHANI DRAALWHQLR ANKEELVRLK EEKKIEIQSM TKEKSSITQK LSESEAANTR
1401: LKSEMKAEAD RFSREKKDLV EQFRDVESQL EWIRSERQDE IDKLSSEKKT LLDRLHEAET QLALQKTRKR DELKKVGKEK NALTEKLKVT EAARKRFEEE
1501: LKRYATENVT REELRKSLED QIRQLTQTVG QTKEEKREKE DQIARCEAYI DGMESKLQAC QQYIHTLESS LREEISRHAP LYGANLESLS MKELDTIARI
1601: HEEGLRQIHA LQQRKGHTLS HGLPQGHTLY PTTPPQLPPM AIGLPPQLIP NGSGVHSNGH INGSVRPWFS HHT
Arabidopsis Description
TRAF-like family protein [Source:TAIR;Acc:AT2G25320]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.