Factsheet for GSMUA_Achr6P03040_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G25330.1	Thale cress	nucleus	53.64	35.06
GSMUA_Achr5P23550_001	Banana	plastid	82.12	28.31
KRH61745	Soybean	nucleus	60.26	27.89
KRH52412	Soybean	nucleus	64.46	17.39
CDX76975	Canola	nucleus, plastid	62.03	17.17
Bra034251.1-P	Field mustard	nucleus	62.25	17.12
CDY35362	Canola	nucleus, plastid	62.03	17.06
VIT_04s0008g05690.t01	Wine grape	nucleus	63.13	16.99
CDY11532	Canola	nucleus, plastid	61.59	16.89
CDY58924	Canola	nucleus, plastid	61.59	16.87
Bra007802.1-P	Field mustard	nucleus, plastid	61.59	16.77
AT2G25320.3	Thale cress	nucleus, plastid	60.93	16.49
EES07147	Sorghum	nucleus, plastid	60.04	16.34
Solyc06g017970.2.1	Tomato	nucleus	60.26	16.14
TraesCS6B01G251400.1	Wheat	nucleus, plastid	59.16	16.13
TraesCS6D01G204500.1	Wheat	nucleus, plastid	59.16	16.13
TraesCS6A01G230500.1	Wheat	nucleus, plastid	58.72	16.05
HORVU0Hr1G016000.5	Barley	nucleus	58.72	15.91
Zm00001d051075_P002	Maize	nucleus	58.94	15.77
VIT_11s0016g05880.t01	Wine grape	mitochondrion	47.02	14.04
GSMUA_Achr5P02720_001	Banana	cytosol	12.14	4.93
GSMUA_Achr4P22710_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	12.36	4.87
GSMUA_Achr4P28400_001	Banana	cytosol	11.7	4.75
GSMUA_Achr10P...	Banana	cytosol	11.26	4.57
Os02t0613400-01	Rice	extracellular	2.43	3.73
GSMUA_Achr6P14230_001	Banana	cytosol	1.77	3.67
GSMUA_Achr2P12590_001	Banana	nucleus	8.39	3.53
GSMUA_Achr5P03190_001	Banana	nucleus	9.05	2.9
GSMUA_Achr11P...	Banana	nucleus	6.4	2.66
GSMUA_Achr6P03030_001	Banana	cytosol, nucleus, plastid	4.64	2.5
KRH61744	Soybean	cytosol	3.31	2.34

Protein Annotations

EnsemblPlants:GSMUA_Achr6P03040_001	EnsemblPlants:GSMUA_Achr6T03040_001	EnsemblPlantsGene:GSMUA_Achr6G03040_001	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR24007
PANTHER:PTHR24007:SF6	PFAM:PF00917	PFscan:PS50144	SEG:seg	SUPFAM:SSF49599	UniParc:UPI000294F2F6
UniProt:M0T3Q2	MapMan:35.1	:	:	:	:

Description

Putative Whole genome shotgun sequence of line PN40024, scaffold_8.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr6G03040_001]

Coordinates

chr6:-:2085621..2089417

Molecular Weight (calculated)

50749.8 Da

IEP (calculated)

8.488

GRAVY (calculated)

-0.427

Length

453 amino acids

Sequence
(BLAST)

001: MREAADRGAR TRSRWSGAAT TRRCAGGRCP SFPVQRPAPC GAATSRWAAT TAACWCTRAA TRRPSRATSP STCRSSTPAA PHRPPAATSG TVSPATASPS
101: PTTSTTPSPS PATPGTASPP RKTVGASSGC QRFQIGNRDC RLIVYPRGQS QPPCHLSVFL EVTDSRNMAS EWSCFVSHRL SVVNQRMEEK SVTKESQNRY
201: SKAAKDWGWR EFVTLTSLFD QDSGFLVQDT VIFSAEVLIL KETSTMQEFS DTEPALVPVC PASQVDAISK RGSFTWRVEN FLSFKEIMET RKIFSKFFQV
301: GGCELRIGVY ESFDTICIYL ESDQSSGIDS DKNFWVRYRM AIVNQKNPAK TVWKESSICT KTWNNSVLQF MKVSDLLESD AGFLIRDTVV FICEIIDCCP
401: WFEFSDLEHT VFRRGEEEGR KEEQEVYWIG RRAWEWQVAI SEDMISRITR AKH

Best Arabidopsis Sequence Match ( AT2G25320.1 )
(BLAST)

0001: MKQSSSEAVS SSSSSAAADQ SHPSVSSSSS EKPLSSSSIS PAEDLQVGSS RDGSGGAQEI VAVDRPGEYS ALCRWTVESF TRVKAKALWS KYFDVGGYDC
0101: RLLVYPRGDS QALPGYISIY LQIMDPRGTT SSRWDCFASY RLSIVNLVDD SLTIHKDSWH RFSSKKKSHG WCDFTLNSSI LDPKMGFLFN NDSLLITADI
0201: LILNESVSFS RDNNNEGQSL YKENSIAGPM PDVLSGKFTW KVNNFSLFKD MIKTQKIMSP VFPAGECNLR ISVYQSVVNS QEYISMCLES KETEKTLVSD
0301: RSCWCLFRMS ALNQKPGCTH MHRDSYGRFA ADNKSGDNTS LGWNDYMKMS EFVNPEAGFL LDDMAVFSTS FHVIKEFSSF TKNGGLIGGR NGAGARKSDG
0401: HMGKFTWRIE NFTRLKDLLK KRKITGLCIK SKRFQIGNRD CRLIVYPRGQ SQPPCHLSVF LEVTDSRSSS DWSCFVSHRL SVVNQRLEEK SVTKESQNRY
0501: SKAAKDWGWR EFVTLTSLFD QDSGFLVQDT VVFSAEVLIL KETSATKEYV EADSTNSVSP TDNSVKKSSF TWKVENFLAF KEIMETRKIF SKFFQAGGCE
0601: LRIGVYESFD TICIYLESDQ SAGTDVDNNF WVKYKMGILN QKNPAKSVWK ESSICTKTWN NSVLQFMKVS DMLEADAGFL VRDTVVFVCE ILDCCPWFEF
0701: SDLEVLASDD DQDALTTDPD EIIDSEESEG ISGDEEDTFR DFLSRAGFHL TFGENPSQPQ VTLREKLLMD AGAIAGFLTG LRVYLDDPTK VKRLLLPTKI
0801: SCNDRSKLIK SDESSPSLMN LLMGVKVLQQ AIIDLLLDIM VECCQPSEEG SHSEPSLLSP KTDGCVAATS SESTRERGAA EPSQHLVDER FKSDTDATLS
0901: TSAVPSSEMN GIDLLEKALA IEPMSPPTTS AGQSSDASVQ SKTKWPEQSE ELLGLIVNSL KTLDAAVPQG CPEPRRRPHS AQKIALVLDR APKHLQPDLV
1001: SLVPKLVEHS EHPLAALALI ERLQKPEAEP ALREPVYNAL SQLECDSEVW EDILSQSFEL LSDLNEESLV AAIHFTFKTA SQCQHLPEAV NAVRERLKSL
1101: GADVSLCVLD YLSKTVHSWP GIAEMILRDI NTDDSVGANF ATLPCGPFLI GENETASEMA DLMEEHIFYA NRQFFDVYIL LEMLSISCLA EEASQTFERA
1201: VARGAIVAQA VAMVLEKQRV QSPNLNATSG DASLKHQDPV LEGEASEQPA TGGTEFRIIL NLAETLTHSR DPQVRGFVKM LYTILFKWFP DQPFRVQILR
1301: RLVDRFTSPT SSSHDLDLEL EILAILIFQE QEVARPVLAM LKKVVEHANI DRAALWHQLR ANKEELVRLK EEKKIEIQSM TKEKSSITQK LSESEAANTR
1401: LKSEMKAEAD RFSREKKDLV EQFRDVESQL EWIRSERQDE IDKLSSEKKT LLDRLHEAET QLALQKTRKR DELKKVGKEK NALTEKLKVT EAARKRFEEE
1501: LKRYATENVT REELRKSLED QIRQLTQTVG QTKEEKREKE DQIARCEAYI DGMESKLQAC QQYIHTLESS LREEISRHAP LYGANLESLS MKELDTIARI
1601: HEEGLRQIHA LQQRKGHTLS HGLPQGHTLY PTTPPQLPPM AIGLPPQLIP NGSGVHSNGH INGSVRPWFS HHT

Arabidopsis Description

TRAF-like family protein [Source:TAIR;Acc:AT2G25320]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.