Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G204500.1 | Wheat | nucleus, plastid | 99.46 | 99.16 |
| TraesCS6B01G251400.1 | Wheat | nucleus, plastid | 98.73 | 98.44 |
| HORVU0Hr1G016000.5 | Barley | nucleus | 96.56 | 95.69 |
| EES07147 | Sorghum | nucleus, plastid | 82.26 | 81.86 |
| Zm00001d051075_P002 | Maize | nucleus | 81.23 | 79.5 |
| Os02t0613400-01 | Rice | extracellular | 13.82 | 77.63 |
| GSMUA_Achr6P03030_001 | Banana | cytosol, nucleus, plastid | 33.07 | 65.16 |
| GSMUA_Achr5P23550_001 | Banana | plastid | 51.54 | 64.99 |
| VIT_04s0008g05690.t01 | Wine grape | nucleus | 62.28 | 61.32 |
| KRH52412 | Soybean | nucleus | 61.5 | 60.69 |
| KRH61745 | Soybean | nucleus | 35.43 | 59.96 |
| AT2G25330.1 | Thale cress | nucleus | 24.98 | 59.74 |
| GSMUA_Achr6P03040_001 | Banana | nucleus | 16.05 | 58.72 |
| Solyc06g017970.2.1 | Tomato | nucleus | 59.14 | 57.95 |
| KRH61744 | Soybean | cytosol | 21.85 | 56.47 |
| AT2G25320.3 | Thale cress | nucleus, plastid | 56.67 | 56.09 |
| CDY11532 | Canola | nucleus, plastid | 55.82 | 55.99 |
| CDY58924 | Canola | nucleus, plastid | 55.88 | 55.99 |
| CDX76975 | Canola | nucleus, plastid | 55.22 | 55.89 |
| Bra007802.1-P | Field mustard | nucleus, plastid | 56.13 | 55.89 |
| Bra034251.1-P | Field mustard | nucleus | 55.16 | 55.49 |
| CDY35362 | Canola | nucleus, plastid | 54.86 | 55.19 |
| VIT_11s0016g05880.t01 | Wine grape | mitochondrion | 46.11 | 50.36 |
| TraesCS4A01G163000.1 | Wheat | cytosol | 10.8 | 16.03 |
| TraesCS5A01G105900.1 | Wheat | cytosol | 10.74 | 15.91 |
| TraesCS2A01G246800.3 | Wheat | golgi | 10.26 | 15.19 |
| TraesCS3A01G295900.7 | Wheat | cytosol | 9.35 | 14.04 |
| TraesCS4A01G038800.2 | Wheat | mitochondrion, nucleus | 6.82 | 10.52 |
| TraesCS5A01G060400.1 | Wheat | nucleus | 6.58 | 9.71 |
| TraesCS3A01G321300.2 | Wheat | nucleus | 7.42 | 9.35 |
| TraesCS3A01G176700.1 | Wheat | cytosol | 1.03 | 8.72 |
| TraesCS1A01G325900.1 | Wheat | nucleus | 7.18 | 8.57 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G230500.1 | EnsemblPlantsGene:TraesCS6A01G230500 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil | PANTHER:PTHR24007 |
| PANTHER:PTHR24007:SF6 | PFAM:PD936484 | PFAM:PF00917 | PFscan:PS50144 | SEG:seg | SMART:SM00061 |
| SUPFAM:SSF49599 | TIGR:cd00121 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr6A:+:435057034..435066311
Molecular Weight (calculated)
183985.0 Da
IEP (calculated)
5.385
GRAVY (calculated)
-0.380
Length
1657 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKPTTVSPPA AAPATDDPSP SHSDPASATF SVERRGDASA SCRWTLPDFP RTRARTFYSR YFEVGGFDCR LLLYPRGDTQ SLPGYLSLYL QVLDPKTPSS
0101: SSSTTTTTTS SKWDCFLSYR LSVVHPSDNS KSLARDSWHR FSSKKRSHGW CDFAPSAAAS FLLPPHDSLV IAADISVLSE TASFSEADGR FTWKVFNFSL
0201: FREMIRTQKI MSPAFFPAAA AAGGSDCGLR ISVYQSNVSG AEHLSVCLEG KEPVVQATSA SSASALAATS AGSGVPDADR GCWCLFRVSI LNQKPGGSHI
0301: HRDSYGRFGA DSASLGWGDY LKMDEFLAAD GGYLFDGAVV FNASVHVIKE SNSFTRSLPP VAGISGAGGG RSGTRKSDGH FGKFVWRIEN FTRLKELLKK
0401: RKITGLCIKS RRFQVGNRDC RLIVYPRGQS QPPCHLSVFL EVTDPRNTTS EWTCFVSHRL SVINQKGEEK SIMKESQNRY SKSAKDWGWR EFLTLTSLFD
0501: QDAGFLVQDT VVFSAEVLIL KETATMQGLS DEDSEICSSS SGYQIDTLPK HPSFTWKVEN FLSFKEIMET RKIFSKYFQA GGCELRIGVY ESFDTMCIYL
0601: ESDQSSGVDP DKNFWVHYKM AILNQKNSLK TVCKESSICT KTWNNSVLQF MKVSDILDPE AGFLVRDTIV FVCEIIDCCP WFDFSDLEVF ASDDDQDELS
0701: TDPDELIESE DSDDMSGDEE DMFRNLLSRA GFSLTYGDNY TQPQVTLREK ILTDASAIAG FLTGLRVYLD NPAKVKRMLL PAKVSTKGGG KKDSSKCDSS
0801: STSLINLLMG VSVLKQAIID LLLDIMVECC QPSDERSSYG SSSSSSKTAP DSNGASSPSE LIVEGEQTEC ACRNQYETAE SDTVNFGRNL GLENAELNAN
0901: EMPVKILEQS SCPPETPAID LPGDESSDQA SGTKWPDQSE ELLGLIVNSL KALDCAVPHG CPEPRKRPKS VQKIALVLEK APKKLQPDFI ALVPKLVDGS
1001: EHSLASCALL DHLEKADAEP SLRLPVFGAL SELEFDADVW KRVSFHALEL LSDSNDEPLV AAISYVLKAA SQCQHIPQAV RAVRWRLKRL GADVPPCVLE
1101: FLSKTVHNWP DVAEALLKDI DSEPEPDNSC LSTPSSTCSK DGLSAEGMPS WQEQAVHGSN HLSDVFVLIE MLSVPGLFVE VARGFERALL QGAFGLQLVA
1201: MVLERRHSHK LSSKSGAVVY DLQSKQVLLD GQFEPSPIQE GDFTSVLALG EVLSLSTSAR VQDFVRMLYA IMFKIYAEDH YRCRFLKGLV DRATNTSDNC
1301: REVDIDMDVL VFLVKEEFGI ARPVLNMMRE AAEVAQADRA NLWHQICATE DENIRLREEM DMEQTKFTNE KAALAQRLTE SEATTGHLRS ELKAEKDRYI
1401: REKKELSRQM REIENQMEWV RSEKDEQIAK LSADRKNLHD RVSEAETQLS QFKARKREEI KKVTTEKNTL AERLKNAEAS RKRFDDELKR HAAETQAREE
1501: IRKSLEAEVR RLTHKVGQTE GEKKEKEDQI SRCEAYIDGM ESKLQVCQQY IRTLETSLQE EMARHAPLYG VGVEALSLEE LETLANIHEQ SLRQIHTIRQ
1601: RKGSSHLLSV PGLFPSSSMA VGPPSSLIHT SSIAPNGVGT HGNGHMNNAV DRWFNQT
0101: SSSTTTTTTS SKWDCFLSYR LSVVHPSDNS KSLARDSWHR FSSKKRSHGW CDFAPSAAAS FLLPPHDSLV IAADISVLSE TASFSEADGR FTWKVFNFSL
0201: FREMIRTQKI MSPAFFPAAA AAGGSDCGLR ISVYQSNVSG AEHLSVCLEG KEPVVQATSA SSASALAATS AGSGVPDADR GCWCLFRVSI LNQKPGGSHI
0301: HRDSYGRFGA DSASLGWGDY LKMDEFLAAD GGYLFDGAVV FNASVHVIKE SNSFTRSLPP VAGISGAGGG RSGTRKSDGH FGKFVWRIEN FTRLKELLKK
0401: RKITGLCIKS RRFQVGNRDC RLIVYPRGQS QPPCHLSVFL EVTDPRNTTS EWTCFVSHRL SVINQKGEEK SIMKESQNRY SKSAKDWGWR EFLTLTSLFD
0501: QDAGFLVQDT VVFSAEVLIL KETATMQGLS DEDSEICSSS SGYQIDTLPK HPSFTWKVEN FLSFKEIMET RKIFSKYFQA GGCELRIGVY ESFDTMCIYL
0601: ESDQSSGVDP DKNFWVHYKM AILNQKNSLK TVCKESSICT KTWNNSVLQF MKVSDILDPE AGFLVRDTIV FVCEIIDCCP WFDFSDLEVF ASDDDQDELS
0701: TDPDELIESE DSDDMSGDEE DMFRNLLSRA GFSLTYGDNY TQPQVTLREK ILTDASAIAG FLTGLRVYLD NPAKVKRMLL PAKVSTKGGG KKDSSKCDSS
0801: STSLINLLMG VSVLKQAIID LLLDIMVECC QPSDERSSYG SSSSSSKTAP DSNGASSPSE LIVEGEQTEC ACRNQYETAE SDTVNFGRNL GLENAELNAN
0901: EMPVKILEQS SCPPETPAID LPGDESSDQA SGTKWPDQSE ELLGLIVNSL KALDCAVPHG CPEPRKRPKS VQKIALVLEK APKKLQPDFI ALVPKLVDGS
1001: EHSLASCALL DHLEKADAEP SLRLPVFGAL SELEFDADVW KRVSFHALEL LSDSNDEPLV AAISYVLKAA SQCQHIPQAV RAVRWRLKRL GADVPPCVLE
1101: FLSKTVHNWP DVAEALLKDI DSEPEPDNSC LSTPSSTCSK DGLSAEGMPS WQEQAVHGSN HLSDVFVLIE MLSVPGLFVE VARGFERALL QGAFGLQLVA
1201: MVLERRHSHK LSSKSGAVVY DLQSKQVLLD GQFEPSPIQE GDFTSVLALG EVLSLSTSAR VQDFVRMLYA IMFKIYAEDH YRCRFLKGLV DRATNTSDNC
1301: REVDIDMDVL VFLVKEEFGI ARPVLNMMRE AAEVAQADRA NLWHQICATE DENIRLREEM DMEQTKFTNE KAALAQRLTE SEATTGHLRS ELKAEKDRYI
1401: REKKELSRQM REIENQMEWV RSEKDEQIAK LSADRKNLHD RVSEAETQLS QFKARKREEI KKVTTEKNTL AERLKNAEAS RKRFDDELKR HAAETQAREE
1501: IRKSLEAEVR RLTHKVGQTE GEKKEKEDQI SRCEAYIDGM ESKLQVCQQY IRTLETSLQE EMARHAPLYG VGVEALSLEE LETLANIHEQ SLRQIHTIRQ
1601: RKGSSHLLSV PGLFPSSSMA VGPPSSLIHT SSIAPNGVGT HGNGHMNNAV DRWFNQT
0001: MMKQSSSEAV SSSSSSAAAD QSHPSVSSSS SEKPLSSSSI SPAEDLQVGS SRDGSGGAQE IVAVDRPGEY SALCRWTVES FTRVKAKALW SKYFDVGGYD
0101: CRLLVYPRGD SQALPGYISI YLQIMDPRGT TSSRWDCFAS YRLSIVNLVD DSLTIHKDSW HRFSSKKKSH GWCDFTLNSS ILDPKMGFLF NNDSLLITAD
0201: ILILNESVSF SRDNNNEGQS LYKENSIAGP MPDVLSGKFT WKVNNFSLFK DMIKTQKIMS PVFPAGECNL RISVYQSVVN SQEYISMCLE SKETEKTLVS
0301: DRSCWCLFRM SALNQKPGCT HMHRDSYGRF AADNKSGDNT SLGWNDYMKM SEFVNPEAGF LLDDMAVFST SFHVIKEFSS FTKNGGLIGG RNGAGARKSD
0401: GHMGKFTWRI ENFTRLKDLL KKRKITGLCI KSKRFQIGNR DCRLIVYPRG QSQPPCHLSV FLEVTDSRSS SDWSCFVSHR LSVVNQRLEE KSVTKESQNR
0501: YSKAAKDWGW REFVTLTSLF DQDSGFLVQD TVVFSAEVLI LKETSATKEY VEADSTNSVS PTDNSVKKSS FTWKVENFLA FKEIMETRKI FSKFFQAGGC
0601: ELRIGVYESF DTICIYLESD QSAGTDVDNN FWVKYKMGIL NQKNPAKSVW KESSICTKTW NNSVLQFMKV SDMLEADAGF LVRDTVVFVC EILDCCPWFE
0701: FSDLEVLASD DDQDALTTDP DEIIDSEESE GISGDEEDTF RDFLSRAGFH LTFGENPSQP QVTLREKLLM DAGAIAGFLT GLRVYLDDPT KVKRLLLPTK
0801: ISCNDRSKLI KSDESSPSLM NLLMGVKVLQ QAIIDLLLDI MVECCQPSEE GSHSEPSLLS PKTDGCVAAT SSESTRERGA AEPSQHLVDE RFKSDTDATL
0901: STSAVPSSEM NGIDLLEKAL AIEPMSPPTT SAGQSSDASV QSKTKWPEQS EELLGLIVNS LKTLDAAVPQ GCPEPRRRPH SAQKIALVLD RAPKHLQPDL
1001: VSLVPKLVEH SEHPLAALAL IERLQKPEAE PALREPVYNA LSQLECDSEV WEDILSQSFE LLSDLNEESL VAAIHFTFKT ASQCQHLPEA VNAVRERLKS
1101: LGADVSLCVL DYLSKTVHSW PGIAEMILRD INTDDSVGAN FATLPCGPFL IGENETASEM ADLMEEHIFY ANRQFFDVYI LLEMLSISCL AEEASQTFER
1201: AVARGAIVAQ AVAMVLEKQR VQSPNLNATS GDASLKHQDP VLEGEASEQP ATGGTEFRII LNLAETLTHS RDPQVRGFVK MLYTILFKWF PDQPFRVQIL
1301: RRLVDRFTSP TSSSHDLDLE LEILAILIFQ EQEVARPVLA MLKKVVEHAN IDRAALWHQL RANKEELVRL KEEKKIEIQS MTKEKSSITQ KLSESEAANT
1401: RLKSEMKAEA DRFSREKKDL VEQFRDVESQ LEWIRSERQD EIDKLSSEKK TLLDRLHEAE TQLALQKTRK RDELKKVGKE KNALTEKLKV TEAARKRFEE
1501: ELKRYATENV TREELRKSLE DQIRQLTQTV GQTKEEKREK EDQIARCEAY IDGMESKLQA CQQYIHTLES SLREEISRHA PLYGANLESL SMKELDTIAR
1601: IHEEGLRQIH ALQQRKGHTL SHGLPQGHTL YPTTPPQLPP MAIGLPPQLI PNGSGVHSNG HINGSVRPWF SHHT
0101: CRLLVYPRGD SQALPGYISI YLQIMDPRGT TSSRWDCFAS YRLSIVNLVD DSLTIHKDSW HRFSSKKKSH GWCDFTLNSS ILDPKMGFLF NNDSLLITAD
0201: ILILNESVSF SRDNNNEGQS LYKENSIAGP MPDVLSGKFT WKVNNFSLFK DMIKTQKIMS PVFPAGECNL RISVYQSVVN SQEYISMCLE SKETEKTLVS
0301: DRSCWCLFRM SALNQKPGCT HMHRDSYGRF AADNKSGDNT SLGWNDYMKM SEFVNPEAGF LLDDMAVFST SFHVIKEFSS FTKNGGLIGG RNGAGARKSD
0401: GHMGKFTWRI ENFTRLKDLL KKRKITGLCI KSKRFQIGNR DCRLIVYPRG QSQPPCHLSV FLEVTDSRSS SDWSCFVSHR LSVVNQRLEE KSVTKESQNR
0501: YSKAAKDWGW REFVTLTSLF DQDSGFLVQD TVVFSAEVLI LKETSATKEY VEADSTNSVS PTDNSVKKSS FTWKVENFLA FKEIMETRKI FSKFFQAGGC
0601: ELRIGVYESF DTICIYLESD QSAGTDVDNN FWVKYKMGIL NQKNPAKSVW KESSICTKTW NNSVLQFMKV SDMLEADAGF LVRDTVVFVC EILDCCPWFE
0701: FSDLEVLASD DDQDALTTDP DEIIDSEESE GISGDEEDTF RDFLSRAGFH LTFGENPSQP QVTLREKLLM DAGAIAGFLT GLRVYLDDPT KVKRLLLPTK
0801: ISCNDRSKLI KSDESSPSLM NLLMGVKVLQ QAIIDLLLDI MVECCQPSEE GSHSEPSLLS PKTDGCVAAT SSESTRERGA AEPSQHLVDE RFKSDTDATL
0901: STSAVPSSEM NGIDLLEKAL AIEPMSPPTT SAGQSSDASV QSKTKWPEQS EELLGLIVNS LKTLDAAVPQ GCPEPRRRPH SAQKIALVLD RAPKHLQPDL
1001: VSLVPKLVEH SEHPLAALAL IERLQKPEAE PALREPVYNA LSQLECDSEV WEDILSQSFE LLSDLNEESL VAAIHFTFKT ASQCQHLPEA VNAVRERLKS
1101: LGADVSLCVL DYLSKTVHSW PGIAEMILRD INTDDSVGAN FATLPCGPFL IGENETASEM ADLMEEHIFY ANRQFFDVYI LLEMLSISCL AEEASQTFER
1201: AVARGAIVAQ AVAMVLEKQR VQSPNLNATS GDASLKHQDP VLEGEASEQP ATGGTEFRII LNLAETLTHS RDPQVRGFVK MLYTILFKWF PDQPFRVQIL
1301: RRLVDRFTSP TSSSHDLDLE LEILAILIFQ EQEVARPVLA MLKKVVEHAN IDRAALWHQL RANKEELVRL KEEKKIEIQS MTKEKSSITQ KLSESEAANT
1401: RLKSEMKAEA DRFSREKKDL VEQFRDVESQ LEWIRSERQD EIDKLSSEKK TLLDRLHEAE TQLALQKTRK RDELKKVGKE KNALTEKLKV TEAARKRFEE
1501: ELKRYATENV TREELRKSLE DQIRQLTQTV GQTKEEKREK EDQIARCEAY IDGMESKLQA CQQYIHTLES SLREEISRHA PLYGANLESL SMKELDTIAR
1601: IHEEGLRQIH ALQQRKGHTL SHGLPQGHTL YPTTPPQLPP MAIGLPPQLI PNGSGVHSNG HINGSVRPWF SHHT
Arabidopsis Description
TRAF-like family protein [Source:TAIR;Acc:AT2G25320]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.