Factsheet for AT2G25330.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P03040_001	Banana	nucleus	35.06	53.64
KRH61745	Soybean	nucleus	74.75	52.91
AT2G25320.3	Thale cress	nucleus, plastid	85.71	35.48
CDY11532	Canola	nucleus, plastid	84.56	35.47
CDX76975	Canola	nucleus, plastid	83.41	35.31
CDY58924	Canola	nucleus, plastid	84.13	35.25
Bra007802.1-P	Field mustard	nucleus, plastid	84.56	35.22
CDY35362	Canola	nucleus, plastid	81.82	34.43
Bra034251.1-P	Field mustard	nucleus	81.67	34.37
KRH52412	Soybean	nucleus	74.89	30.91
VIT_04s0008g05690.t01	Wine grape	nucleus	74.46	30.66
Solyc06g017970.2.1	Tomato	nucleus	72.73	29.8
TraesCS6B01G251400.1	Wheat	nucleus, plastid	60.03	25.03
TraesCS6A01G230500.1	Wheat	nucleus, plastid	59.74	24.98
TraesCS6D01G204500.1	Wheat	nucleus, plastid	59.74	24.91
EES07147	Sorghum	nucleus, plastid	59.6	24.8
HORVU0Hr1G016000.5	Barley	nucleus	59.02	24.46
Zm00001d051075_P002	Maize	nucleus	59.31	24.28
GSMUA_Achr5P23550_001	Banana	plastid	38.53	20.32
AT5G52330.3	Thale cress	cytosol	7.36	12.85
AT5G06600.1	Thale cress	cytosol	16.59	10.3
AT4G16045.1	Thale cress	cytosol	5.63	10.21
AT3G11910.1	Thale cress	cytosol	16.02	9.96
AT1G04300.3	Thale cress	nucleus	10.39	6.65
AT5G43560.1	Thale cress	nucleus	9.81	6.45
AT3G49600.1	Thale cress	cytosol	7.79	5.06
GSMUA_Achr6P03030_001	Banana	cytosol, nucleus, plastid	0.14	0.12
KRH61744	Soybean	cytosol	0.0	0.0
Os02t0613400-01	Rice	extracellular	0.0	0.0

Protein Annotations

Gene3D:2.60.210.10	MapMan:35.1	EntrezGene:817071	ProteinID:AAD23658.1	ProteinID:AEC07689.1	ArrayExpress:AT2G25330
EnsemblPlantsGene:AT2G25330	RefSeq:AT2G25330	TAIR:AT2G25330	RefSeq:AT2G25330-TAIR-G	EnsemblPlants:AT2G25330.1	TAIR:AT2G25330.1
Unigene:At.39034	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974
InterPro:MATH/TRAF_dom	RefSeq:NP_180105.1	PFAM:PF00917	PFscan:PS50144	PANTHER:PTHR24007	PANTHER:PTHR24007:SF6
UniProt:Q9SIR0	SMART:SM00061	SUPFAM:SSF49599	InterPro:TRAF-like	UniParc:UPI000009F0B5	SEG:seg

Description

TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:Q9SIR0]

Coordinates

chr2:-:10788946..10791331

Molecular Weight (calculated)

78072.7 Da

IEP (calculated)

4.895

GRAVY (calculated)

-0.296

Length

693 amino acids

Sequence
(BLAST)

001: MLSSSSSAAD QSHPSISSEK PLSSSRDESG GAQEIVAVDR PGEYTALCRW TVESFTRVKA KALWSKYFDV GGYDCRLLVY PRGDSQALPG SISIYLQIID
101: PRGTSSSLWD CFASYQLSII NHVDDSLTIR KNSWHRFSNK KRSHGWCDFT LNSSVLDPKM GFLFNNDSLL ITADIMILNE SVSFSIDNNN ESVVGSMTDV
201: LSGTFTWTVE NFSMFKEMIK TQKITSPVFV AGECFLRIGV YQSVVNAQEY FSMCLDSTDT EKSVLSDKSS WCLFSMSALN QKHGCTNMNK ESYGRFAADN
301: KSGDNTGLGW NDYMKMSDFV NPDAGYLLDD KAVFSTSFDV IKEFSSFTKN GTGNGYMGKF SWRIENFTSL VDLLEKRKIT GLYIKSKRFQ IGNRDCRLIV
401: YPRGQSQPPS HLSIFLEVTD SRSSSSDWSC FVSHRLSVVN QRSEEKSVTK ESQNRFSKAE KDWGWREFVT LTSLFDQDSG FLVQDSVVFS VEVLMLKETS
501: LTKDYTEAES ASSVSQIDKT VKSSFTWKVE NFLAFKGIME KRKIFSKFFQ AGGCELRIGV YESFDTICIY LESGQSAGND VDNNLWVKYK MGILNQKNPA
601: KSVWKESSLC TKTWNNSVLL FMKVSDMLEA DAGFLVRDTL VFVCEILDCC PWFEFSDLEV LASDDVQDAL TTNPDEVIGS EKSEEDTFRQ VSP

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.