Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01264 | Canola | cytosol | 21.2 | 39.51 |
| CDY01258 | Canola | cytosol | 21.2 | 39.51 |
| CDY26906 | Canola | cytosol | 22.51 | 39.09 |
| Bra010174.1-P | Field mustard | cytosol | 22.51 | 39.09 |
| AT5G52330.3 | Thale cress | cytosol | 40.58 | 39.04 |
| Bra023279.1-P | Field mustard | cytosol | 35.34 | 38.68 |
| CDX73257 | Canola | cytosol | 41.1 | 38.67 |
| CDX93823 | Canola | cytosol | 39.01 | 38.5 |
| OQU79503 | Sorghum | nucleus | 36.39 | 30.68 |
| Os05t0508700-01 | Rice | nucleus | 42.15 | 20.88 |
| AT5G43560.1 | Thale cress | nucleus | 45.55 | 16.49 |
| AT1G04300.3 | Thale cress | nucleus | 43.72 | 15.43 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 41.36 | 14.68 |
| TraesCS5B01G071600.1 | Wheat | nucleus | 40.31 | 13.73 |
| TraesCS5D01G072000.1 | Wheat | nucleus | 40.31 | 13.71 |
| TraesCS5A01G060400.1 | Wheat | nucleus | 40.31 | 13.71 |
| HORVU5Hr1G016190.3 | Barley | nucleus | 40.05 | 13.62 |
| EES16279 | Sorghum | nucleus | 39.01 | 13.28 |
| EES01550 | Sorghum | nucleus | 41.1 | 12.98 |
| KXG22306 | Sorghum | nucleus | 42.15 | 12.5 |
| TraesCS3D01G310000.1 | Wheat | nucleus | 41.1 | 12.21 |
| TraesCS3A01G321300.2 | Wheat | nucleus | 41.36 | 12.02 |
| TraesCS3B01G343300.2 | Wheat | nucleus | 41.36 | 11.98 |
| Os01t0775300-01 | Rice | cytosol, mitochondrion, nucleus | 40.58 | 11.9 |
| TraesCS1B01G339200.1 | Wheat | nucleus | 42.41 | 11.69 |
| TraesCS1A01G325900.1 | Wheat | nucleus | 42.41 | 11.67 |
| TraesCS1D01G327700.1 | Wheat | nucleus | 42.41 | 11.67 |
| HORVU3Hr1G075800.5 | Barley | cytosol, nucleus, plastid | 41.62 | 11.62 |
| HORVU1Hr1G078170.6 | Barley | cytosol | 41.88 | 11.13 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 40.05 | 10.84 |
| AT3G11910.1 | Thale cress | cytosol | 19.9 | 6.82 |
| AT5G06600.1 | Thale cress | cytosol | 19.63 | 6.72 |
| AT2G25330.1 | Thale cress | nucleus | 10.21 | 5.63 |
| AT2G25320.3 | Thale cress | nucleus, plastid | 11.52 | 2.63 |
| AT3G49600.1 | Thale cress | cytosol | 6.02 | 2.16 |
| Zm00001d034390_P001 | Maize | nucleus | 0.52 | 0.78 |
| Os12t0597200-01 | Rice | cytosol, nucleus, plastid | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.1 | EntrezGene:827289 | ProteinID:AEE83685.1 | ArrayExpress:AT4G16045 | EnsemblPlantsGene:AT4G16045 |
| RefSeq:AT4G16045 | TAIR:AT4G16045 | RefSeq:AT4G16045-TAIR-G | EnsemblPlants:AT4G16045.1 | TAIR:AT4G16045.1 | Unigene:At.54348 |
| ncoils:Coil | UniProt:F4JKZ7 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002083 |
| InterPro:IPR008974 | InterPro:MATH/TRAF_dom | RefSeq:NP_680705.1 | PFAM:PF00917 | PFscan:PS50144 | PANTHER:PTHR45001 |
| SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI0000162A70 | SEG:seg | : | : |
Description
TRAF-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JKZ7]
Coordinates
chr4:+:9089906..9091860
Molecular Weight (calculated)
44314.0 Da
IEP (calculated)
5.205
GRAVY (calculated)
-0.580
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEITNNETS GEGTLTNNVN DCGVDVSNCL SLFLCVANYE KLLPGWSHLA QFSVAVENKD PKKSKIADTL HQFWKKEHDW GWKKFIELPK LQDGFIDKFD
101: SLSLKAQVQE GTSYGLFGKS GENVHELCGR EKKQAYEGDR RQKEMEELMC LWLGMDHNAR LEISSEKMDV ILKQVVKHFF VKNEVTSTLL MDFLFYRLKS
201: LEEKRRRLET LVRVVAKEVI NSNQSESAMK NLEEETKKER TNDDKEFALK INEDETKNER TIDAMEFEAS IAYVVNDMLG VTDPLLRLER FVLAPLPEMG
301: SPKLLQVSNL RIQHNMEPDE KQLADYGRWA LEVFVLDHIF CNKIEFTYEE TIALKRQEEL IHEEEAEKNT KLKKTFVGKK VN
101: SLSLKAQVQE GTSYGLFGKS GENVHELCGR EKKQAYEGDR RQKEMEELMC LWLGMDHNAR LEISSEKMDV ILKQVVKHFF VKNEVTSTLL MDFLFYRLKS
201: LEEKRRRLET LVRVVAKEVI NSNQSESAMK NLEEETKKER TNDDKEFALK INEDETKNER TIDAMEFEAS IAYVVNDMLG VTDPLLRLER FVLAPLPEMG
301: SPKLLQVSNL RIQHNMEPDE KQLADYGRWA LEVFVLDHIF CNKIEFTYEE TIALKRQEEL IHEEEAEKNT KLKKTFVGKK VN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.