Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023279.1-P | Field mustard | cytosol | 88.11 | 97.71 |
| CDY01258 | Canola | cytosol | 49.87 | 94.15 |
| CDY01264 | Canola | cytosol | 49.1 | 92.68 |
| CDY26906 | Canola | cytosol | 39.79 | 70.0 |
| CDX73257 | Canola | cytosol | 69.25 | 66.01 |
| OQU79503 | Sorghum | nucleus | 46.51 | 39.74 |
| AT4G16045.1 | Thale cress | cytosol | 38.5 | 39.01 |
| Os05t0508700-01 | Rice | nucleus | 48.32 | 24.25 |
| CDY68000 | Canola | nucleus | 5.68 | 20.75 |
| CDY32539 | Canola | nucleus | 53.23 | 20.48 |
| CDY10066 | Canola | nucleus | 53.23 | 20.32 |
| CDX86642 | Canola | nucleus | 54.78 | 20.29 |
| CDY18218 | Canola | nucleus | 55.3 | 20.23 |
| CDX89828 | Canola | nucleus | 55.04 | 20.08 |
| CDY22344 | Canola | nucleus | 43.15 | 18.02 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 48.58 | 17.47 |
| CDX94711 | Canola | nucleus | 43.15 | 17.34 |
| TraesCS5B01G071600.1 | Wheat | nucleus | 49.1 | 16.93 |
| TraesCS5A01G060400.1 | Wheat | nucleus | 49.1 | 16.92 |
| HORVU5Hr1G016190.3 | Barley | nucleus | 49.1 | 16.92 |
| TraesCS5D01G072000.1 | Wheat | nucleus | 49.1 | 16.92 |
| EES16279 | Sorghum | nucleus | 48.58 | 16.76 |
| EES01550 | Sorghum | nucleus | 46.51 | 14.88 |
| Os01t0775300-01 | Rice | cytosol, mitochondrion, nucleus | 49.1 | 14.58 |
| TraesCS3D01G310000.1 | Wheat | nucleus | 47.03 | 14.15 |
| KXG22306 | Sorghum | nucleus | 46.51 | 13.98 |
| TraesCS3B01G343300.2 | Wheat | nucleus | 47.29 | 13.87 |
| TraesCS3A01G321300.2 | Wheat | nucleus | 47.03 | 13.84 |
| TraesCS1B01G339200.1 | Wheat | nucleus | 48.58 | 13.56 |
| TraesCS1A01G325900.1 | Wheat | nucleus | 48.32 | 13.47 |
| HORVU3Hr1G075800.5 | Barley | cytosol, nucleus, plastid | 47.55 | 13.45 |
| TraesCS1D01G327700.1 | Wheat | nucleus | 48.06 | 13.4 |
| HORVU1Hr1G078170.6 | Barley | cytosol | 48.58 | 13.07 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 47.03 | 12.89 |
| CDY72484 | Canola | cytosol | 5.43 | 12.8 |
| CDX72290 | Canola | cytosol, mitochondrion, plastid | 5.68 | 12.09 |
| CDY04994 | Canola | cytosol | 20.93 | 7.26 |
| CDY14077 | Canola | cytosol | 20.93 | 7.26 |
| CDY55765 | Canola | cytosol | 20.41 | 7.09 |
| CDX70087 | Canola | cytosol | 20.41 | 7.08 |
| CDX81009 | Canola | cytosol | 20.41 | 7.07 |
| CDX98939 | Canola | cytosol | 19.9 | 6.9 |
| CDY53923 | Canola | cytosol | 19.38 | 6.75 |
| CDX73847 | Canola | cytosol | 18.35 | 6.47 |
| CDY01069 | Canola | cytosol | 18.6 | 6.46 |
| CDY11532 | Canola | nucleus, plastid | 13.95 | 3.27 |
| CDY58924 | Canola | nucleus, plastid | 13.95 | 3.26 |
| CDY35362 | Canola | nucleus, plastid | 13.7 | 3.22 |
| CDY08485 | Canola | cytosol | 6.72 | 3.14 |
| CDX76975 | Canola | nucleus, plastid | 13.18 | 3.12 |
| CDY00212 | Canola | cytosol | 7.24 | 2.73 |
| CDY05943 | Canola | cytosol | 6.72 | 2.5 |
| CDY08151 | Canola | cytosol | 6.72 | 2.5 |
| CDX86966 | Canola | cytosol | 1.29 | 0.68 |
| Zm00001d034390_P001 | Maize | nucleus | 0.0 | 0.0 |
| Os12t0597200-01 | Rice | cytosol, nucleus, plastid | 0.0 | 0.0 |
| CDY67533 | Canola | cytosol, nucleus | 0.0 | 0.0 |
| CDY47909 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX93823 | EnsemblPlantsGene:GSBRNA2T00156602001 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil | PANTHER:PTHR45001 |
| PFAM:PF00917 | PFscan:PS50144 | ProteinID:CDX93823 | ProteinID:CDX93823.1 | SMART:SM00061 | SUPFAM:SSF49599 |
| UniParc:UPI0004EEE3B9 | MapMan:22.5.1.6 | : | : | : | : |
Description
BnaA09g24230D
Coordinates
chrLK031877:+:1271731..1273784
Molecular Weight (calculated)
45292.9 Da
IEP (calculated)
7.128
GRAVY (calculated)
-0.385
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEITKEDSE ICKKEIRSNV FEIGGHQWYI VFYPQGCEIC NHLSVFLCAA NHQKLLPGWN HFALFTVSLM NNHPNKSKHS DTLHKFYKRE HDWGWKKFIE
101: LPRLLDGFID DSGSLIIKAQ VQVIRKSVNG PFPCLDSQYR KELLRVYFTV VKQIFLRFMK EKRNKLMEDK TRWTSLCAFW LGMDQKPRRA MSREKMDVIQ
201: KLAVKHFFIN KNVTSPLVMD FLFKGLNSLV LDTNKEKIIL TISKQIVRLL KDDSDASENT LKTLEDEPKK EIAFAAKELA VPIVSVDNDM FVLADDAMLL
301: LEKAVLEPFP DERVPPNRIE VDYDEESDDE KLLTEYARHT LEVFVLDHIF CNKIEIAYKE ASELKMHEEL IREEDLKKRR VNSTKSS
101: LPRLLDGFID DSGSLIIKAQ VQVIRKSVNG PFPCLDSQYR KELLRVYFTV VKQIFLRFMK EKRNKLMEDK TRWTSLCAFW LGMDQKPRRA MSREKMDVIQ
201: KLAVKHFFIN KNVTSPLVMD FLFKGLNSLV LDTNKEKIIL TISKQIVRLL KDDSDASENT LKTLEDEPKK EIAFAAKELA VPIVSVDNDM FVLADDAMLL
301: LEKAVLEPFP DERVPPNRIE VDYDEESDDE KLLTEYARHT LEVFVLDHIF CNKIEIAYKE ASELKMHEEL IREEDLKKRR VNSTKSS
0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.