CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08485	Canola	cytosol	58.24	12.8
VIT_08s0032g00600.t01	Wine grape	cytosol	67.03	10.93
Bra009210.1-P	Field mustard	cytosol	65.93	10.91
CDY55765	Canola	cytosol	66.48	10.85
CDX73847	Canola	cytosol	65.38	10.85
CDX81009	Canola	cytosol	66.48	10.82
CDY01069	Canola	cytosol	65.93	10.76
CDX70087	Canola	cytosol	65.93	10.75
CDX98939	Canola	cytosol	65.93	10.75
CDY53923	Canola	cytosol	65.38	10.71
AT5G06600.1	Thale cress	cytosol	65.38	10.66
CDY14077	Canola	cytosol	65.38	10.66
CDY04994	Canola	cytosol	65.38	10.66
PGSC0003DMT400072539	Potato	cytosol	65.38	10.61
Solyc10g081610.1.1	Tomato	cytosol, extracellular, nucleus	64.84	10.52
CDY26906	Canola	cytosol	8.24	6.82
CDX73257	Canola	cytosol	13.74	6.16
CDY01258	Canola	cytosol	6.59	5.85
CDX93823	Canola	cytosol	12.09	5.68
CDY01264	Canola	cytosol	6.04	5.37
CDY47909	Canola	cytosol	2.75	4.39
CDY00212	Canola	cytosol	19.78	3.51
CDY05943	Canola	cytosol	19.78	3.46
CDY08151	Canola	cytosol	19.78	3.46
CDY72484	Canola	cytosol	2.75	3.05
CDY32539	Canola	nucleus	15.93	2.88
CDX86642	Canola	nucleus	16.48	2.87
CDY10066	Canola	nucleus	15.93	2.86
CDY18218	Canola	nucleus	15.93	2.74
CDX89828	Canola	nucleus	15.93	2.73
CDX94711	Canola	nucleus	11.54	2.18
CDY22344	Canola	nucleus	10.44	2.05
CDX86966	Canola	cytosol	7.69	1.9
CDY11532	Canola	nucleus, plastid	14.29	1.57
CDY58924	Canola	nucleus, plastid	14.29	1.57
CDY67533	Canola	cytosol, nucleus	1.65	1.56
CDY35362	Canola	nucleus, plastid	13.19	1.46
CDX76975	Canola	nucleus, plastid	12.64	1.41
CDY68000	Canola	nucleus	0.0	0.0

Protein Annotations

Gene3D:2.20.210.10	Gene3D:3.90.70.10	MapMan:35.1	GO:A0A078C621	EnsemblPlants:CDX72290	ProteinID:CDX72290
ProteinID:CDX72290.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538
GO:GO:0036459	EnsemblPlantsGene:GSBRNA2T00099770001	PFAM:PF00443	ScanProsite:PS00973	PANTHER:PTHR24006	PANTHER:PTHR24006:SF577
InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	TMHMM:TMhelix	UniParc:UPI0004EDB79F	InterPro:USP_CS
SEG:seg	:	:	:	:	:

Description

BnaC07g43120D

Coordinates

chrLK031796:+:482168..483464

Molecular Weight (calculated)

20952.0 Da

IEP (calculated)

7.531

GRAVY (calculated)

-0.474

Length

182 amino acids

Sequence
(BLAST)

001: MVGMSVQPFN GKPMKTARSH GKKFRVTVEK ETCRILGNLG WAYMQLSKDP GERKNMEPNQ YLQLDVKGCK DVYASFDKYV EVERLEGDNK YQAEGHDLQI
101: NDRYEFPLQL DLDRENGKYL SPDADKSVRN LYTLHSVLVH SGGVHGGHYY AFIRPTLSDQ WYVSFCYLCF SVSIILVVHC NI

Best Arabidopsis Sequence Match ( AT3G11910.1 )
(BLAST)

0001: MTMMTPPPLD QQEDEEMLVP NPDLVEGPQP MEVAQTDPAA TAVENPPPED PPSLKFTWTI PMFTRLNTRK HYSDVFVVGG YKWRILIFPK GNNVDHLSMY
0101: LDVADAANLP YGWSRYSQFS LAVVNQVNNR YSIRKETQHQ FNARESDWGF TSFMPLSELY EPTRGYLVND TVLIEAEVAV RKVLDYWSYD SKKETGFVGL
0201: KNQGATCYMN SLLQTLYHIP YFRKAVYHMP TTENDAPTAS IPLALQSLFY KLQYNDTSVA TKELTKSFGW DTYDSFMQHD VQELNRVLCE KLEDKMKGTV
0301: VEGTIQKLFE GHHMNYIECI NVDYKSTRKE SFYDLQLDVK GCKDVYASFD KYVEVERLEG DNKYHAEGHD LQDAKKGVLF IDFPPVLQLQ LKRFEYDFMR
0401: DTMVKINDRY EFPLQLDLDR EDGRYLSPDA DKSVRNLYTL HSVLVHSGGV HGGHYYAFIR PTLSDQWYKF DDERVTKEDV KRALEEQYGG EEELPQNNPG
0501: FNNPPFKFTK YSNAYMLVYI RESDKDKIIC NVDEKDIAEH LRVRLKKEQE EKEDKRKYKA QAHLFTTIKV ARDDDITEQI GKNIYFDLVD HEKVRSFRIQ
0601: KQTPFQQFKE EVAKEFGVPV QLQRFWIWAK RQNHTYRPNR PLSPNEELQT VGQIREASNK ANNAELKLFL EIERGPDDLP IPPPEKTSED ILLFFKLYDP
0701: ENAVLRYVGR LMVKSSSKPM DIVGQLNKMA GFAPDEEIEL FEEIKFEPCV MCEQIDKKTS FRLCQIEDGD IICYQKPLSI EESEFRYPDV PSFLEYVQNR
0801: ELVRFRTLEK PKEDEFTMEL SKLHTYDDVV ERVAEKLGLD DPSKLRLTSH NCYSQQPKPQ PIKYRGVDHL SDMLVHYNQT SDILYYEVLD IPLPELQGLK
0901: TLKVAFHSAT KDEVIIHNIR LPKQSTVGDV INELKTKVEL SHQDAELRLL EVFFHKIYKI FPSTERIENI NDQYWTLRAE EIPEEEKNIG PNDRLIHVYH
1001: FTKEAGQNQQ VQNFGEPFFL VIHEGETLEE IKTRIQKKLH VPDEDFAKWK FASFSMGRPD YLLDTDVVYN RFQRRDVYGA WEQYLGLEHI DNAPKRAYAA
1101: NQNRHAYEKP VKIYN

Arabidopsis Description

UBP13UBP13 [Source:UniProtKB/TrEMBL;Acc:A0A178VEE0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.