Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32539 | Canola | nucleus | 94.77 | 95.53 |
| CDX86642 | Canola | nucleus | 81.07 | 78.66 |
| CDX89828 | Canola | nucleus | 78.99 | 75.49 |
| CDY68000 | Canola | nucleus | 7.89 | 75.47 |
| CDY18218 | Canola | nucleus | 78.3 | 75.05 |
| AT1G04300.3 | Thale cress | nucleus | 77.81 | 72.92 |
| PGSC0003DMT400042094 | Potato | cytosol | 26.43 | 65.85 |
| OQU79503 | Sorghum | nucleus | 27.12 | 60.71 |
| CDX73257 | Canola | cytosol | 22.58 | 56.4 |
| CDX93823 | Canola | cytosol | 20.32 | 53.23 |
| VIT_05s0020g04980.t01 | Wine grape | nucleus | 56.11 | 49.65 |
| CDY26906 | Canola | cytosol | 10.75 | 49.55 |
| KRH31732 | Soybean | nucleus | 55.23 | 49.17 |
| KRG92287 | Soybean | nucleus | 54.93 | 48.86 |
| KRH34524 | Soybean | nucleus | 54.14 | 48.12 |
| CDY01258 | Canola | cytosol | 9.37 | 46.34 |
| CDY01264 | Canola | cytosol | 9.37 | 46.34 |
| KRG90366 | Soybean | endoplasmic reticulum, plasma membrane | 55.13 | 45.52 |
| Os05t0508700-01 | Rice | nucleus | 34.22 | 45.01 |
| Solyc03g005430.2.1 | Tomato | nucleus | 50.3 | 44.39 |
| Solyc06g053750.2.1 | Tomato | nucleus | 48.82 | 43.5 |
| CDX94711 | Canola | nucleus | 41.22 | 43.41 |
| CDY22344 | Canola | nucleus | 39.45 | 43.15 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 45.66 | 43.03 |
| Solyc09g089560.2.1 | Tomato | nucleus | 46.45 | 42.66 |
| EES16279 | Sorghum | nucleus | 43.89 | 39.66 |
| TraesCS5A01G060400.1 | Wheat | nucleus | 43.39 | 39.18 |
| TraesCS5B01G071600.1 | Wheat | nucleus | 43.29 | 39.13 |
| TraesCS5D01G072000.1 | Wheat | nucleus | 43.29 | 39.09 |
| HORVU5Hr1G016190.3 | Barley | nucleus | 43.1 | 38.91 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 45.46 | 32.65 |
| KXG22306 | Sorghum | nucleus | 40.93 | 32.22 |
| Os01t0775300-01 | Rice | cytosol, mitochondrion, nucleus | 41.32 | 32.16 |
| EES01550 | Sorghum | nucleus | 38.26 | 32.07 |
| TraesCS3D01G310000.1 | Wheat | nucleus | 39.05 | 30.79 |
| TraesCS1A01G325900.1 | Wheat | nucleus | 41.72 | 30.48 |
| TraesCS1B01G339200.1 | Wheat | nucleus | 41.62 | 30.45 |
| TraesCS3B01G343300.2 | Wheat | nucleus | 39.55 | 30.4 |
| TraesCS1D01G327700.1 | Wheat | nucleus | 41.52 | 30.33 |
| TraesCS3A01G321300.2 | Wheat | nucleus | 39.05 | 30.11 |
| HORVU3Hr1G075800.5 | Barley | cytosol, nucleus, plastid | 39.74 | 29.46 |
| HORVU1Hr1G078170.6 | Barley | cytosol | 41.62 | 29.35 |
| PGSC0003DMT400042093 | Potato | nucleus | 17.55 | 26.65 |
| CDY72484 | Canola | cytosol | 3.75 | 23.17 |
| Os12t0597200-01 | Rice | cytosol, nucleus, plastid | 6.8 | 22.33 |
| CDX72290 | Canola | cytosol, mitochondrion, plastid | 2.86 | 15.93 |
| CDY14077 | Canola | cytosol | 16.07 | 14.61 |
| CDY04994 | Canola | cytosol | 16.07 | 14.61 |
| CDX70087 | Canola | cytosol | 15.78 | 14.34 |
| CDY55765 | Canola | cytosol | 15.68 | 14.26 |
| CDX98939 | Canola | cytosol | 15.58 | 14.16 |
| CDX81009 | Canola | cytosol | 15.29 | 13.86 |
| CDY53923 | Canola | cytosol | 14.89 | 13.59 |
| CDX73847 | Canola | cytosol | 14.6 | 13.49 |
| CDY01069 | Canola | cytosol | 14.6 | 13.27 |
| CDY47909 | Canola | cytosol | 1.38 | 12.28 |
| CDY08485 | Canola | cytosol | 8.78 | 10.75 |
| CDY67533 | Canola | cytosol, nucleus | 1.38 | 7.29 |
| CDY00212 | Canola | cytosol | 7.3 | 7.21 |
| CDY08151 | Canola | cytosol | 7.3 | 7.12 |
| CDY05943 | Canola | cytosol | 7.2 | 7.02 |
| CDY58924 | Canola | nucleus, plastid | 10.55 | 6.47 |
| CDY11532 | Canola | nucleus, plastid | 10.45 | 6.42 |
| CDY35362 | Canola | nucleus, plastid | 10.26 | 6.31 |
| CDX76975 | Canola | nucleus, plastid | 9.96 | 6.17 |
| CDX86966 | Canola | cytosol | 4.34 | 5.98 |
Protein Annotations
| EnsemblPlants:CDY10066 | EnsemblPlantsGene:GSBRNA2T00031862001 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil | PANTHER:PTHR45001 |
| PFAM:PF00917 | PFscan:PS50144 | ProteinID:CDY10066 | ProteinID:CDY10066.1 | SEG:seg | SMART:SM00061 |
| SUPFAM:SSF49599 | UniParc:UPI0004EE1B42 | UniProt:A0A078F9P4 | MapMan:22.5.1.6 | : | : |
Description
BnaC08g43850DBnaC08g43850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F9P4]
Coordinates
chrLK032000:+:776303..780807
Molecular Weight (calculated)
113153.0 Da
IEP (calculated)
7.289
GRAVY (calculated)
-0.752
Length
1014 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAETVDEDSG VGRSVEASTN GQYSLSGEAL SQWRCSTQVE NGTPSTSPSY WDTDDDDDYG LRPSQLFVKH KWKIEKFSEI KKRELRSSVF EAGGYKWYIL
0101: IYPQGCDVWH HLSLFLCVAN HEKLLPGWGH FAQFTIAVAN KDPKKSKFSD TLHRFWKKEH DWGWKKFIES QKLNDGFVDD SDCLTIEAQV QVIRERVDRP
0201: FRCLYRGYRR ELVRVYLTNV VQHCRLFVEE KRSKLERLIE DKARWTSFGV FWLGMDQNSR RRMSTEKMDV ILKGVVKQFF IEKEVIATLV MDFLYSGLKA
0301: LEGQTKSKKS RPRSLDPKEL PAPLVTVDKD MFVLADDVLL LLERAALEPL PPNSDKGPRN RTKDVNDGED DNNEAIERDE RRLTELGRRT VEIFVLSHIF
0401: NSKIEVAYRE AVALKRQEEL IREEEEEWLA ETEQRAKRGA AEREKKSKKK QAKQKRNRNK GKDKRKEEKV TFATHEEEKD LVTEKAQSPV EKTDTLGDVS
0501: DISDSVDGSA EILHPDLEDG DSSSVHWDTD ALGRSRESAI SISTANGIAE RKNQSTMEDS SSTCSNDSIR SGFTNGSSYK GNALNFRNQN SPNKGKNQPR
0601: SQNSTSESDW VVVSHNQEPE SSRNRSPIGK EAQVIVNSVD MDRPKEKSAA VLTSLRTAAK NPSPLTQTKL EKKNASVAPN KKVMPVSGPP SSNQVVPPSS
0701: DIGLRADVQK IPAPKQPATT TITRPSSAPV IPAMRPAPIV VSSVQPTTSF PRSVSSAGRL GPDSSLHNQQ TYTPQSYKHA IVGNSPGSSS SFNHHPSSHG
0801: VAPTTLPSAS YSQTPTSSYQ SSFPFSQDGR FLGGRSLNSV NMGMNNPYAP TVTSNSSRQQ AQNLMTDEFP HLDIINDLLE DENCSNMVFN GSMFSSQPQM
0901: LDRQYSYHGG GAADFGISGE LLSGGRSRSF GEEGYHYMPH NGLSAAGRYA DGLIPTQWQM ANVDLSLLGM RNNSSNLGDT TAYHHNALYG LDSSNPSFSS
1001: GINGYTEFRP SNGH
0101: IYPQGCDVWH HLSLFLCVAN HEKLLPGWGH FAQFTIAVAN KDPKKSKFSD TLHRFWKKEH DWGWKKFIES QKLNDGFVDD SDCLTIEAQV QVIRERVDRP
0201: FRCLYRGYRR ELVRVYLTNV VQHCRLFVEE KRSKLERLIE DKARWTSFGV FWLGMDQNSR RRMSTEKMDV ILKGVVKQFF IEKEVIATLV MDFLYSGLKA
0301: LEGQTKSKKS RPRSLDPKEL PAPLVTVDKD MFVLADDVLL LLERAALEPL PPNSDKGPRN RTKDVNDGED DNNEAIERDE RRLTELGRRT VEIFVLSHIF
0401: NSKIEVAYRE AVALKRQEEL IREEEEEWLA ETEQRAKRGA AEREKKSKKK QAKQKRNRNK GKDKRKEEKV TFATHEEEKD LVTEKAQSPV EKTDTLGDVS
0501: DISDSVDGSA EILHPDLEDG DSSSVHWDTD ALGRSRESAI SISTANGIAE RKNQSTMEDS SSTCSNDSIR SGFTNGSSYK GNALNFRNQN SPNKGKNQPR
0601: SQNSTSESDW VVVSHNQEPE SSRNRSPIGK EAQVIVNSVD MDRPKEKSAA VLTSLRTAAK NPSPLTQTKL EKKNASVAPN KKVMPVSGPP SSNQVVPPSS
0701: DIGLRADVQK IPAPKQPATT TITRPSSAPV IPAMRPAPIV VSSVQPTTSF PRSVSSAGRL GPDSSLHNQQ TYTPQSYKHA IVGNSPGSSS SFNHHPSSHG
0801: VAPTTLPSAS YSQTPTSSYQ SSFPFSQDGR FLGGRSLNSV NMGMNNPYAP TVTSNSSRQQ AQNLMTDEFP HLDIINDLLE DENCSNMVFN GSMFSSQPQM
0901: LDRQYSYHGG GAADFGISGE LLSGGRSRSF GEEGYHYMPH NGLSAAGRYA DGLIPTQWQM ANVDLSLLGM RNNSSNLGDT TAYHHNALYG LDSSNPSFSS
1001: GINGYTEFRP SNGH
0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.