Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22344 | Canola | nucleus | 82.76 | 85.98 |
| CDY68000 | Canola | nucleus | 6.23 | 56.6 |
| OQU79503 | Sorghum | nucleus | 22.12 | 47.02 |
| CDX73257 | Canola | cytosol | 19.0 | 45.07 |
| CDX93823 | Canola | cytosol | 17.34 | 43.15 |
| CDX89828 | Canola | nucleus | 46.52 | 42.22 |
| CDY18218 | Canola | nucleus | 46.0 | 41.87 |
| CDX86642 | Canola | nucleus | 45.28 | 41.72 |
| CDY10066 | Canola | nucleus | 43.41 | 41.22 |
| CDY32539 | Canola | nucleus | 42.99 | 41.15 |
| CDY26906 | Canola | cytosol | 8.93 | 39.09 |
| Os05t0508700-01 | Rice | nucleus | 27.31 | 34.11 |
| CDY01264 | Canola | cytosol | 7.17 | 33.66 |
| CDY01258 | Canola | cytosol | 7.06 | 33.17 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 35.93 | 32.16 |
| EES16279 | Sorghum | nucleus | 35.62 | 30.57 |
| TraesCS5B01G071600.1 | Wheat | nucleus | 34.99 | 30.04 |
| TraesCS5A01G060400.1 | Wheat | nucleus | 34.99 | 30.01 |
| TraesCS5D01G072000.1 | Wheat | nucleus | 34.99 | 30.01 |
| HORVU5Hr1G016190.3 | Barley | nucleus | 34.68 | 29.74 |
| EES01550 | Sorghum | nucleus | 32.09 | 25.54 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 36.97 | 25.21 |
| Os01t0775300-01 | Rice | cytosol, mitochondrion, nucleus | 33.64 | 24.87 |
| TraesCS3D01G310000.1 | Wheat | nucleus | 32.81 | 24.57 |
| KXG22306 | Sorghum | nucleus | 32.4 | 24.22 |
| TraesCS3B01G343300.2 | Wheat | nucleus | 32.92 | 24.03 |
| TraesCS3A01G321300.2 | Wheat | nucleus | 32.61 | 23.88 |
| TraesCS1B01G339200.1 | Wheat | nucleus | 33.75 | 23.45 |
| HORVU3Hr1G075800.5 | Barley | cytosol, nucleus, plastid | 33.23 | 23.39 |
| TraesCS1A01G325900.1 | Wheat | nucleus | 33.54 | 23.27 |
| TraesCS1D01G327700.1 | Wheat | nucleus | 33.23 | 23.05 |
| HORVU1Hr1G078170.6 | Barley | cytosol | 33.13 | 22.18 |
| CDY72484 | Canola | cytosol | 3.53 | 20.73 |
| Os12t0597200-01 | Rice | cytosol, nucleus, plastid | 5.82 | 18.12 |
| Zm00001d034390_P001 | Maize | nucleus | 4.47 | 16.67 |
| CDY14077 | Canola | cytosol | 14.85 | 12.81 |
| CDY04994 | Canola | cytosol | 14.85 | 12.81 |
| CDY55765 | Canola | cytosol | 14.75 | 12.74 |
| CDX81009 | Canola | cytosol | 14.64 | 12.61 |
| CDX70087 | Canola | cytosol | 14.54 | 12.54 |
| CDX98939 | Canola | cytosol | 14.54 | 12.54 |
| CDY53923 | Canola | cytosol | 14.23 | 12.33 |
| CDY01069 | Canola | cytosol | 14.23 | 12.29 |
| CDX73847 | Canola | cytosol | 13.71 | 12.03 |
| CDX72290 | Canola | cytosol, mitochondrion, plastid | 2.18 | 11.54 |
| CDY47909 | Canola | cytosol | 1.25 | 10.53 |
| CDY08485 | Canola | cytosol | 8.62 | 10.02 |
| CDY67533 | Canola | cytosol, nucleus | 1.45 | 7.29 |
| CDY05943 | Canola | cytosol | 7.27 | 6.73 |
| CDY00212 | Canola | cytosol | 7.17 | 6.73 |
| CDY08151 | Canola | cytosol | 7.17 | 6.63 |
| CDY35362 | Canola | nucleus, plastid | 9.97 | 5.83 |
| CDY11532 | Canola | nucleus, plastid | 9.97 | 5.81 |
| CDY58924 | Canola | nucleus, plastid | 9.97 | 5.8 |
| CDX86966 | Canola | cytosol | 4.36 | 5.71 |
| CDX76975 | Canola | nucleus, plastid | 9.66 | 5.68 |
Protein Annotations
| EnsemblPlants:CDX94711 | EnsemblPlantsGene:GSBRNA2T00158090001 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil | PANTHER:PTHR45001 |
| PFAM:PF00917 | PFscan:PS50144 | ProteinID:CDX94711 | ProteinID:CDX94711.1 | SEG:seg | SMART:SM00061 |
| SUPFAM:SSF49599 | UniParc:UPI0004EED2D2 | MapMan:22.5.1.6 | : | : | : |
Description
BnaC07g17200D
Coordinates
chrLK031884:+:105521..110300
Molecular Weight (calculated)
108139.0 Da
IEP (calculated)
8.454
GRAVY (calculated)
-0.768
Length
963 amino acids
Sequence
(BLAST)
(BLAST)
001: MSETSNEDYR SGQSSEEDNS NGQISHSEAL AEWRSSDQVE NGFPSTWPPY WDIDDGSKHS ELYGKHTWKI EKYSEISKPE LRSDVFDAGG YKWYITIYPQ
101: GWDVCNHLAL YLCLANHAEL PPGCNHFVQY TLALVNKDPK KSIYLVNRLK KLEHHWGGNN FIELPKLQEG YIDDLDSLII KAQVQVIREK IDKPLRCLSS
201: QYRRELLRVY VPYVENIWWQ FMELERIRFL ELMQDKEKWE SFSSFWLRLD QNTRRKMSRE KMDVVLNVAA KIFFVLRQGT STLMMDSLYS GWKTIEEETK
301: KKKNRQVQMD NVELPAGPAP IVSVDQDMFV LVDDLLVLMK RTVMAPLIPI KEEKGSQNPS KVGDVGEEYS KEAIGRDESR LTEVGRRTME MLVLAHIYSN
401: KAKVAYIEHT AWERQEELIR EEEEECLAES KHKANRGTTE KERKSKKKQA KQKKNKKEKR KEERLRSQTE ERDTEKEEKV RAKAESSGDK PDTLGESSPV
501: QCELDASKIH HPPSEDTSRG RGSSISIPSG VAERKYTSVY SDQSVRTGVA SGSYKGNVSN GQTKIWRIKG KTQPRNVSGA NSSATETENQ PSRHASNPKS
601: QSHSSETRRV VEAGVVISPI QEAQNPREHN PVTKDRGTVQ RQEKSPAVFS PPKASPWNLK SVAQAKPEKR GVFKLDTVPN RKAISPSSDQ ASPSRHIEFQ
701: TVGSRAAVQN TTSPIPSMST RPLRAPTFLP KQAAPRTSAT SFARSVSSTG PVSAPTHTQT YIPQSYKNAI VGSDHSSSQS TGTSALVSVS NQSGFPLNVG
801: SAEVSSGGLL WTGGSSSNRD TTTTTTISGN HRMNAYSAPV STSMRQNDVQ IRRPAQSLMT DEFPHLGIIN DLLEEEPVLM DTTSGYRLPQ WLSDVYSFLA
901: DMGIAGRSRS YTDDGFYQSY GEHMSDSSSS SSSSLYGNGQ SANMDLSLLA TRSQNDAFYL PFL
101: GWDVCNHLAL YLCLANHAEL PPGCNHFVQY TLALVNKDPK KSIYLVNRLK KLEHHWGGNN FIELPKLQEG YIDDLDSLII KAQVQVIREK IDKPLRCLSS
201: QYRRELLRVY VPYVENIWWQ FMELERIRFL ELMQDKEKWE SFSSFWLRLD QNTRRKMSRE KMDVVLNVAA KIFFVLRQGT STLMMDSLYS GWKTIEEETK
301: KKKNRQVQMD NVELPAGPAP IVSVDQDMFV LVDDLLVLMK RTVMAPLIPI KEEKGSQNPS KVGDVGEEYS KEAIGRDESR LTEVGRRTME MLVLAHIYSN
401: KAKVAYIEHT AWERQEELIR EEEEECLAES KHKANRGTTE KERKSKKKQA KQKKNKKEKR KEERLRSQTE ERDTEKEEKV RAKAESSGDK PDTLGESSPV
501: QCELDASKIH HPPSEDTSRG RGSSISIPSG VAERKYTSVY SDQSVRTGVA SGSYKGNVSN GQTKIWRIKG KTQPRNVSGA NSSATETENQ PSRHASNPKS
601: QSHSSETRRV VEAGVVISPI QEAQNPREHN PVTKDRGTVQ RQEKSPAVFS PPKASPWNLK SVAQAKPEKR GVFKLDTVPN RKAISPSSDQ ASPSRHIEFQ
701: TVGSRAAVQN TTSPIPSMST RPLRAPTFLP KQAAPRTSAT SFARSVSSTG PVSAPTHTQT YIPQSYKNAI VGSDHSSSQS TGTSALVSVS NQSGFPLNVG
801: SAEVSSGGLL WTGGSSSNRD TTTTTTISGN HRMNAYSAPV STSMRQNDVQ IRRPAQSLMT DEFPHLGIIN DLLEEEPVLM DTTSGYRLPQ WLSDVYSFLA
901: DMGIAGRSRS YTDDGFYQSY GEHMSDSSSS SSSSLYGNGQ SANMDLSLLA TRSQNDAFYL PFL
0001: MSESTNEDSG AGRSSLEENS NGQRSQSEEA IAEWRSSEQV ENGTPSTSPP YWDIDDDDDF GSKPSQLFGK NTWTIEKFSD INKRELRGDV FEVGGYKWYI
0101: LIYPQGCDVC NHLSLFLCVA HHEKLLPGWS HFAQFTIAVS NKDPKKSKHS DTLHRFWKKE HDWGWKKFIE LPKLKEGFID DSGCLTIKAQ VQVIRERVDR
0201: PFRCLHYKYR EELVRVYLGN VEQICWRFVE EKRSKLGRLI EDKAKWKSFC AFWMGLDQNS RRRMSREKMD VILKIVVKHF FVEKEVTSTL VMDSLYSGLK
0301: ALEGQNKNKE SRPRLMDTEE STAPIVSVDK DSFALVDDVL LLLEKAALEP LPKKEEKSSQ NRTKDGNAGE EFSREAVERD DRRLTELGRR TVEIFVLAHI
0401: FSNKIEVAYQ EAIAWKRQEE LIREEEEAWL AESEQKGKRG ASEKEKKSKK KQAKQKKNKN KGKEMRKEDK VRTQTEEREI EKEECVRAIA ESSAEKPDTL
0501: GDVSDVSDSV DSSAEILQLD SEDRESSPVH WEMDASEVHP PSAGDTSRGR GNSFSIPNGV AERKGLSTMD DSSSTCSNDS IQSGVANGSY KGNVLNCQSQ
0601: KWFSNGKIQP GKVSDSNSLA SEKEHQPSRL ASDPKNQSHS SDIRRVGEAD IVISHIQKPE SPKERSPVSK DPNMIQMKEK SAAVLSPSRA APWNPPSPVQ
0701: AKPEKKGVSN VEAVPNRKVI SVKSPSSHHA SPSREAQLQT VGPRADIQKI ASPKPVEQPA PPMSRPLSAP IIPPTQAAPV ISAVQTSTAS LARSMSSTGR
0801: LGSPTHSQAY NPQSYKHAIV GSSGFTHPSS QSSGTSTLPP YSHPSPISVS NQSGFPINVG SWDVSSGGLL WTGGSSSTRD TTTTISGNHK TNTYNAPVVT
0901: TSIRPTNVQI GRTAQSLMTD EFPHLDIIND LLADEHGTMD NSVYRVPQQF NNQYSYHGGA DLGISSRSRS YSDDGFHQSY GEYMPHSASS SPYGNGQTQS
1001: QWQMANMDFS LPAMRNQDDV SASATATYSY FDLDSSNPNL SGINGYRDFR PSNGH
0101: LIYPQGCDVC NHLSLFLCVA HHEKLLPGWS HFAQFTIAVS NKDPKKSKHS DTLHRFWKKE HDWGWKKFIE LPKLKEGFID DSGCLTIKAQ VQVIRERVDR
0201: PFRCLHYKYR EELVRVYLGN VEQICWRFVE EKRSKLGRLI EDKAKWKSFC AFWMGLDQNS RRRMSREKMD VILKIVVKHF FVEKEVTSTL VMDSLYSGLK
0301: ALEGQNKNKE SRPRLMDTEE STAPIVSVDK DSFALVDDVL LLLEKAALEP LPKKEEKSSQ NRTKDGNAGE EFSREAVERD DRRLTELGRR TVEIFVLAHI
0401: FSNKIEVAYQ EAIAWKRQEE LIREEEEAWL AESEQKGKRG ASEKEKKSKK KQAKQKKNKN KGKEMRKEDK VRTQTEEREI EKEECVRAIA ESSAEKPDTL
0501: GDVSDVSDSV DSSAEILQLD SEDRESSPVH WEMDASEVHP PSAGDTSRGR GNSFSIPNGV AERKGLSTMD DSSSTCSNDS IQSGVANGSY KGNVLNCQSQ
0601: KWFSNGKIQP GKVSDSNSLA SEKEHQPSRL ASDPKNQSHS SDIRRVGEAD IVISHIQKPE SPKERSPVSK DPNMIQMKEK SAAVLSPSRA APWNPPSPVQ
0701: AKPEKKGVSN VEAVPNRKVI SVKSPSSHHA SPSREAQLQT VGPRADIQKI ASPKPVEQPA PPMSRPLSAP IIPPTQAAPV ISAVQTSTAS LARSMSSTGR
0801: LGSPTHSQAY NPQSYKHAIV GSSGFTHPSS QSSGTSTLPP YSHPSPISVS NQSGFPINVG SWDVSSGGLL WTGGSSSTRD TTTTISGNHK TNTYNAPVVT
0901: TSIRPTNVQI GRTAQSLMTD EFPHLDIIND LLADEHGTMD NSVYRVPQQF NNQYSYHGGA DLGISSRSRS YSDDGFHQSY GEYMPHSASS SPYGNGQTQS
1001: QWQMANMDFS LPAMRNQDDV SASATATYSY FDLDSSNPNL SGINGYRDFR PSNGH
Arabidopsis Description
TRAF1AMATH domain-containing protein At5g43560 [Source:UniProtKB/Swiss-Prot;Acc:Q8RY18]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.