Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| KXG34012 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G43560.1 | KXG34012 | AT1G27320.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d041395_P002 | Maize | nucleus | 90.11 | 91.0 |
| OQU79503 | Sorghum | nucleus | 35.03 | 86.75 |
| HORVU5Hr1G016190.3 | Barley | nucleus | 76.03 | 75.96 |
| TraesCS5D01G072000.1 | Wheat | nucleus | 76.03 | 75.96 |
| TraesCS5A01G060400.1 | Wheat | nucleus | 76.03 | 75.96 |
| TraesCS5B01G071600.1 | Wheat | nucleus | 75.76 | 75.76 |
| Os12t0597200-01 | Rice | cytosol, nucleus, plastid | 18.45 | 66.99 |
| PGSC0003DMT400042094 | Potato | cytosol | 23.08 | 63.64 |
| AT5G52330.3 | Thale cress | cytosol | 21.12 | 59.7 |
| Solyc06g053740.2.1 | Tomato | cytosol | 20.94 | 56.49 |
| CDX73257 | Canola | cytosol | 18.98 | 52.46 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 49.02 | 51.12 |
| Bra023279.1-P | Field mustard | cytosol | 15.33 | 49.28 |
| CDX93823 | Canola | cytosol | 16.76 | 48.58 |
| VIT_05s0020g04980.t01 | Wine grape | nucleus | 47.77 | 46.77 |
| KRH31732 | Soybean | nucleus | 47.06 | 46.36 |
| Solyc03g005430.2.1 | Tomato | nucleus | 46.17 | 45.08 |
| CDX89828 | Canola | nucleus | 42.42 | 44.86 |
| Bra015302.1-P | Field mustard | nucleus | 42.34 | 44.81 |
| CDY18218 | Canola | nucleus | 42.25 | 44.8 |
| KRH34524 | Soybean | nucleus | 45.54 | 44.79 |
| CDX86642 | Canola | nucleus | 41.27 | 44.31 |
| KRG92287 | Soybean | nucleus | 45.01 | 44.3 |
| AT5G43560.1 | Thale cress | nucleus | 41.35 | 43.98 |
| CDY10066 | Canola | nucleus | 39.66 | 43.89 |
| CDY32539 | Canola | nucleus | 39.22 | 43.74 |
| Solyc06g053750.2.1 | Tomato | nucleus | 43.94 | 43.32 |
| Solyc09g089560.2.1 | Tomato | nucleus | 42.42 | 43.12 |
| AT1G04300.3 | Thale cress | nucleus | 41.35 | 42.88 |
| KRG90366 | Soybean | endoplasmic reticulum, plasma membrane | 46.7 | 42.67 |
| Bra032518.1-P | Field mustard | nucleus | 37.79 | 42.66 |
| CDY26906 | Canola | cytosol | 7.75 | 39.55 |
| Bra010174.1-P | Field mustard | cytosol | 7.75 | 39.55 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 49.73 | 39.52 |
| AT4G16045.1 | Thale cress | cytosol | 13.28 | 39.01 |
| CDY01258 | Canola | cytosol | 6.95 | 38.05 |
| Bra033684.1-P | Field mustard | nucleus | 30.66 | 37.11 |
| CDY01264 | Canola | cytosol | 6.77 | 37.07 |
| CDY22344 | Canola | nucleus | 30.57 | 37.0 |
| EES01550 | Sorghum | nucleus | 39.66 | 36.78 |
| KXG22306 | Sorghum | nucleus | 41.71 | 36.34 |
| CDX94711 | Canola | nucleus | 30.57 | 35.62 |
| PGSC0003DMT400042093 | Potato | nucleus | 16.13 | 27.1 |
| EES09985 | Sorghum | cytosol | 14.35 | 14.4 |
| EES15989 | Sorghum | cytosol | 14.26 | 14.26 |
| KXG34448 | Sorghum | nucleus | 13.55 | 13.6 |
| KXG33467 | Sorghum | nucleus | 13.01 | 13.06 |
| OQU79121 | Sorghum | nucleus | 7.22 | 8.0 |
| EES07147 | Sorghum | nucleus, plastid | 11.23 | 7.57 |
| Bra041162.1-P | Field mustard | cytosol, nucleus, plastid | 1.16 | 6.53 |
Protein Annotations
| EnsemblPlants:EES16279 | EnsemblPlantsGene:SORBI_3008G153000 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil | PANTHER:PTHR45001 |
| PFAM:PF00917 | PFscan:PS50144 | ProteinID:EES16279 | ProteinID:EES16279.2 | SEG:seg | SMART:SM00061 |
| SUPFAM:SSF49599 | UniParc:UPI0003C6C337 | UniProt:C5YQZ5 | MapMan:22.5.1.6 | : | : |
Description
hypothetical protein
Coordinates
chr8:+:58542351..58551675
Molecular Weight (calculated)
124804.0 Da
IEP (calculated)
6.395
GRAVY (calculated)
-0.783
Length
1122 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAGTLTEDNG ADARSSSTEE MPSDQQSHSG DSLAEWRSSE QVENGTPSTS PAYSDTDDDD CGPRPSELYG KFTWRIDNFS QINKRELRSN SFDVGGFKWY
0101: ILIYPQGCDV CNHLSLFLCV ANHDKLLPGW SHFAQFTIAV INRDPKKSKY SDTLHRFWKK EHDWGWKKFM ELSKLHDGFI VEDVLTIKAQ VQVIREKTDR
0201: PFRCLDGQYR RELIRVYLSN VEQICRRFID ERRSKLSRLI EDKLGWSSFN GFWLAMDPSV RRHMTREKTE TILKVLVKQF FIEKEVTSTL VIDSLYSGLK
0301: ALEYQSKNKK AIPKLTETDA RSTPMVLIDQ DMFVLADDVI LLLERAALDT LPHQPLPTKD DKSSQNRTKD GNSGEEFSKD SIERDDRRLI ELGWKTLELF
0401: ALAHIFSRIE VAHQEAVALK RQEELIREEE AAGLAEIELK AKRNAAEKEK RAKKKQAKQK KNSRKSNKGK SGKSDINKEI LMDSSPSDDR ILDDFSGQTE
0501: EMSSNADNPE EVSDISDSRD DNSDVLHVDI EDRESSPVNW ETDAETQATV PGSSEVQNDH AGKRTSTVDD SSSTCSSDSV PSATVNGSYT GGAWTSVRSS
0601: SNRGNNRRNK DTEARAGFAQ GGSSSAHNGF IGSGSNASSH SKERHEPEDD KVVLQRKQHA QRHIDVISPS KSRMAESSFS SVSPVKKQPN MSHQPKFLLE
0701: STNSLNHRAS EVSGAVTATT TAGASSTPAA QLVSNKGPVS SAATQNEKPV LVTSRPLQVL LPSKSEAQKQ ASVTGSANTQ DISVSRPLSA PQVPAAKQSA
0801: PVTSTAPNAP LLSRSMSAVG RLGNEPSASA PSFIPRSRTY RNAMMEKSSG GGSSFTHQQG SSEQAVTPLQ SIFTSQPSIP SSETLSRKEE TSLRPGFTFG
0901: TVKPESLNPY QGREETSQQA SSSSSSSSDC MPSNSNIRSE IAKLNLNGRS RSKQLLSEIS TRFTPYQPQG LVADEFPHLD IINDLLDEEQ SDRRRVLQPG
1001: FVQQFSMPNG ASTPEYGLFS EPYLFDQSEQ YFDEEPPRFY SPLSSAPRRL RDRSYSHFDL PSYSSSSQFD DLMMSQWPYS RTDISMPSFE SDTSGYPYQA
1101: QDFPSSANRA SRYPSYRPAN GH
0101: ILIYPQGCDV CNHLSLFLCV ANHDKLLPGW SHFAQFTIAV INRDPKKSKY SDTLHRFWKK EHDWGWKKFM ELSKLHDGFI VEDVLTIKAQ VQVIREKTDR
0201: PFRCLDGQYR RELIRVYLSN VEQICRRFID ERRSKLSRLI EDKLGWSSFN GFWLAMDPSV RRHMTREKTE TILKVLVKQF FIEKEVTSTL VIDSLYSGLK
0301: ALEYQSKNKK AIPKLTETDA RSTPMVLIDQ DMFVLADDVI LLLERAALDT LPHQPLPTKD DKSSQNRTKD GNSGEEFSKD SIERDDRRLI ELGWKTLELF
0401: ALAHIFSRIE VAHQEAVALK RQEELIREEE AAGLAEIELK AKRNAAEKEK RAKKKQAKQK KNSRKSNKGK SGKSDINKEI LMDSSPSDDR ILDDFSGQTE
0501: EMSSNADNPE EVSDISDSRD DNSDVLHVDI EDRESSPVNW ETDAETQATV PGSSEVQNDH AGKRTSTVDD SSSTCSSDSV PSATVNGSYT GGAWTSVRSS
0601: SNRGNNRRNK DTEARAGFAQ GGSSSAHNGF IGSGSNASSH SKERHEPEDD KVVLQRKQHA QRHIDVISPS KSRMAESSFS SVSPVKKQPN MSHQPKFLLE
0701: STNSLNHRAS EVSGAVTATT TAGASSTPAA QLVSNKGPVS SAATQNEKPV LVTSRPLQVL LPSKSEAQKQ ASVTGSANTQ DISVSRPLSA PQVPAAKQSA
0801: PVTSTAPNAP LLSRSMSAVG RLGNEPSASA PSFIPRSRTY RNAMMEKSSG GGSSFTHQQG SSEQAVTPLQ SIFTSQPSIP SSETLSRKEE TSLRPGFTFG
0901: TVKPESLNPY QGREETSQQA SSSSSSSSDC MPSNSNIRSE IAKLNLNGRS RSKQLLSEIS TRFTPYQPQG LVADEFPHLD IINDLLDEEQ SDRRRVLQPG
1001: FVQQFSMPNG ASTPEYGLFS EPYLFDQSEQ YFDEEPPRFY SPLSSAPRRL RDRSYSHFDL PSYSSSSQFD DLMMSQWPYS RTDISMPSFE SDTSGYPYQA
1101: QDFPSSANRA SRYPSYRPAN GH
0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.