CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043312_P001	Maize	nucleus	91.32	91.41
HORVU3Hr1G075250.1	Barley	cytosol	26.57	80.71
KRH33457	Soybean	cytosol	10.47	80.14
KRH17929	Soybean	cytosol	30.14	76.07
TraesCS3A01G295900.7	Wheat	cytosol	72.72	73.64
TraesCS3D01G307100.1	Wheat	cytosol	72.72	73.64
TraesCS3B01G341000.1	Wheat	cytosol	72.63	73.55
KRG89898	Soybean	cytosol	24.6	72.75
Os01t0771400-00	Rice	plasma membrane	64.49	70.69
KRH73403	Soybean	nucleus	69.5	69.5
KRH14719	Soybean	nucleus	69.23	69.23
HORVU3Hr1G075220.5	Barley	endoplasmic reticulum	47.41	68.92
EES15989	Sorghum	cytosol	68.16	67.91
KXG34448	Sorghum	nucleus	67.71	67.71
EES09985	Sorghum	cytosol	66.91	66.91
KRG89895	Soybean	nucleus	44.45	66.36
KRH17931	Soybean	mitochondrion, nucleus	38.01	62.78
OQU79503	Sorghum	nucleus	8.68	21.41
OQU79121	Sorghum	nucleus	13.6	15.02
EES16279	Sorghum	nucleus	13.06	13.01
EES01550	Sorghum	nucleus	13.69	12.64
KXG22306	Sorghum	nucleus	13.24	11.49
EES07147	Sorghum	nucleus, plastid	14.94	10.03

Protein Annotations

MapMan:14.6.2.3	MapMan:19.2.3.1.1.5	Gene3D:2.60.210.10	Gene3D:3.10.20.90	Gene3D:3.90.70.10	UniProt:A0A1B6Q6D7
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	InterPro:IPR002083	InterPro:IPR008974	InterPro:IPR028889	EnsemblPlants:KXG33467
ProteinID:KXG33467	ProteinID:KXG33467.1	InterPro:MATH/TRAF_dom	PFAM:PF00443	PFAM:PF00917	PFAM:PF12436
PFAM:PF14533	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50144	PFscan:PS50235	PANTHER:PTHR24006
PANTHER:PTHR24006:SF565	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SMART:SM00061	EnsemblPlantsGene:SORBI_3003G310900	SUPFAM:SSF49599
SUPFAM:SSF54001	SUPFAM:SSF54236	InterPro:TRAF-like	UniParc:UPI00081ACD3D	InterPro:USP7_ICP0-binding_dom	InterPro:USP_C
InterPro:USP_CS	InterPro:USP_dom	InterPro:Ubiquitin-like_domsf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:63903002..63918358

Molecular Weight (calculated)

130607.0 Da

IEP (calculated)

6.031

GRAVY (calculated)

-0.669

Length

1118 amino acids

Sequence
(BLAST)

0001: MAVSGAPEQP QREQPQQDHD EEMLVPHQDA IEGPQQDVVE GPQPMEESAS AVENQLVPDT STSRFTWCIE NFSRRNVRKH YSDDFIVGGY KWRVLVFPRG
0101: NNGDHLSMYL DVADSNLLPP GWSRNAQFSL AVVNQLDSKA SLRKEAIHQF NSRESDWGFT SFMPLLDLYD SSKGYVVNDK CIIEAEVAVR KTFDFWNYDS
0201: KRMTGYVGLK NQGATCYMNS LLQTLYHIPY FRKAVYHMPT TENDTPSGNI PLALQSLFYK LQHCDNSVAT KELTKSFGWD SYDSFMQHDV QELNRVLCEK
0301: LENKMKGTPV EGAIQKLFEG HHMNYIECIN VDSKSTRKES FYDLALDVKG CSDVYASFDK YVAQERLEGD NKYQSEEHGL QDAKKGMLFI DFPPVLQLQL
0401: KRFEYDFVRD TMLKINDRYE FPLQLDLDRD DGKYLSPDAD RSVRNLYTLH SVLVHSGGVH GGHYYAFIRP KLSDQWYKFE DERVTKEDMK RALEEQYGGE
0501: EELPHTNGLK NAPIRFTKHS NAYMLVYIRE SDKEKIICDL DDEDIPDHLK VRLRKEQEEK ECKKKEKAEA HMFTALKVAR DSDFKEQIGR HMHFDLVDFD
0601: KVNSFRAPKN MSINDVKEEL SKEFGIPVES QRFWVWAKRQ NFTYRPSRPL TFLEETSAIG YLKDAIVAKL PNSEVRLFLE VHLGQENQGI ASGKTKEDIL
0701: IFFKLYDPEK EDLRYVGNFF VKASGKPSDI VERLNEIAGF PSDEDIELYE EVKFEPAVMC VPIESNISFR SSQIDNGDII CYQKRCLPDS MDRYRYPSVP
0801: SFFEYIHNRQ VVYFRLLDKP KEEGFSLELS KRSTYDDVVE KVARQLRLDD PSKIRLTQHN LSSQQPKPHH IKYRSLNYLS DMLHNHNQMC NILYYDVLDI
0901: PLPELESTRS LKITFENATN HEMSFHTMRL PKSNTLLDLI EDLKSKVELS CNDAEFRFFG VHLHKICKVY QPGDKIDSVN EPLYIEEVPE EEKNAGPHDR
1001: LVHVYHFEDN RHVQYFGEPF FFLIRDGEAL SDIKVRIQKR LQVPDEQFIK WKFAHVTFSR PEYLQDSDIV LNRFHKQKPV YGAWEQHLGL EHTATTPRRS
1101: YFGSQNRHSF ERPVKIYN

Best Arabidopsis Sequence Match ( AT5G06600.1 )
(BLAST)

0001: MTMMTPPPVD QPEDEEMLVP NSDLVDGPAQ PMEVTQPETA ASTVENQPAE DPPTLKFTWT IPNFSRQNTR KHYSDVFVVG GYKWRILIFP KGNNVDHLSM
0101: YLDVSDAASL PYGWSRYAQF SLAVVNQIHT RYTVRKETQH QFNARESDWG FTSFMPLSEL YDPSRGYLVN DTVLVEAEVA VRKVLDYWSY DSKKETGFVG
0201: LKNQGATCYM NSLLQTLYHI PYFRKAVYHM PTTENDAPTA SIPLALQSLF YKLQYNDTSV ATKELTKSFG WDTYDSFMQH DVQELNRVLC EKLEDKMKGT
0301: VVEGTIQQLF EGHHMNYIEC INVDFKSTRK ESFYDLQLDV KGCKDVYASF DKYVEVERLE GDNKYHAEGH GLQDAKKGVL FIDFPPVLQL QLKRFEYDFM
0401: RDTMVKINDR YEFPLELDLD REDGKYLSPD ADRSVRNLYT LHSVLVHSGG VHGGHYYAFI RPTLSDQWYK FDDERVTKED LKRALEEQYG GEEELPQTNP
0501: GFNNNPPFKF TKYSNAYMLV YIRESDKDKI ICNVDEKDIA EHLRVRLKKE QEEKEDKRRY KAQAHLYTII KVARDEDLKE QIGKDIYFDL VDHDKVRSFR
0601: IQKQTPFQQF KEEVAKEFGV PVQLQRFWIW AKRQNHTYRP NRPLTPQEEL QPVGQIREAS NKANTAELKL FLEVEHLDLR PIPPPEKSKE DILLFFKLYD
0701: PEKAVLSYAG RLMVKSSSKP MDITGKLNEM VGFAPDEEIE LFEEIKFEPC VMCEHLDKKT SFRLCQIEDG DIICFQKPLV NKEIECLYPA VPSFLEYVQN
0801: RQLVRFRALE KPKEDEFVLE LSKQHTYDDV VEKVAEKLGL DDPSKLRLTS HNCYSQQPKP QPIKYRGVDH LSDMLVHYNQ TSDILYYEVL DIPLPELQGL
0901: KTLKVAFHHA TKEEVVIHNI RLPKQSTVGD VINELKTKVE LSHPDAELRL LEVFYHKIYK IFPSTERIEN INDQYWTLRA EEIPEEEKNI GPNDRLILVY
1001: HFAKETGQNQ QVQNFGEPFF LVIHEGETLE EIKNRIQKKL HVSDEDFAKW KFAFMSMGRP EYLQDTDVVY NRFQRRDVYG AFEQYLGLEH ADTTPKRAYA
1101: ANQNRHAYEK PVKIYN

Arabidopsis Description

UBP12Ubiquitin carboxyl-terminal hydrolase 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPT1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.