CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0489200-01	Rice	cytosol	3.65	95.35
Os12t0489100-01	Rice	cytosol, extracellular, plasma membrane	46.35	94.37
HORVU5Hr1G031980.4	Barley	cytosol	93.05	93.21
TraesCS5A01G105900.1	Wheat	cytosol	92.87	93.12
TraesCS5B01G111000.7	Wheat	cytosol	93.32	92.9
Zm00001d041035_P002	Maize	cytosol	94.3	92.89
TraesCS5D01G123300.4	Wheat	cytosol	92.96	92.55
Zm00001d023640_P004	Maize	cytosol	91.62	90.81
TraesCS4D01G165800.1	Wheat	unclear	89.75	89.99
TraesCS4A01G163000.1	Wheat	cytosol	89.39	89.79
EES09985	Sorghum	cytosol	88.77	89.09
GSMUA_Achr5P02720_001	Banana	cytosol	87.25	87.8
GSMUA_Achr4P28400_001	Banana	cytosol	86.27	86.82
VIT_13s0073g00610.t01	Wine grape	cytosol	85.65	86.19
GSMUA_Achr10P...	Banana	cytosol	84.85	85.38
VIT_06s0009g00960.t01	Wine grape	cytosol	84.31	84.77
GSMUA_Achr4P22710_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	86.63	84.45
HORVU4Hr1G034950.2	Barley	cytosol	82.35	82.65
Solyc11g006320.1.1	Tomato	cytosol	81.19	81.56
KXG34448	Sorghum	nucleus	79.95	80.23
Solyc05g055090.2.1	Tomato	cytosol	79.41	79.62
KXG33467	Sorghum	nucleus	67.91	68.16
OQU79503	Sorghum	nucleus	9.36	23.18
OQU79121	Sorghum	nucleus	14.71	16.3
EES16279	Sorghum	nucleus	14.26	14.26
EES01550	Sorghum	nucleus	14.71	13.64
KXG22306	Sorghum	nucleus	14.62	12.73
EES07147	Sorghum	nucleus, plastid	15.78	10.63

Protein Annotations

MapMan:14.6.2.3	MapMan:19.2.3.1.1.5	Gene3D:2.60.210.10	Gene3D:3.10.20.90	Gene3D:3.90.70.10	EntrezGene:8063275
UniProt:C5YNS5	ncoils:Coil	EnsemblPlants:EES15989	ProteinID:EES15989	ProteinID:EES15989.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538
GO:GO:0036459	InterPro:IPR002083	InterPro:IPR008974	InterPro:IPR028889	InterPro:MATH/TRAF_dom	PFAM:PF00443
PFAM:PF00917	PFAM:PF12436	PFAM:PF14533	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50144
PFscan:PS50235	PANTHER:PTHR24006	PANTHER:PTHR24006:SF577	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SMART:SM00061
EnsemblPlantsGene:SORBI_3008G098900	SUPFAM:SSF49599	SUPFAM:SSF54001	unigene:Sbi.8216	InterPro:TRAF-like	UniParc:UPI0001A882C3
InterPro:USP7_ICP0-binding_dom	InterPro:USP_C	InterPro:USP_CS	InterPro:USP_dom	RefSeq:XP_002442151.1	SEG:seg

Description

hypothetical protein

Coordinates

chr8:+:46956379..46969119

Molecular Weight (calculated)

131782.0 Da

IEP (calculated)

5.815

GRAVY (calculated)

-0.691

Length

1122 amino acids

Sequence
(BLAST)

0001: MTMMTPPPLE QQQEDDEMLV PHQELPVAGP EAAPQPMEVV AQTEPANTAE SQPPEDPQTS RFTWTIESFS RLNTKKHYSD VFVVGGYKWR VLIFPKGNNV
0101: DHFSMYLDVA DSGNLPYGWS RYAQFSLAVV NQIHPKYTIR KDTQHQFNAR ESDWGFTSFM PLSDLYDPSR GYLVNDTVVV EAEVAVRRMV DYWTYDSKKE
0201: TGFVGLKNQG ATCYMNSLLQ TLYHTPYFRK AVYHMPTTEN DMPSGSIPLA LQSLFYKLQY SDNSVATKEL TKSFGWDTYD SFMQHDVQEL NRVLCEKLED
0301: KMKGTVVEGT IEQLFEGHHI NYIECINVDY KSSRKESFYD LQLDVKGCRD VYASFDKYVE VERLEGDNKY HAERYGLQDA RKGVLFLDFP PVLQLQLKRF
0401: EYDYMRDTMV KINDRYEFPL QLDLDRDNGK YLSPDADRSI RNLYTLHSVL VHSGGVHGGH YYAFIRPTLS DQWYKFDDER VTKEDTKKAL EEQYGGEEEL
0501: PQINPGFNNT PFKFTKYSNA YMLVYIRESD KEKIMCNVDE KDIAEHLRIR LKKEQEEKEH KKKEKAEAHL YTIIKIARDE DLKEQIGKNI YFDLVDHEKV
0601: RSFRIQKQLP FTSFKEEVAK EFGIPVQFQR FWLWAKRQNH TYRPNRPLTP HEEAQSVGQL REVSNKAHNA ELKLFLEVEL GPELCPIRPP EKSKEDILLF
0701: FKLYNAEKEE LRFVGRLFVK ALGKPSEILT KLNEMAGFSP NEEIELYEEI KFEPNVMCEH IDKKLTFRSS QLEDGDIICF QKAPVPDGDT QVRYPDVPSF
0801: LEYVHNRQVV HFRSLDKPKE DDFSLELSKL HTYDDVVERV AHQLGLDDPS KIRLTSHNCY SQQPKPQPIR YRGVEHLLDM LVHYNQTSDI LYYEVLDIPL
0901: PELQCLKTLK VAFHHATKDE VVVHSIRLPR NSTISDVITD LKTKVELSNP DAELRLLEVF YHKIYKIFPP HEKIENINDQ YWTLRAEEIP EEEKNLGPHD
1001: RLIHVYHFMK DPNQNQQIQN FGDPFLMVIR EGETSAEVME RIQRKLRVPD EEFSKWKLAF ISMNRPEYLQ DTDVVSARFQ RRDVYGAWEQ YLGLEHTDTT
1101: SKRSYTANQN RHTYEKPVKI YN

Best Arabidopsis Sequence Match ( AT5G06600.1 )
(BLAST)

0001: MTMMTPPPVD QPEDEEMLVP NSDLVDGPAQ PMEVTQPETA ASTVENQPAE DPPTLKFTWT IPNFSRQNTR KHYSDVFVVG GYKWRILIFP KGNNVDHLSM
0101: YLDVSDAASL PYGWSRYAQF SLAVVNQIHT RYTVRKETQH QFNARESDWG FTSFMPLSEL YDPSRGYLVN DTVLVEAEVA VRKVLDYWSY DSKKETGFVG
0201: LKNQGATCYM NSLLQTLYHI PYFRKAVYHM PTTENDAPTA SIPLALQSLF YKLQYNDTSV ATKELTKSFG WDTYDSFMQH DVQELNRVLC EKLEDKMKGT
0301: VVEGTIQQLF EGHHMNYIEC INVDFKSTRK ESFYDLQLDV KGCKDVYASF DKYVEVERLE GDNKYHAEGH GLQDAKKGVL FIDFPPVLQL QLKRFEYDFM
0401: RDTMVKINDR YEFPLELDLD REDGKYLSPD ADRSVRNLYT LHSVLVHSGG VHGGHYYAFI RPTLSDQWYK FDDERVTKED LKRALEEQYG GEEELPQTNP
0501: GFNNNPPFKF TKYSNAYMLV YIRESDKDKI ICNVDEKDIA EHLRVRLKKE QEEKEDKRRY KAQAHLYTII KVARDEDLKE QIGKDIYFDL VDHDKVRSFR
0601: IQKQTPFQQF KEEVAKEFGV PVQLQRFWIW AKRQNHTYRP NRPLTPQEEL QPVGQIREAS NKANTAELKL FLEVEHLDLR PIPPPEKSKE DILLFFKLYD
0701: PEKAVLSYAG RLMVKSSSKP MDITGKLNEM VGFAPDEEIE LFEEIKFEPC VMCEHLDKKT SFRLCQIEDG DIICFQKPLV NKEIECLYPA VPSFLEYVQN
0801: RQLVRFRALE KPKEDEFVLE LSKQHTYDDV VEKVAEKLGL DDPSKLRLTS HNCYSQQPKP QPIKYRGVDH LSDMLVHYNQ TSDILYYEVL DIPLPELQGL
0901: KTLKVAFHHA TKEEVVIHNI RLPKQSTVGD VINELKTKVE LSHPDAELRL LEVFYHKIYK IFPSTERIEN INDQYWTLRA EEIPEEEKNI GPNDRLILVY
1001: HFAKETGQNQ QVQNFGEPFF LVIHEGETLE EIKNRIQKKL HVSDEDFAKW KFAFMSMGRP EYLQDTDVVY NRFQRRDVYG AFEQYLGLEH ADTTPKRAYA
1101: ANQNRHAYEK PVKIYN

Arabidopsis Description

UBP12Ubiquitin carboxyl-terminal hydrolase 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPT1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.