Factsheet for Os12t0489200-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0163800-01	Rice	cytosol, plasma membrane	69.77	10.2
HORVU5Hr1G031980.4	Barley	cytosol	97.67	3.75
TraesCS5B01G111000.7	Wheat	cytosol	97.67	3.73
TraesCS5D01G123300.4	Wheat	cytosol	97.67	3.73
TraesCS5A01G105900.1	Wheat	cytosol	95.35	3.66
EES15989	Sorghum	cytosol	95.35	3.65
VIT_13s0073g00610.t01	Wine grape	cytosol	90.7	3.5
GSMUA_Achr5P02720_001	Banana	cytosol	90.7	3.5
VIT_06s0009g00960.t01	Wine grape	cytosol	90.7	3.49
TraesCS4A01G163000.1	Wheat	cytosol	90.7	3.49
TraesCS4D01G165800.1	Wheat	unclear	90.7	3.49
GSMUA_Achr4P28400_001	Banana	cytosol	88.37	3.41
GSMUA_Achr10P...	Banana	cytosol	88.37	3.41
GSMUA_Achr4P22710_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	90.7	3.39
Zm00001d023640_P004	Maize	cytosol	86.05	3.27
EES09985	Sorghum	cytosol	83.72	3.22
Solyc05g055090.2.1	Tomato	cytosol	83.72	3.22
Solyc11g006320.1.1	Tomato	cytosol	81.4	3.13
Os02t0613400-01	Rice	extracellular	18.6	2.71
Zm00001d052943_P023	Maize	plastid	62.79	2.02
Os12t0597200-01	Rice	cytosol, nucleus, plastid	13.95	1.94
Zm00001d041035_P002	Maize	cytosol	16.28	0.61
Os01t0775300-01	Rice	cytosol, mitochondrion, nucleus	13.95	0.46
HORVU4Hr1G034950.2	Barley	cytosol	6.98	0.27
Os01t0771400-00	Rice	plasma membrane	2.33	0.1
Os12t0489100-01	Rice	cytosol, extracellular, plasma membrane	0.0	0.0
Os11t0573000-01	Rice	cytosol, plasma membrane	0.0	0.0
Os05t0508700-01	Rice	nucleus	0.0	0.0
Os03t0192900-01	Rice	cytosol, nucleus	0.0	0.0
Os03t0192800-01	Rice	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:Os12t0489200-01	EnsemblPlantsGene:Os12g0489200	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006508
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987
GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	PANTHER:PTHR24006	PANTHER:PTHR24006:SF577
ProteinID:BAT17190.1	UniParc:UPI0000DD9EBC	UniProt:A0A0P0YA40	MapMan:35.1	:	:

Description

single domain MDC protein 13, single MATH domain containing protein 13Ubiquitin-specific protease 12. (Os12t0489200-01)

Coordinates

chr12:+:18347192..18349239

Molecular Weight (calculated)

5213.0 Da

IEP (calculated)

9.577

GRAVY (calculated)

-1.444

Length

43 amino acids

Sequence
(BLAST)

1: QRRDVYGAWE QYLGLEHTDT TPKRSYTANQ NRHTFEKPVK IYN

Best Arabidopsis Sequence Match ( AT5G06600.2 )
(BLAST)

0001: MTMMTPPPVD PEDEEMLVPN SDLVDGPAQP MEVTQPETAA STVENQPAED PPTLKFTWTI PNFSRQNTRK HYSDVFVVGG YKWRILIFPK GNNVDHLSMY
0101: LDVSDAASLP YGWSRYAQFS LAVVNQIHTR YTVRKETQHQ FNARESDWGF TSFMPLSELY DPSRGYLVND TVLVEAEVAV RKVLDYWSYD SKKETGFVGL
0201: KNQGATCYMN SLLQTLYHIP YFRKAVYHMP TTENDAPTAS IPLALQSLFY KLQYNDTSVA TKELTKSFGW DTYDSFMQHD VQELNRVLCE KLEDKMKGTV
0301: VEGTIQQLFE GHHMNYIECI NVDFKSTRKE SFYDLQLDVK GCKDVYASFD KYVEVERLEG DNKYHAEGHG LQDAKKGVLF IDFPPVLQLQ LKRFEYDFMR
0401: DTMVKINDRY EFPLELDLDR EDGKYLSPDA DRSVRNLYTL HSVLVHSGGV HGGHYYAFIR PTLSDQWYKF DDERVTKEDL KRALEEQYGG EEELPQTNPG
0501: FNNNPPFKFT KYSNAYMLVY IRESDKDKII CNVDEKDIAE HLRVRLKKEQ EEKEDKRRYK AQAHLYTIIK VARDEDLKEQ IGKDIYFDLV DHDKVRSFRI
0601: QKQTPFQQFK EEVAKEFGVP VQLQRFWIWA KRQNHTYRPN RPLTPQEELQ PVGQIREASN KANTAELKLF LEVEHLDLRP IPPPEKSKED ILLFFKLYDP
0701: EKAVLSYAGR LMVKSSSKPM DITGKLNEMV GFAPDEEIEL FEEIKFEPCV MCEHLDKKTS FRLCQIEDGD IICFQKPLVN KEIECLYPAV PSFLEYVQNR
0801: QLVRFRALEK PKEDEFVLEL SKQHTYDDVV EKVAEKLGLD DPSKLRLTSH NCYSQQPKPQ PIKYRGVDHL SDMLVHYNQT SDILYYEVLD IPLPELQGLK
0901: TLKVAFHHAT KEEVVIHNIR LPKQSTVGDV INELKTKVEL SHPDAELRLL EVFYHKIYKI FPSTERIENI NDQYWTLRAE EIPEEEKNIG PNDRLILVYH
1001: FAKETGQNQQ VQNFGEPFFL VIHEGETLEE IKNRIQKKLH VSDEDFAKWK FAFMSMGRPE YLQDTDVVYN RFQRRDVYGA FEQYLGLEHA DTTPKRAYAA
1101: NQNRHAYEKP VKIYN

Arabidopsis Description

UBP12Ubiquitin carboxyl-terminal hydrolase 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPT1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.