Factsheet for VIT_06s0009g00960.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0489200-01	Rice	cytosol	3.49	90.7
VIT_13s0073g00610.t01	Wine grape	cytosol	88.26	88.34
VIT_08s0032g00600.t01	Wine grape	cytosol	87.81	87.81
Os12t0489100-01	Rice	cytosol, extracellular, plasma membrane	42.83	86.75
GSMUA_Achr5P02720_001	Banana	cytosol	85.84	85.92
GSMUA_Achr10P...	Banana	cytosol	85.57	85.65
GSMUA_Achr4P28400_001	Banana	cytosol	85.22	85.29
EES15989	Sorghum	cytosol	84.77	84.31
TraesCS4D01G165800.1	Wheat	unclear	84.5	84.27
TraesCS4A01G163000.1	Wheat	cytosol	84.05	83.97
TraesCS5A01G105900.1	Wheat	cytosol	84.05	83.82
EES09985	Sorghum	cytosol	83.78	83.63
HORVU5Hr1G031980.4	Barley	cytosol	83.87	83.57
TraesCS5B01G111000.7	Wheat	cytosol	84.05	83.23
TraesCS5D01G123300.4	Wheat	cytosol	83.87	83.05
GSMUA_Achr4P22710_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	84.77	82.19
Zm00001d041035_P002	Maize	cytosol	81.27	79.63
HORVU4Hr1G034950.2	Barley	cytosol	77.96	77.82
Zm00001d023640_P004	Maize	cytosol	78.76	77.65
VIT_12s0121g00410.t01	Wine grape	cytosol	5.82	73.86
Zm00001d052943_P023	Maize	plastid	72.85	60.72
VIT_04s0008g03170.t01	Wine grape	mitochondrion	16.58	16.91
VIT_05s0020g04980.t01	Wine grape	nucleus	16.85	16.4
VIT_04s0008g05690.t01	Wine grape	nucleus	17.47	11.59
VIT_11s0016g05880.t01	Wine grape	mitochondrion	14.52	10.68

Protein Annotations

EntrezGene:100266796	wikigene:100266796	MapMan:14.6.2.3	MapMan:19.2.3.1.1.5	Gene3D:2.60.210.10	Gene3D:3.10.20.90
Gene3D:3.90.70.10	EMBL:AM469709	ProteinID:CAN68264	ProteinID:CAN68264.1	ProteinID:CBI24403	ProteinID:CBI24403.3
ncoils:Coil	UniProt:D7T1M3	EMBL:FN595504	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR002083
InterPro:IPR008974	InterPro:IPR028889	EntrezGene:LOC100266796	wikigene:LOC100266796	InterPro:MATH/TRAF_dom	PFAM:PF00443
PFAM:PF00917	PFAM:PF12436	PFAM:PF14533	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50144
PFscan:PS50235	PANTHER:PTHR24006	PANTHER:PTHR24006:SF614	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SMART:SM00061
SUPFAM:SSF49599	SUPFAM:SSF54001	TIGR:TC60414	InterPro:TRAF-like	UniParc:UPI00019837C1	InterPro:USP7_ICP0-binding_dom
InterPro:USP_C	InterPro:USP_CS	InterPro:USP_dom	ArrayExpress:VIT_06s0009g00960	EnsemblPlantsGene:VIT_06s0009g00960	EnsemblPlants:VIT_06s0009g00960.t01
unigene:Vvi.19067	RefSeq:XP_002277700	RefSeq:XP_002277700.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:+:12136251..12193003

Molecular Weight (calculated)

130943.0 Da

IEP (calculated)

5.749

GRAVY (calculated)

-0.646

Length

1116 amino acids

Sequence
(BLAST)

0001: MTVMTPASIE REDEEMLVPH TDLADGHQPM EVVAQEETTS TVENQPVEDP PTSRFTWRIE NFSRLNTKKH YSENFIVGGY KWRVLIFPKG NNVEHLSMYL
0101: DVADSSSLPY GWSRYAQFSL AVVNQIHNKY TVRKDTQHQF NARESDWGFT SFMPLSELYD PGRGFLVSDT CIVEAEVAVR RVVDYWTYDS KKETGYVGLK
0201: NQGATCYMNS LLQTLYHIPY FRKAVYHMPT TENDMPSGSI PLALQSLFYK LQYSDSSVAT KELTKSFGWD TYDSFLQHDV QELNRVLCEK LEDKMKGTVV
0301: EGTIQQLFEG HHMNYIECIN VDYKSTRKES FYDLQLDVKG CHDVYASFDK YVEVERLEGD NKYHAEHHGL QDARKGVLFI DFPPVLQLQL KRFEYDFMRD
0401: TMVKINDRYE FPLQLDLDRE NGKYLSPDAN RTVRNLYALH SVLVHSGGVH GGHYYAFIRP TLSDQWYKFD DERVTKEDVK RALEEQYGGE EELPQTNPGL
0501: NNTPFKFTKY SNAYMLVYIR ESDKDKIICN VDEKDIAEHL RERLKKEQEE KEHKKKEKAE SHLYTIIKVA RDDDLVEHIG RDIYFDLVDH DKVRSFRIQK
0601: QMPFNFFKEE VAKEFGIPIQ FQRFWLWAKR QNHTYRPNRP LTHLEEQQSV GQLREISNKV QNAELKLFLE VNLGPDLHPN PPPEKTKDDI LLFFKLYDPE
0701: KEELNYVGRL FVKSTGKPVE ILSKLNEMVG YAPDEEIELY EEIKFDPSVM CEPIDKKFTF RASQLEDGDI ICFQKTPPIE SGESFRYPDV PSFLEYVHNR
0801: QVVHFRSLEK PKEDDFCLEM SKLFTYDDVV ERVARQLGLD DPSKIRLTSH NCYSQQPKPQ PIKYRGVDHL SDMLVHYNLI SDVLYYEVLD IPLPELQGLK
0901: TLKVAFHHAE KEEVVSHSIR LPKQSTVGDV INALKTKVEL SHPNAEVRLL EVFYHKIYKV FPSNEKIENI NDQYWTLRAE EIPEEEKNLG PQDRLIHVYH
1001: FTKDTAQNQM QIQNFGEPFF LVIHEGETLA EVKVRIQKKL LVPEEEFAKW RFAFLSLGRP EYLQDSDIVS SRFQRRDVYG AWEQYLGLEH SDTAPKRAYA
1101: ANQNRHTFEK PVKIYN

Best Arabidopsis Sequence Match ( AT5G06600.2 )
(BLAST)

0001: MTMMTPPPVD PEDEEMLVPN SDLVDGPAQP MEVTQPETAA STVENQPAED PPTLKFTWTI PNFSRQNTRK HYSDVFVVGG YKWRILIFPK GNNVDHLSMY
0101: LDVSDAASLP YGWSRYAQFS LAVVNQIHTR YTVRKETQHQ FNARESDWGF TSFMPLSELY DPSRGYLVND TVLVEAEVAV RKVLDYWSYD SKKETGFVGL
0201: KNQGATCYMN SLLQTLYHIP YFRKAVYHMP TTENDAPTAS IPLALQSLFY KLQYNDTSVA TKELTKSFGW DTYDSFMQHD VQELNRVLCE KLEDKMKGTV
0301: VEGTIQQLFE GHHMNYIECI NVDFKSTRKE SFYDLQLDVK GCKDVYASFD KYVEVERLEG DNKYHAEGHG LQDAKKGVLF IDFPPVLQLQ LKRFEYDFMR
0401: DTMVKINDRY EFPLELDLDR EDGKYLSPDA DRSVRNLYTL HSVLVHSGGV HGGHYYAFIR PTLSDQWYKF DDERVTKEDL KRALEEQYGG EEELPQTNPG
0501: FNNNPPFKFT KYSNAYMLVY IRESDKDKII CNVDEKDIAE HLRVRLKKEQ EEKEDKRRYK AQAHLYTIIK VARDEDLKEQ IGKDIYFDLV DHDKVRSFRI
0601: QKQTPFQQFK EEVAKEFGVP VQLQRFWIWA KRQNHTYRPN RPLTPQEELQ PVGQIREASN KANTAELKLF LEVEHLDLRP IPPPEKSKED ILLFFKLYDP
0701: EKAVLSYAGR LMVKSSSKPM DITGKLNEMV GFAPDEEIEL FEEIKFEPCV MCEHLDKKTS FRLCQIEDGD IICFQKPLVN KEIECLYPAV PSFLEYVQNR
0801: QLVRFRALEK PKEDEFVLEL SKQHTYDDVV EKVAEKLGLD DPSKLRLTSH NCYSQQPKPQ PIKYRGVDHL SDMLVHYNQT SDILYYEVLD IPLPELQGLK
0901: TLKVAFHHAT KEEVVIHNIR LPKQSTVGDV INELKTKVEL SHPDAELRLL EVFYHKIYKI FPSTERIENI NDQYWTLRAE EIPEEEKNIG PNDRLILVYH
1001: FAKETGQNQQ VQNFGEPFFL VIHEGETLEE IKNRIQKKLH VSDEDFAKWK FAFMSMGRPE YLQDTDVVYN RFQRRDVYGA FEQYLGLEHA DTTPKRAYAA
1101: NQNRHAYEKP VKIYN

Arabidopsis Description

UBP12Ubiquitin carboxyl-terminal hydrolase 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPT1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.