Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH52412 | Soybean | nucleus | 85.32 | 85.53 |
| KRH61745 | Soybean | nucleus | 48.78 | 83.86 |
| KRH61744 | Soybean | cytosol | 31.37 | 82.37 |
| Solyc06g017970.2.1 | Tomato | nucleus | 80.04 | 79.66 |
| AT2G25330.1 | Thale cress | nucleus | 30.66 | 74.46 |
| CDY11532 | Canola | nucleus, plastid | 72.19 | 73.55 |
| AT2G25320.3 | Thale cress | nucleus, plastid | 72.91 | 73.3 |
| Bra007802.1-P | Field mustard | nucleus, plastid | 72.43 | 73.26 |
| CDY58924 | Canola | nucleus, plastid | 71.9 | 73.16 |
| CDX76975 | Canola | nucleus, plastid | 70.83 | 72.82 |
| Bra034251.1-P | Field mustard | nucleus | 70.59 | 72.13 |
| CDY35362 | Canola | nucleus, plastid | 70.47 | 72.01 |
| GSMUA_Achr5P23550_001 | Banana | plastid | 54.72 | 70.09 |
| GSMUA_Achr6P03030_001 | Banana | cytosol, nucleus, plastid | 34.4 | 68.85 |
| Os02t0613400-01 | Rice | extracellular | 11.94 | 68.14 |
| GSMUA_Achr6P03040_001 | Banana | nucleus | 16.99 | 63.13 |
| EES07147 | Sorghum | nucleus, plastid | 61.73 | 62.4 |
| TraesCS6A01G230500.1 | Wheat | nucleus, plastid | 61.32 | 62.28 |
| TraesCS6B01G251400.1 | Wheat | nucleus, plastid | 61.26 | 62.03 |
| TraesCS6D01G204500.1 | Wheat | nucleus, plastid | 61.2 | 61.97 |
| HORVU0Hr1G016000.5 | Barley | nucleus | 60.9 | 61.3 |
| Zm00001d051075_P002 | Maize | nucleus | 60.67 | 60.31 |
| VIT_11s0016g05880.t01 | Wine grape | mitochondrion | 52.17 | 57.88 |
| VIT_12s0121g00410.t01 | Wine grape | cytosol | 1.37 | 26.14 |
| VIT_08s0032g00600.t01 | Wine grape | cytosol | 12.36 | 18.64 |
| VIT_13s0073g00610.t01 | Wine grape | cytosol | 12.06 | 18.21 |
| VIT_06s0009g00960.t01 | Wine grape | cytosol | 11.59 | 17.47 |
| VIT_05s0020g04980.t01 | Wine grape | nucleus | 8.14 | 11.95 |
| VIT_04s0008g03170.t01 | Wine grape | mitochondrion | 7.13 | 10.97 |
Protein Annotations
| EntrezGene:100259525 | wikigene:100259525 | Gene3D:2.60.210.10 | MapMan:35.1 | EMBL:AM472501 | ProteinID:CAN79352 |
| ProteinID:CAN79352.1 | ProteinID:CBI21062 | ProteinID:CBI21062.3 | ncoils:Coil | UniProt:D7SUW3 | InterPro:FANCD2 |
| EMBL:FN595231 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006281 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR002083 |
| InterPro:IPR008974 | EntrezGene:LOC100259525 | wikigene:LOC100259525 | InterPro:MATH/TRAF_dom | PFAM:PD936484 | PFAM:PF00917 |
| PFAM:PF14631 | PFscan:PS50144 | PANTHER:PTHR24007 | PANTHER:PTHR24007:SF6 | SMART:SM00061 | SUPFAM:SSF49599 |
| TIGR:TC55800 | InterPro:TRAF-like | UniParc:UPI00015C8662 | ArrayExpress:VIT_04s0008g05690 | EnsemblPlantsGene:VIT_04s0008g05690 | EnsemblPlants:VIT_04s0008g05690.t01 |
| RefSeq:XP_002282789 | RefSeq:XP_002282789.2 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr4:+:5180570..5200523
Molecular Weight (calculated)
187985.0 Da
IEP (calculated)
5.267
GRAVY (calculated)
-0.399
Length
1683 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKQHHTSSEA VSSSSTISSS TVPSSSEQSQ PPIATPSPSP SMGDDPSLAA SRDGHGQESV TVDRRTDFSA VCKWTVHNFP KIKARALWSK YFEVGGFDCR
0101: LLIYPKGDSQ ALPGYISVYL QIMDPRGSSS SKWDCFASYR LAIVNHADDS KSIHRDSWHR FSSKKKSHGW CDFTPSTTLF DSKSGYLFNN DSVLITADIL
0201: ILNESVNFTR DNNELQSASS MASMVVAGPV SDVLSGKFTW KVHNFSLFKE MIKTQKIMSP VFPAGECNLR ISVYQSSVNG VEYLSMCLES KDTEKAVVSD
0301: RSCWCLFRMS VLNQKPGLNH MHRDSYGRFA ADNKSGDNTS LGWNDYMKMS DFIGSDSGFL VDDTAVFSTS FHVIKEFSSF SKNGGLIGVR GGSGGTRKSD
0401: GHLGKFTWRI ENFTRLKDLL KKRKITGLCI KSRRFQIGNR DCRLIVYPRG QSQPPCHLSV FLEVTDSRNT SSDWSCFVSH RLSVVNQRME DKSVTKESQN
0501: RYSKAAKDWG WREFVTLTSL FDQDSGFLVQ DTVVFSAEVL ILKETSTMLD LTDQDSESSN SGSQIDKIGK RSSFTWRVEN FMSFKEIMET RKIFSKFFQA
0601: GGCELRIGVY ESFDTICIYL ESDQSVGSDP DKNFWVRYRM AVVNQKNPAK TVWKESSICT KTWNNSVLQF MKVSDMLEAD AGFLVRDTVV FVCEILDCCP
0701: WFEFSDLEVL ASEDDQDALT TDPDELIDSE DSEGISGDEE DIFRNLLSRA GFHLTYGDNP AQPQVTLREK LLMDAGAIAG FLTGLRVYLD DPAKVKRLLL
0801: PTKLSGSNDG KKVTKTDESS PSLMNLLMGV KVLQQAIIDL LLDIMVECCQ PSEGNSNDDS SDENSKLSPG GSGAVSPLES DRENGATESA EFPVYERLDS
0901: GVYESTNVSA VQSSDMNGTV VPEKAVPGQP ISPPETSAGG SIENASLRSK TKWPEQSEEL LGLIVNSLRA LDGAVPQGCP EPRRRPQSAQ KIALVLDKAP
1001: KHLQPDLVAL VPKLVEHSEH PLAACALLDR LQKPDAEPAL RIPVFGALSQ LECGSEVWER ILFQSFELLS DSNDEPLAAT INFIFKAASQ CQHLPEAVRS
1101: IRVKLKHLGA EVSPCVLDFL NKTVNSWGDV AETILRDIDC DDDFGDNCST IPCGLFLFGE NGPTSERLHA IDEQAFCATR HFSDIYLLIE MLSIPCLAVE
1201: ASQTFERAVA RGAFVAQSVA MVLESRLAQR LNFNSRFVAE SFQHTDVVVE GETNEQLRAQ RDDFSSVLGL AETLALSRDP RVKGFVKVLY TILFKWYADE
1301: SYRGRMLKRL VDRATSTTDS SREIDLELEI LVILVCEEQE IVRPVLSMMR EVAELANVDR AALWHQLCTS EDEIIRMREE RKAEISNLVK EKAIISQRLS
1401: ESEATSNRLK SEMRAEADRF AREKKELSEQ IQEVESQLEW LRSERDEEIT KLTSEKKVLQ DRLHDAEAQL SQLKSRKRDE LKRVVKEKNA LAERLKSAEA
1501: ARKRFDEELK RYATENVTRE EIRQSLEDEV RRLTQTVGQT EGEKREKEEQ VARCEAYIDG MESKLQACQQ YIHTLEASLQ EEMSRHAPLY GAGLEALSMK
1601: ELETLARIHE EGLRQIHAIQ QHKGSPAGSP LVSPHTLQHS HGLYPPAPPP MAVGLPPSLI PNGVGIHSNG HVNGAVGSWF NHN
0101: LLIYPKGDSQ ALPGYISVYL QIMDPRGSSS SKWDCFASYR LAIVNHADDS KSIHRDSWHR FSSKKKSHGW CDFTPSTTLF DSKSGYLFNN DSVLITADIL
0201: ILNESVNFTR DNNELQSASS MASMVVAGPV SDVLSGKFTW KVHNFSLFKE MIKTQKIMSP VFPAGECNLR ISVYQSSVNG VEYLSMCLES KDTEKAVVSD
0301: RSCWCLFRMS VLNQKPGLNH MHRDSYGRFA ADNKSGDNTS LGWNDYMKMS DFIGSDSGFL VDDTAVFSTS FHVIKEFSSF SKNGGLIGVR GGSGGTRKSD
0401: GHLGKFTWRI ENFTRLKDLL KKRKITGLCI KSRRFQIGNR DCRLIVYPRG QSQPPCHLSV FLEVTDSRNT SSDWSCFVSH RLSVVNQRME DKSVTKESQN
0501: RYSKAAKDWG WREFVTLTSL FDQDSGFLVQ DTVVFSAEVL ILKETSTMLD LTDQDSESSN SGSQIDKIGK RSSFTWRVEN FMSFKEIMET RKIFSKFFQA
0601: GGCELRIGVY ESFDTICIYL ESDQSVGSDP DKNFWVRYRM AVVNQKNPAK TVWKESSICT KTWNNSVLQF MKVSDMLEAD AGFLVRDTVV FVCEILDCCP
0701: WFEFSDLEVL ASEDDQDALT TDPDELIDSE DSEGISGDEE DIFRNLLSRA GFHLTYGDNP AQPQVTLREK LLMDAGAIAG FLTGLRVYLD DPAKVKRLLL
0801: PTKLSGSNDG KKVTKTDESS PSLMNLLMGV KVLQQAIIDL LLDIMVECCQ PSEGNSNDDS SDENSKLSPG GSGAVSPLES DRENGATESA EFPVYERLDS
0901: GVYESTNVSA VQSSDMNGTV VPEKAVPGQP ISPPETSAGG SIENASLRSK TKWPEQSEEL LGLIVNSLRA LDGAVPQGCP EPRRRPQSAQ KIALVLDKAP
1001: KHLQPDLVAL VPKLVEHSEH PLAACALLDR LQKPDAEPAL RIPVFGALSQ LECGSEVWER ILFQSFELLS DSNDEPLAAT INFIFKAASQ CQHLPEAVRS
1101: IRVKLKHLGA EVSPCVLDFL NKTVNSWGDV AETILRDIDC DDDFGDNCST IPCGLFLFGE NGPTSERLHA IDEQAFCATR HFSDIYLLIE MLSIPCLAVE
1201: ASQTFERAVA RGAFVAQSVA MVLESRLAQR LNFNSRFVAE SFQHTDVVVE GETNEQLRAQ RDDFSSVLGL AETLALSRDP RVKGFVKVLY TILFKWYADE
1301: SYRGRMLKRL VDRATSTTDS SREIDLELEI LVILVCEEQE IVRPVLSMMR EVAELANVDR AALWHQLCTS EDEIIRMREE RKAEISNLVK EKAIISQRLS
1401: ESEATSNRLK SEMRAEADRF AREKKELSEQ IQEVESQLEW LRSERDEEIT KLTSEKKVLQ DRLHDAEAQL SQLKSRKRDE LKRVVKEKNA LAERLKSAEA
1501: ARKRFDEELK RYATENVTRE EIRQSLEDEV RRLTQTVGQT EGEKREKEEQ VARCEAYIDG MESKLQACQQ YIHTLEASLQ EEMSRHAPLY GAGLEALSMK
1601: ELETLARIHE EGLRQIHAIQ QHKGSPAGSP LVSPHTLQHS HGLYPPAPPP MAVGLPPSLI PNGVGIHSNG HVNGAVGSWF NHN
0001: MMKQSSSEAV SSSSSSAAAD QSHPSVSSSS SEKPLSSSSI SPAEDLQVGS SRDGSGGAQE IVAVDRPGEY SALCRWTVES FTRVKAKALW SKYFDVGGYD
0101: CRLLVYPRGD SQALPGYISI YLQIMDPRGT TSSRWDCFAS YRLSIVNLVD DSLTIHKDSW HRFSSKKKSH GWCDFTLNSS ILDPKMGFLF NNDSLLITAD
0201: ILILNESVSF SRDNNNEGQS LYKENSIAGP MPDVLSGKFT WKVNNFSLFK DMIKTQKIMS PVFPAGECNL RISVYQSVVN SQEYISMCLE SKETEKTLVS
0301: DRSCWCLFRM SALNQKPGCT HMHRDSYGRF AADNKSGDNT SLGWNDYMKM SEFVNPEAGF LLDDMAVFST SFHVIKEFSS FTKNGGLIGG RNGAGARKSD
0401: GHMGKFTWRI ENFTRLKDLL KKRKITGLCI KSKRFQIGNR DCRLIVYPRG QSQPPCHLSV FLEVTDSRSS SDWSCFVSHR LSVVNQRLEE KSVTKESQNR
0501: YSKAAKDWGW REFVTLTSLF DQDSGFLVQD TVVFSAEVLI LKETSATKEY VEADSTNSVS PTDNSVKKSS FTWKVENFLA FKEIMETRKI FSKFFQAGGC
0601: ELRIGVYESF DTICIYLESD QSAGTDVDNN FWVKYKMGIL NQKNPAKSVW KESSICTKTW NNSVLQFMKV SDMLEADAGF LVRDTVVFVC EILDCCPWFE
0701: FSDLEVLASD DDQDALTTDP DEIIDSEESE GISGDEEDTF RDFLSRAGFH LTFGENPSQP QVTLREKLLM DAGAIAGFLT GLRVYLDDPT KVKRLLLPTK
0801: ISCNDRSKLI KSDESSPSLM NLLMGVKVLQ QAIIDLLLDI MVECCQPSEE GSHSEPSLLS PKTDGCVAAT SSESTRERGA AEPSQHLVDE RFKSDTDATL
0901: STSAVPSSEM NGIDLLEKAL AIEPMSPPTT SAGQSSDASV QSKTKWPEQS EELLGLIVNS LKTLDAAVPQ GCPEPRRRPH SAQKIALVLD RAPKHLQPDL
1001: VSLVPKLVEH SEHPLAALAL IERLQKPEAE PALREPVYNA LSQLECDSEV WEDILSQSFE LLSDLNEESL VAAIHFTFKT ASQCQHLPEA VNAVRERLKS
1101: LGADVSLCVL DYLSKTVHSW PGIAEMILRD INTDDSVGAN FATLPCGPFL IGENETASEM ADLMEEHIFY ANRQFFDVYI LLEMLSISCL AEEASQTFER
1201: AVARGAIVAQ AVAMVLEKQR VQSPNLNATS GDASLKHQDP VLEGEASEQP ATGGTEFRII LNLAETLTHS RDPQVRGFVK MLYTILFKWF PDQPFRVQIL
1301: RRLVDRFTSP TSSSHDLDLE LEILAILIFQ EQEVARPVLA MLKKVVEHAN IDRAALWHQL RANKEELVRL KEEKKIEIQS MTKEKSSITQ KLSESEAANT
1401: RLKSEMKAEA DRFSREKKDL VEQFRDVESQ LEWIRSERQD EIDKLSSEKK TLLDRLHEAE TQLALQKTRK RDELKKVGKE KNALTEKLKV TEAARKRFEE
1501: ELKRYATENV TREELRKSLE DQIRQLTQTV GQTKEEKREK EDQIARCEAY IDGMESKLQA CQQYIHTLES SLREEISRHA PLYGANLESL SMKELDTIAR
1601: IHEEGLRQIH ALQQRKGHTL SHGLPQGHTL YPTTPPQLPP MAIGLPPQLI PNGSGVHSNG HINGSVRPWF SHHT
0101: CRLLVYPRGD SQALPGYISI YLQIMDPRGT TSSRWDCFAS YRLSIVNLVD DSLTIHKDSW HRFSSKKKSH GWCDFTLNSS ILDPKMGFLF NNDSLLITAD
0201: ILILNESVSF SRDNNNEGQS LYKENSIAGP MPDVLSGKFT WKVNNFSLFK DMIKTQKIMS PVFPAGECNL RISVYQSVVN SQEYISMCLE SKETEKTLVS
0301: DRSCWCLFRM SALNQKPGCT HMHRDSYGRF AADNKSGDNT SLGWNDYMKM SEFVNPEAGF LLDDMAVFST SFHVIKEFSS FTKNGGLIGG RNGAGARKSD
0401: GHMGKFTWRI ENFTRLKDLL KKRKITGLCI KSKRFQIGNR DCRLIVYPRG QSQPPCHLSV FLEVTDSRSS SDWSCFVSHR LSVVNQRLEE KSVTKESQNR
0501: YSKAAKDWGW REFVTLTSLF DQDSGFLVQD TVVFSAEVLI LKETSATKEY VEADSTNSVS PTDNSVKKSS FTWKVENFLA FKEIMETRKI FSKFFQAGGC
0601: ELRIGVYESF DTICIYLESD QSAGTDVDNN FWVKYKMGIL NQKNPAKSVW KESSICTKTW NNSVLQFMKV SDMLEADAGF LVRDTVVFVC EILDCCPWFE
0701: FSDLEVLASD DDQDALTTDP DEIIDSEESE GISGDEEDTF RDFLSRAGFH LTFGENPSQP QVTLREKLLM DAGAIAGFLT GLRVYLDDPT KVKRLLLPTK
0801: ISCNDRSKLI KSDESSPSLM NLLMGVKVLQ QAIIDLLLDI MVECCQPSEE GSHSEPSLLS PKTDGCVAAT SSESTRERGA AEPSQHLVDE RFKSDTDATL
0901: STSAVPSSEM NGIDLLEKAL AIEPMSPPTT SAGQSSDASV QSKTKWPEQS EELLGLIVNS LKTLDAAVPQ GCPEPRRRPH SAQKIALVLD RAPKHLQPDL
1001: VSLVPKLVEH SEHPLAALAL IERLQKPEAE PALREPVYNA LSQLECDSEV WEDILSQSFE LLSDLNEESL VAAIHFTFKT ASQCQHLPEA VNAVRERLKS
1101: LGADVSLCVL DYLSKTVHSW PGIAEMILRD INTDDSVGAN FATLPCGPFL IGENETASEM ADLMEEHIFY ANRQFFDVYI LLEMLSISCL AEEASQTFER
1201: AVARGAIVAQ AVAMVLEKQR VQSPNLNATS GDASLKHQDP VLEGEASEQP ATGGTEFRII LNLAETLTHS RDPQVRGFVK MLYTILFKWF PDQPFRVQIL
1301: RRLVDRFTSP TSSSHDLDLE LEILAILIFQ EQEVARPVLA MLKKVVEHAN IDRAALWHQL RANKEELVRL KEEKKIEIQS MTKEKSSITQ KLSESEAANT
1401: RLKSEMKAEA DRFSREKKDL VEQFRDVESQ LEWIRSERQD EIDKLSSEKK TLLDRLHEAE TQLALQKTRK RDELKKVGKE KNALTEKLKV TEAARKRFEE
1501: ELKRYATENV TREELRKSLE DQIRQLTQTV GQTKEEKREK EDQIARCEAY IDGMESKLQA CQQYIHTLES SLREEISRHA PLYGANLESL SMKELDTIAR
1601: IHEEGLRQIH ALQQRKGHTL SHGLPQGHTL YPTTPPQLPP MAIGLPPQLI PNGSGVHSNG HINGSVRPWF SHHT
Arabidopsis Description
TRAF-like family protein [Source:TAIR;Acc:AT2G25320]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.