Factsheet for VIT_04s0008g03170.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0192800-01	Rice	nucleus	20.93	73.63
Os03t0192900-01	Rice	cytosol, nucleus	5.94	73.03
PGSC0003DMT400047482	Potato	nucleus	35.19	68.75
KRH16103	Soybean	nucleus	67.09	67.96
KRH61900	Soybean	cytosol, mitochondrion, nucleus	67.64	67.52
Solyc03g078390.2.1	Tomato	nucleus	66.64	66.82
KRH04994	Soybean	nucleus	65.54	66.33
KRH52561	Soybean	cytosol	67.46	66.07
PGSC0003DMT400047483	Potato	nucleus	34.1	63.44
GSMUA_Achr11P...	Banana	nucleus	62.98	63.1
AT3G49600.1	Thale cress	cytosol	61.43	62.98
CDY00212	Canola	cytosol	58.68	62.57
Bra019603.1-P	Field mustard	cytosol	58.59	62.48
CDY05943	Canola	cytosol	59.23	62.31
OQU79121	Sorghum	nucleus	57.5	62.15
Bra017972.1-P	Field mustard	cytosol	59.05	62.12
CDY08151	Canola	cytosol	59.05	62.12
Zm00001d020157_P011	Maize	cytosol, mitochondrion, nucleus	60.79	61.07
TraesCS4A01G038800.2	Wheat	mitochondrion, nucleus	59.69	60.8
TraesCS4D01G266600.2	Wheat	mitochondrion, nucleus	59.6	60.71
TraesCS4B01G267000.2	Wheat	mitochondrion, nucleus	59.32	60.43
Zm00001d028177_P004	Maize	cytosol	58.96	60.11
HORVU4Hr1G071690.9	Barley	nucleus	49.09	58.95
CDX86966	Canola	cytosol	35.65	52.99
VIT_13s0073g00610.t01	Wine grape	cytosol	17.28	16.95
VIT_08s0032g00600.t01	Wine grape	cytosol	17.18	16.85
VIT_06s0009g00960.t01	Wine grape	cytosol	16.91	16.58
VIT_05s0020g04980.t01	Wine grape	nucleus	8.32	7.94
VIT_04s0008g05690.t01	Wine grape	nucleus	10.97	7.13
VIT_11s0016g05880.t01	Wine grape	mitochondrion	8.87	6.39
VIT_12s0121g00410.t01	Wine grape	cytosol	0.46	5.68

Protein Annotations

EntrezGene:100259355	wikigene:100259355	MapMan:19.2.3.1.1.12	Gene3D:3.10.20.90	Gene3D:3.90.70.10	MEROPS:C19.068
ProteinID:CCB46688	ProteinID:CCB46688.1	ncoils:Coil	InterPro:DUSP-like_sf	UniProt:F6H2X7	EMBL:FN595231
GO:GO:0003674	GO:GO:0003824	GO:GO:0004843	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538
GO:GO:0036459	InterPro:IPR006615	InterPro:IPR028889	EntrezGene:LOC100259355	wikigene:LOC100259355	PFAM:PF00443
ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50235	PFscan:PS51283	PANTHER:PTHR45185	InterPro:Papain_like_cys_pep_sf
InterPro:Pept_C19_DUSP	InterPro:Peptidase_C19_UCH	SMART:SM00695	SUPFAM:SSF143791	SUPFAM:SSF54001	SUPFAM:SSF54236
TIGR:TC54424	UniParc:UPI00015C8653	InterPro:USP48	InterPro:USP_CS	InterPro:USP_dom	InterPro:Ubiquitin-like_domsf
ArrayExpress:VIT_04s0008g03170	EnsemblPlantsGene:VIT_04s0008g03170	EnsemblPlants:VIT_04s0008g03170.t01	unigene:Vvi.10874	RefSeq:XP_002283635	RefSeq:XP_002283635.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:2618678..2635890

Molecular Weight (calculated)

122746.0 Da

IEP (calculated)

5.846

GRAVY (calculated)

-0.410

Length

1094 amino acids

Sequence
(BLAST)

0001: MSRPSTRSSK NKRHRADDNA ATTCQIYRKI HSTGEVTKDD ANQLYMIWKP ICQGCRVNTK DNPNCFCGLI PPPNGSRKSG LWQKMSDVVL ALGPDPFKDL
0101: RASSEYSPAG LTNLGATCYA NSILQCLYMN KTFRRGLFSV EPGLLKQYPV LDQLARLFAQ LHASKLAFID SAPFIKTLEL DNGVQQDSHE FLTLLLSLLE
0201: RCLSHSQVSR ARTIVQDLFR GSVSHVTTCS KCGKDSEASS NMEDFYELEL NVKGLKSLDE SLNDYLSVEE LHGDNQYFCE SCGTRVDATR SIKLRTLPYV
0301: LNFQLKRCVF LPKTTTKKKI TSAFCFPGEL DMRERLSEPS DLELIYDLSA VLIHKGTTVN SGHYIAHIKD ENTGQWWEFD DEHVSNLGHH PFGEGSSSSA
0401: AKPVQTEPSV HLSSTEPMNG VINGNHINIG QLQSSECSIV SGSQTYSSGD AYMLMYNLRR TTKSGEVRQT VSGANHMEIE GDIIYSDNDA ALPAHLYEEI
0501: KELNASYLDA CQQYKSKKER ELDCITERRQ EVRSVLSEGP VLSLEDPYFW ISTDWLRLWA DNITPPVLDN TPIQCLHGKV PVSKVGSMKR LSSKAWNMLF
0601: SKYGGGPALS NDDYCINCLV EGASTMVSAD NYRDRRKVMK ELADAVHSGK CLDGNLYYVS KSWFQQWARR KIIDSPCDAD AGPTASIRCP HGKLMPEQAP
0701: GAKRLLVPEN LWLFFCESAN TVKPDDTLGC SVFPSDVEPC ATCSMELTEV ASIEDTLREF KLKQRQNHEK IALGKGFALS SHCKYYLLPS SWLSTWRSYI
0801: NANGKNVSSS VQPEMLDSVI DMMKCGKHSR LLERPLELIC KRGTIFQRFS ATDGLTIITK DDWKFFCEEW GCTEEMGISA EIEFSNCVAN NLAGSCEEMP
0901: IIEEHMSPHD EVNEEIESRQ PVIKTSPEVC EVCIGERESC ELMQKLNYCN EDIRVCFVRG KEAPKSILEA SGTISEPDRR ISKRSRKTNF GNSINLKVSG
1001: STSIYQLKMM IWESFGVIKE NQILHKGSTV IDGETSTLAD MNIFPGDLLW VKDSEIHEYR DIADELSDHK MEVQQAEEGF RGTLLTSNIS SQVV

Best Arabidopsis Sequence Match ( AT3G49600.1 )
(BLAST)

0001: MSRPNTRNKN KRQRPDAVDS SSQILRKIHE ANDVTDDDIN QLFMIWKPVC QGCRVNTRDN PNCFCGLVPP LNGSRKSGLW QKTSEIIQSL GPDPTLDRRD
0101: SESTPAGLTN LGATCYANSI LQCLYMNTAF REGVFSVEVH VLKQNPVLDQ IARLFAQLHA SQKSFVDSDA FVKTLELDNG VQQDTHEFLT LLLSLLERCL
0201: LHSGVKAKTI VQDLFSGSVS HVTTCSKCGR DSEASSKMED FYALELNVKG LKSLDASLND YLSLEQLNGD NQYFCGSCNA RVDATRCIKL RTLPPVITFQ
0301: LKRCIFLPKT TAKKKITSSF SFPQVLDMGS RLAESSQNKL TYDLSAVLIH KGSAVNSGHY VAHIKDEKTG LWWEFDDEHV SELGKRPCNE ASSSTPQSES
0401: NGTASSGNIT DGIQSGSSDC RSAIKSEVFS SSDAYMLMYS LRCDKQENQE GQKENPIDIT KGEVKQLKGG YLPKHLSEWI NNMNAVFLES CKQYNLRKEK
0501: ELNALTERRQ EVRTILSEAA VQSLEEQYFW ISTDWLRLWA DTTLPPALDN TPLLCSHGKV HASKVNCMKR ISELAWIKLE SKFNGGPKLG KGDYCRDCLM
0601: DGARMVVSSD SYRDRRTFMK SIANDVLSGK CEDGMYYISR AWLQQWIKRK NLDAPTEADA GPTNAITCNH GELMPEQAPG AKRVVVPENF WSFLFEDALK
0701: VMSEDTLDCT CFPVDSSQCC HCTEVLSEVA CFEDSLRTLK VKQRQNHEKL ATGKGIPLTP QSRYFLLPSP WLVQWRIYIN MTGKNSSSAP EPERLDGVIN
0801: TLKCKKHTRL LERLPELVCR RGSYFQKNPS TDKLTIIPEL DWKYFCDEWG GLMENGISAF IEVGNTDQSS SPDVIDLEKD SSPDDNMDVD AQQLILRASP
0901: EICEECIGER ESCELMQKLS YSEGDVFVCF VRGKEAPKAM LEASDSSFEV DRRTSKRSRR TNYGNLTSLK VSATTTVYQL KMMIWELLGV MKENQELHKG
1001: SKVIDQESAT LADMNIFPGD RLWVRDTEMH EHRDIADELC EKKPGAQDIE EGFRGTLLTG NISSEAC

Arabidopsis Description

UBP26Ubiquitin carboxyl-terminal hydrolase 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.