Factsheet for VIT_08s0032g00600.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0073g00610.t01	Wine grape	cytosol	89.34	89.42
VIT_06s0009g00960.t01	Wine grape	cytosol	87.81	87.81
CDX70087	Canola	cytosol	87.19	87.19
CDY55765	Canola	cytosol	86.74	86.82
Bra009210.1-P	Field mustard	cytosol	85.48	86.73
CDX98939	Canola	cytosol	86.65	86.65
Bra005900.1-P	Field mustard	cytosol	86.56	86.64
CDY04994	Canola	cytosol	86.47	86.47
AT5G06600.1	Thale cress	cytosol	86.38	86.38
CDY14077	Canola	cytosol	86.38	86.38
PGSC0003DMT400072539	Potato	cytosol	86.74	86.27
Solyc10g081610.1.1	Tomato	cytosol, extracellular, nucleus	86.29	85.83
AT3G11910.1	Thale cress	cytosol	85.57	85.65
CDX81009	Canola	cytosol	85.13	84.97
Bra028727.1-P	Field mustard	cytosol	86.29	84.62
Bra038685.1-P	Field mustard	cytosol	82.71	83.76
CDY01069	Canola	cytosol	83.42	83.5
Bra034802.1-P	Field mustard	cytosol	83.06	83.14
CDY08485	Canola	cytosol	61.29	82.61
CDY53923	Canola	cytosol	81.72	82.09
Bra001426.1-P	Field mustard	cytosol	81.45	81.74
CDX73847	Canola	cytosol	79.84	81.22
Os07t0163800-01	Rice	cytosol, plasma membrane	20.79	78.91
VIT_12s0121g00410.t01	Wine grape	cytosol	5.65	71.59
CDY72484	Canola	cytosol	9.86	67.07
CDX72290	Canola	cytosol, mitochondrion, plastid	10.93	67.03
TraesCS3A01G176700.1	Wheat	cytosol	5.73	32.82
VIT_04s0008g03170.t01	Wine grape	mitochondrion	16.85	17.18
VIT_05s0020g04980.t01	Wine grape	nucleus	16.94	16.49
VIT_04s0008g05690.t01	Wine grape	nucleus	18.64	12.36
VIT_11s0016g05880.t01	Wine grape	mitochondrion	14.87	10.94

Protein Annotations

EntrezGene:100244518	wikigene:100244518	MapMan:14.6.2.3	MapMan:19.2.3.1.1.5	Gene3D:2.60.210.10	Gene3D:3.10.20.90
Gene3D:3.90.70.10	ProteinID:CBI39086	ProteinID:CBI39086.3	ncoils:Coil	UniProt:D7U8M2	EMBL:FN596742
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	InterPro:IPR002083	InterPro:IPR008974	InterPro:IPR028889	EntrezGene:LOC100244518
wikigene:LOC100244518	InterPro:MATH/TRAF_dom	PFAM:PF00443	PFAM:PF00917	PFAM:PF12436	PFAM:PF14533
ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50144	PFscan:PS50235	PANTHER:PTHR24006	PANTHER:PTHR24006:SF565
InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SMART:SM00061	SUPFAM:SSF49599	SUPFAM:SSF54001	TIGR:TC65856
TIGR:TC67684	InterPro:TRAF-like	UniParc:UPI0001BE4C84	InterPro:USP7_ICP0-binding_dom	InterPro:USP_C	InterPro:USP_CS
InterPro:USP_dom	ArrayExpress:VIT_08s0032g00600	EnsemblPlantsGene:VIT_08s0032g00600	EnsemblPlants:VIT_08s0032g00600.t01	unigene:Vvi.14389	RefSeq:XP_002267555
RefSeq:XP_002267555.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:+:3937004..3969364

Molecular Weight (calculated)

131024.0 Da

IEP (calculated)

5.687

GRAVY (calculated)

-0.655

Length

1116 amino acids

Sequence
(BLAST)

0001: MTLMTPAPLD QQEDEEMLVP HSDLVEGPQP MEVVAQADAS SAVENQPVED PQTSRFTWTI ENFSRLNTKK HYSEIFVVGG FKWRVLIFPK GNNVDHLSMY
0101: LDVADSATLP YGWSRYAQFS LSVVNQIHNK YSIRKDTQHQ FNARESDWGF TSFMPLSDLY DPGRGYLVND TCIIEAEVAV RKILDYWTYD SKKETGFVGL
0201: KNQGATCYMN SLLQTLYHIP YFRKAVYHMP TTENDMPSGS IPLALQSLFY KLQYNDNSVA TKELTKSFGW DTYDSFMQHD VQELNRVLCE KLEDKMKGTV
0301: VEGTIQQLFE GHHMNYIECI NVDYKSTRKE SFYDLQLDVK GCRDVYASFD KYVEVERLEG DNRYQAENHG LQDAKKGVLF IDFPPVLQLQ LKRFEYDFMR
0401: DTMVKINDRY EFPLQLDLDR ENGKYLSPDA DRSVRNLYTL HSVLVHSGGV HGGHYYAFIR PTLSDQWFKF DDERVTKEDT RRALEEQYGG EEELPQTNPG
0501: FNNTPFKFTK YSNAYMLVYI RESDKEKIIC NVDEKDIAEH LRIRLKKEQE EKEDKRKYKA QAHLFTIIKV ARDEDLAEQI GKDIYFDLVD HDKVRSFRIQ
0601: KQWPFTLFKE EVAKEFGIPV QYQRFWIWAK RQNHTYRPNR PLTPQEEAQS VGQLREVSTK VNNAELKLFL EVELGPDLRP IPPPEKTKED ILLFFKLYDP
0701: EKEELRYVGR LFVKSSGKPI EILTKLNEMA GFAPDEEIEL YEEIKFEPCV MCEHLAKRTS FRFSQIEDGD IICFQKSAPP ESEEQCRYSD VTSFLEYVQN
0801: RQVVHFRALE RPKEDDFCLE LSKLHNYDDV VERVARRLGL DDPSKIRLTS HNCYSQQPKP QPIKYRGVEH LSDMLVHYNQ SSDILYYEVL DIPLPELQGL
0901: KNLKVAFHHA TKDDVIIHNI RLPKQSTVGD VINELKTKVE LSHPNAELRL LEVFYHKIYK IFPPSEKIEN INDQYWTLRA EEAKEEKNLG PHDRLIHVYH
1001: FTKETVQNQM QVQNFGEPFF LIIHEGETLA EVKERIQKKL QVPDEEFSKW KFAFLSLGRP EYLQDSDIVS SRFQRRDVYG AWEQYLGLEH SDTAPKRAYA
1101: ANQNRHTFEK PVKIYN

Best Arabidopsis Sequence Match ( AT5G06600.1 )
(BLAST)

0001: MTMMTPPPVD QPEDEEMLVP NSDLVDGPAQ PMEVTQPETA ASTVENQPAE DPPTLKFTWT IPNFSRQNTR KHYSDVFVVG GYKWRILIFP KGNNVDHLSM
0101: YLDVSDAASL PYGWSRYAQF SLAVVNQIHT RYTVRKETQH QFNARESDWG FTSFMPLSEL YDPSRGYLVN DTVLVEAEVA VRKVLDYWSY DSKKETGFVG
0201: LKNQGATCYM NSLLQTLYHI PYFRKAVYHM PTTENDAPTA SIPLALQSLF YKLQYNDTSV ATKELTKSFG WDTYDSFMQH DVQELNRVLC EKLEDKMKGT
0301: VVEGTIQQLF EGHHMNYIEC INVDFKSTRK ESFYDLQLDV KGCKDVYASF DKYVEVERLE GDNKYHAEGH GLQDAKKGVL FIDFPPVLQL QLKRFEYDFM
0401: RDTMVKINDR YEFPLELDLD REDGKYLSPD ADRSVRNLYT LHSVLVHSGG VHGGHYYAFI RPTLSDQWYK FDDERVTKED LKRALEEQYG GEEELPQTNP
0501: GFNNNPPFKF TKYSNAYMLV YIRESDKDKI ICNVDEKDIA EHLRVRLKKE QEEKEDKRRY KAQAHLYTII KVARDEDLKE QIGKDIYFDL VDHDKVRSFR
0601: IQKQTPFQQF KEEVAKEFGV PVQLQRFWIW AKRQNHTYRP NRPLTPQEEL QPVGQIREAS NKANTAELKL FLEVEHLDLR PIPPPEKSKE DILLFFKLYD
0701: PEKAVLSYAG RLMVKSSSKP MDITGKLNEM VGFAPDEEIE LFEEIKFEPC VMCEHLDKKT SFRLCQIEDG DIICFQKPLV NKEIECLYPA VPSFLEYVQN
0801: RQLVRFRALE KPKEDEFVLE LSKQHTYDDV VEKVAEKLGL DDPSKLRLTS HNCYSQQPKP QPIKYRGVDH LSDMLVHYNQ TSDILYYEVL DIPLPELQGL
0901: KTLKVAFHHA TKEEVVIHNI RLPKQSTVGD VINELKTKVE LSHPDAELRL LEVFYHKIYK IFPSTERIEN INDQYWTLRA EEIPEEEKNI GPNDRLILVY
1001: HFAKETGQNQ QVQNFGEPFF LVIHEGETLE EIKNRIQKKL HVSDEDFAKW KFAFMSMGRP EYLQDTDVVY NRFQRRDVYG AFEQYLGLEH ADTTPKRAYA
1101: ANQNRHAYEK PVKIYN

Arabidopsis Description

UBP12Ubiquitin carboxyl-terminal hydrolase 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPT1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.