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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX70087 Canola cytosol 95.7 95.7
CDY55765 Canola cytosol 95.43 95.52
Bra009210.1-P Field mustard cytosol 94.09 95.45
Bra005900.1-P Field mustard cytosol 95.07 95.16
CDX98939 Canola cytosol 94.98 94.98
CDX81009 Canola cytosol 93.82 93.65
AT3G11910.1 Thale cress cytosol 91.31 91.39
VIT_08s0032g00600.t01 Wine grape cytosol 86.38 86.38
PGSC0003DMT400072539 Potato cytosol 83.51 83.07
Solyc10g081610.1.1 Tomato cytosol, extracellular, nucleus 83.33 82.89
Os07t0163800-01 Rice cytosol, plasma membrane 20.16 76.53
CDX72290 Canola cytosol, mitochondrion, plastid 10.66 65.38
TraesCS3A01G176700.1 Wheat cytosol 5.56 31.79
AT5G52330.3 Thale cress cytosol 7.97 22.42
AT4G16045.1 Thale cress cytosol 6.72 19.63
AT2G25330.1 Thale cress nucleus 10.3 16.59
AT3G49600.1 Thale cress cytosol 15.5 16.21
AT5G43560.1 Thale cress nucleus 14.87 15.73
AT1G04300.3 Thale cress nucleus 14.43 14.88
AT2G25320.3 Thale cress nucleus, plastid 16.49 10.99
Protein Annotations
MapMan:14.6.2.3MapMan:19.2.3.1.1.5Gene3D:2.60.210.10Gene3D:3.10.20.90Gene3D:3.90.70.10EntrezGene:830548
ProteinID:AED91039.1ProteinID:AED91040.1EMBL:AF302663EMBL:AF360198ArrayExpress:AT5G06600EnsemblPlantsGene:AT5G06600
RefSeq:AT5G06600TAIR:AT5G06600RefSeq:AT5G06600-TAIR-GEnsemblPlants:AT5G06600.1TAIR:AT5G06600.1EMBL:AY142616
Unigene:At.22362ProteinID:BAB11409.1MEROPS:C19.A73ncoils:CoilGO:GO:0003674GO:GO:0003824
GO:GO:0004843GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0005737GO:GO:0005829GO:GO:0006464GO:GO:0006508GO:GO:0006511
GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0008233GO:GO:0008234
GO:GO:0009056GO:GO:0009719GO:GO:0009867GO:GO:0009987GO:GO:0016579GO:GO:0016787
GO:GO:0019538GO:GO:0036459InterPro:IPR002083InterPro:IPR008974InterPro:IPR028889InterPro:MATH/TRAF_dom
RefSeq:NP_568171.1RefSeq:NP_850783.1PFAM:PF00443PFAM:PF00917PFAM:PF12436PFAM:PF14533
PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230PO:PO:0000293PO:PO:0001017
PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064
PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611
PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010
PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046
PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137
PO:PO:0025022PO:PO:0025195PO:PO:0025281ScanProsite:PS00972ScanProsite:PS00973PFscan:PS50144
PFscan:PS50235PANTHER:PTHR24006PANTHER:PTHR24006:SF565InterPro:Papain_like_cys_pep_sfInterPro:Peptidase_C19_UCHUniProt:Q9FPT1
SMART:SM00061SUPFAM:SSF49599SUPFAM:SSF54001InterPro:TRAF-likeSymbol:UBP12UniParc:UPI0000162468
InterPro:USP7_ICP0-binding_domInterPro:USP_CInterPro:USP_CSInterPro:USP_domSEG:seg:
Description
UBP12Ubiquitin carboxyl-terminal hydrolase 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPT1]
Coordinates
chr5:-:2019084..2028116
Molecular Weight (calculated)
130614.0 Da
IEP (calculated)
5.533
GRAVY (calculated)
-0.643
Length
1116 amino acids
Sequence
(BLAST)
0001: MTMMTPPPVD QPEDEEMLVP NSDLVDGPAQ PMEVTQPETA ASTVENQPAE DPPTLKFTWT IPNFSRQNTR KHYSDVFVVG GYKWRILIFP KGNNVDHLSM
0101: YLDVSDAASL PYGWSRYAQF SLAVVNQIHT RYTVRKETQH QFNARESDWG FTSFMPLSEL YDPSRGYLVN DTVLVEAEVA VRKVLDYWSY DSKKETGFVG
0201: LKNQGATCYM NSLLQTLYHI PYFRKAVYHM PTTENDAPTA SIPLALQSLF YKLQYNDTSV ATKELTKSFG WDTYDSFMQH DVQELNRVLC EKLEDKMKGT
0301: VVEGTIQQLF EGHHMNYIEC INVDFKSTRK ESFYDLQLDV KGCKDVYASF DKYVEVERLE GDNKYHAEGH GLQDAKKGVL FIDFPPVLQL QLKRFEYDFM
0401: RDTMVKINDR YEFPLELDLD REDGKYLSPD ADRSVRNLYT LHSVLVHSGG VHGGHYYAFI RPTLSDQWYK FDDERVTKED LKRALEEQYG GEEELPQTNP
0501: GFNNNPPFKF TKYSNAYMLV YIRESDKDKI ICNVDEKDIA EHLRVRLKKE QEEKEDKRRY KAQAHLYTII KVARDEDLKE QIGKDIYFDL VDHDKVRSFR
0601: IQKQTPFQQF KEEVAKEFGV PVQLQRFWIW AKRQNHTYRP NRPLTPQEEL QPVGQIREAS NKANTAELKL FLEVEHLDLR PIPPPEKSKE DILLFFKLYD
0701: PEKAVLSYAG RLMVKSSSKP MDITGKLNEM VGFAPDEEIE LFEEIKFEPC VMCEHLDKKT SFRLCQIEDG DIICFQKPLV NKEIECLYPA VPSFLEYVQN
0801: RQLVRFRALE KPKEDEFVLE LSKQHTYDDV VEKVAEKLGL DDPSKLRLTS HNCYSQQPKP QPIKYRGVDH LSDMLVHYNQ TSDILYYEVL DIPLPELQGL
0901: KTLKVAFHHA TKEEVVIHNI RLPKQSTVGD VINELKTKVE LSHPDAELRL LEVFYHKIYK IFPSTERIEN INDQYWTLRA EEIPEEEKNI GPNDRLILVY
1001: HFAKETGQNQ QVQNFGEPFF LVIHEGETLE EIKNRIQKKL HVSDEDFAKW KFAFMSMGRP EYLQDTDVVY NRFQRRDVYG AFEQYLGLEH ADTTPKRAYA
1101: ANQNRHAYEK PVKIYN
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.