Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400042094 | Potato | cytosol | 26.16 | 67.81 |
| AT5G52330.3 | Thale cress | cytosol | 25.5 | 67.76 |
| AT1G04300.3 | Thale cress | nucleus | 64.17 | 62.57 |
| OQU79503 | Sorghum | nucleus | 26.45 | 61.59 |
| VIT_05s0020g04980.t01 | Wine grape | nucleus | 54.88 | 50.52 |
| KRH31732 | Soybean | nucleus | 53.84 | 49.87 |
| KRG92287 | Soybean | nucleus | 53.36 | 49.39 |
| KRH34524 | Soybean | nucleus | 52.89 | 48.9 |
| Solyc03g005430.2.1 | Tomato | nucleus | 50.62 | 46.48 |
| KRG90366 | Soybean | endoplasmic reticulum, plasma membrane | 53.93 | 46.34 |
| AT4G16045.1 | Thale cress | cytosol | 16.49 | 45.55 |
| Os05t0508700-01 | Rice | nucleus | 32.61 | 44.62 |
| Solyc06g053750.2.1 | Tomato | nucleus | 48.06 | 44.55 |
| Solyc09g089560.2.1 | Tomato | nucleus | 46.54 | 44.47 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 43.79 | 42.94 |
| EES16279 | Sorghum | nucleus | 43.98 | 41.35 |
| TraesCS5B01G071600.1 | Wheat | nucleus | 43.13 | 40.55 |
| TraesCS5D01G072000.1 | Wheat | nucleus | 42.94 | 40.34 |
| TraesCS5A01G060400.1 | Wheat | nucleus | 42.84 | 40.25 |
| HORVU5Hr1G016190.3 | Barley | nucleus | 42.75 | 40.16 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 44.74 | 33.43 |
| EES01550 | Sorghum | nucleus | 37.82 | 32.98 |
| TraesCS3D01G310000.1 | Wheat | nucleus | 39.05 | 32.04 |
| Os01t0775300-01 | Rice | cytosol, mitochondrion, nucleus | 39.34 | 31.85 |
| KXG22306 | Sorghum | nucleus | 38.86 | 31.83 |
| TraesCS3B01G343300.2 | Wheat | nucleus | 39.53 | 31.61 |
| TraesCS3A01G321300.2 | Wheat | nucleus | 39.05 | 31.33 |
| TraesCS1B01G339200.1 | Wheat | nucleus | 40.38 | 30.74 |
| TraesCS1A01G325900.1 | Wheat | nucleus | 40.38 | 30.69 |
| TraesCS1D01G327700.1 | Wheat | nucleus | 40.28 | 30.62 |
| HORVU3Hr1G075800.5 | Barley | cytosol, nucleus, plastid | 39.34 | 30.34 |
| HORVU1Hr1G078170.6 | Barley | cytosol | 40.38 | 29.62 |
| PGSC0003DMT400042093 | Potato | nucleus | 17.06 | 26.95 |
| Os12t0597200-01 | Rice | cytosol, nucleus, plastid | 6.82 | 23.3 |
| AT3G11910.1 | Thale cress | cytosol | 15.83 | 14.98 |
| AT5G06600.1 | Thale cress | cytosol | 15.73 | 14.87 |
| AT2G25330.1 | Thale cress | nucleus | 6.45 | 9.81 |
| AT3G49600.1 | Thale cress | cytosol | 8.25 | 8.15 |
| AT2G25320.3 | Thale cress | nucleus, plastid | 10.14 | 6.39 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:22.5.1.6 | EntrezGene:834376 | ProteinID:AED94981.1 | ProteinID:AED94982.1 | EMBL:AK226901 |
| EMBL:AK317030 | ArrayExpress:AT5G43560 | EnsemblPlantsGene:AT5G43560 | RefSeq:AT5G43560 | TAIR:AT5G43560 | RefSeq:AT5G43560-TAIR-G |
| EnsemblPlants:AT5G43560.1 | TAIR:AT5G43560.1 | EMBL:AY078956 | Unigene:At.43517 | ProteinID:BAB11619.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0043424 | GO:GO:0045087 | GO:GO:1905037 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom |
| RefSeq:NP_199169.1 | RefSeq:NP_851125.1 | PFAM:PF00917 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS50144 | PANTHER:PTHR45001 | UniProt:Q8RY18 | SMART:SM00061 | SUPFAM:SSF49599 |
| InterPro:TRAF-like | UniParc:UPI00000AB447 | SEG:seg | : | : | : |
Description
TRAF1AMATH domain-containing protein At5g43560 [Source:UniProtKB/Swiss-Prot;Acc:Q8RY18]
Coordinates
chr5:+:17500531..17505646
Molecular Weight (calculated)
117455.0 Da
IEP (calculated)
6.891
GRAVY (calculated)
-0.809
Length
1055 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSESTNEDSG AGRSSLEENS NGQRSQSEEA IAEWRSSEQV ENGTPSTSPP YWDIDDDDDF GSKPSQLFGK NTWTIEKFSD INKRELRGDV FEVGGYKWYI
0101: LIYPQGCDVC NHLSLFLCVA HHEKLLPGWS HFAQFTIAVS NKDPKKSKHS DTLHRFWKKE HDWGWKKFIE LPKLKEGFID DSGCLTIKAQ VQVIRERVDR
0201: PFRCLHYKYR EELVRVYLGN VEQICWRFVE EKRSKLGRLI EDKAKWKSFC AFWMGLDQNS RRRMSREKMD VILKIVVKHF FVEKEVTSTL VMDSLYSGLK
0301: ALEGQNKNKE SRPRLMDTEE STAPIVSVDK DSFALVDDVL LLLEKAALEP LPKKEEKSSQ NRTKDGNAGE EFSREAVERD DRRLTELGRR TVEIFVLAHI
0401: FSNKIEVAYQ EAIAWKRQEE LIREEEEAWL AESEQKGKRG ASEKEKKSKK KQAKQKKNKN KGKEMRKEDK VRTQTEEREI EKEECVRAIA ESSAEKPDTL
0501: GDVSDVSDSV DSSAEILQLD SEDRESSPVH WEMDASEVHP PSAGDTSRGR GNSFSIPNGV AERKGLSTMD DSSSTCSNDS IQSGVANGSY KGNVLNCQSQ
0601: KWFSNGKIQP GKVSDSNSLA SEKEHQPSRL ASDPKNQSHS SDIRRVGEAD IVISHIQKPE SPKERSPVSK DPNMIQMKEK SAAVLSPSRA APWNPPSPVQ
0701: AKPEKKGVSN VEAVPNRKVI SVKSPSSHHA SPSREAQLQT VGPRADIQKI ASPKPVEQPA PPMSRPLSAP IIPPTQAAPV ISAVQTSTAS LARSMSSTGR
0801: LGSPTHSQAY NPQSYKHAIV GSSGFTHPSS QSSGTSTLPP YSHPSPISVS NQSGFPINVG SWDVSSGGLL WTGGSSSTRD TTTTISGNHK TNTYNAPVVT
0901: TSIRPTNVQI GRTAQSLMTD EFPHLDIIND LLADEHGTMD NSVYRVPQQF NNQYSYHGGA DLGISSRSRS YSDDGFHQSY GEYMPHSASS SPYGNGQTQS
1001: QWQMANMDFS LPAMRNQDDV SASATATYSY FDLDSSNPNL SGINGYRDFR PSNGH
0101: LIYPQGCDVC NHLSLFLCVA HHEKLLPGWS HFAQFTIAVS NKDPKKSKHS DTLHRFWKKE HDWGWKKFIE LPKLKEGFID DSGCLTIKAQ VQVIRERVDR
0201: PFRCLHYKYR EELVRVYLGN VEQICWRFVE EKRSKLGRLI EDKAKWKSFC AFWMGLDQNS RRRMSREKMD VILKIVVKHF FVEKEVTSTL VMDSLYSGLK
0301: ALEGQNKNKE SRPRLMDTEE STAPIVSVDK DSFALVDDVL LLLEKAALEP LPKKEEKSSQ NRTKDGNAGE EFSREAVERD DRRLTELGRR TVEIFVLAHI
0401: FSNKIEVAYQ EAIAWKRQEE LIREEEEAWL AESEQKGKRG ASEKEKKSKK KQAKQKKNKN KGKEMRKEDK VRTQTEEREI EKEECVRAIA ESSAEKPDTL
0501: GDVSDVSDSV DSSAEILQLD SEDRESSPVH WEMDASEVHP PSAGDTSRGR GNSFSIPNGV AERKGLSTMD DSSSTCSNDS IQSGVANGSY KGNVLNCQSQ
0601: KWFSNGKIQP GKVSDSNSLA SEKEHQPSRL ASDPKNQSHS SDIRRVGEAD IVISHIQKPE SPKERSPVSK DPNMIQMKEK SAAVLSPSRA APWNPPSPVQ
0701: AKPEKKGVSN VEAVPNRKVI SVKSPSSHHA SPSREAQLQT VGPRADIQKI ASPKPVEQPA PPMSRPLSAP IIPPTQAAPV ISAVQTSTAS LARSMSSTGR
0801: LGSPTHSQAY NPQSYKHAIV GSSGFTHPSS QSSGTSTLPP YSHPSPISVS NQSGFPINVG SWDVSSGGLL WTGGSSSTRD TTTTISGNHK TNTYNAPVVT
0901: TSIRPTNVQI GRTAQSLMTD EFPHLDIIND LLADEHGTMD NSVYRVPQQF NNQYSYHGGA DLGISSRSRS YSDDGFHQSY GEYMPHSASS SPYGNGQTQS
1001: QWQMANMDFS LPAMRNQDDV SASATATYSY FDLDSSNPNL SGINGYRDFR PSNGH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.