Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G433200.1 | |
| TraesCS3B01G469000.1 | |
| TraesCS3D01G426600.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G43560.1 | TraesCS3A01G433200.1 | AT1G27320.1 | 18642946 |
| AT5G43560.1 | TraesCS3B01G469000.1 | AT1G27320.1 | 18642946 |
| AT5G43560.1 | TraesCS3D01G426600.1 | AT1G27320.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G339200.1 | Wheat | nucleus | 97.48 | 97.62 |
| TraesCS1A01G325900.1 | Wheat | nucleus | 97.26 | 97.26 |
| HORVU1Hr1G078170.6 | Barley | cytosol | 92.22 | 89.01 |
| Os05t0508700-01 | Rice | nucleus | 44.02 | 79.25 |
| KXG22306 | Sorghum | nucleus | 64.41 | 69.41 |
| Zm00001d038655_P003 | Maize | nucleus | 63.26 | 67.54 |
| Zm00001d010716_P002 | Maize | nucleus | 59.8 | 63.07 |
| PGSC0003DMT400042094 | Potato | cytosol | 18.44 | 62.9 |
| AT5G52330.3 | Thale cress | cytosol | 17.44 | 60.96 |
| TraesCS3D01G310000.1 | Wheat | nucleus | 51.95 | 56.07 |
| Solyc06g053740.2.1 | Tomato | cytosol | 16.79 | 56.01 |
| CDX73257 | Canola | cytosol | 15.06 | 51.48 |
| Bra023279.1-P | Field mustard | cytosol | 12.32 | 49.0 |
| CDX93823 | Canola | cytosol | 13.4 | 48.06 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 33.86 | 43.68 |
| KRH31732 | Soybean | nucleus | 35.23 | 42.93 |
| KRH34524 | Soybean | nucleus | 35.01 | 42.59 |
| VIT_05s0020g04980.t01 | Wine grape | nucleus | 35.16 | 42.58 |
| AT4G16045.1 | Thale cress | cytosol | 11.67 | 42.41 |
| CDY26906 | Canola | cytosol | 6.7 | 42.27 |
| Bra010174.1-P | Field mustard | cytosol | 6.7 | 42.27 |
| TraesCS5D01G072000.1 | Wheat | nucleus | 34.08 | 42.12 |
| CDX86642 | Canola | nucleus | 31.56 | 41.91 |
| KRG92287 | Soybean | nucleus | 34.37 | 41.84 |
| CDY10066 | Canola | nucleus | 30.33 | 41.52 |
| CDY32539 | Canola | nucleus | 30.04 | 41.45 |
| CDX89828 | Canola | nucleus | 31.27 | 40.9 |
| CDY18218 | Canola | nucleus | 31.12 | 40.83 |
| Bra015302.1-P | Field mustard | nucleus | 31.12 | 40.75 |
| Solyc09g089560.2.1 | Tomato | nucleus | 32.28 | 40.58 |
| Bra032518.1-P | Field mustard | nucleus | 28.89 | 40.34 |
| AT5G43560.1 | Thale cress | nucleus | 30.62 | 40.28 |
| KRG90366 | Soybean | endoplasmic reticulum, plasma membrane | 35.16 | 39.74 |
| Solyc06g053750.2.1 | Tomato | nucleus | 32.49 | 39.63 |
| AT1G04300.3 | Thale cress | nucleus | 30.84 | 39.56 |
| Solyc03g005430.2.1 | Tomato | nucleus | 32.42 | 39.16 |
| CDY01258 | Canola | cytosol | 5.76 | 39.02 |
| CDY01264 | Canola | cytosol | 5.69 | 38.54 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 35.52 | 34.91 |
| CDX94711 | Canola | nucleus | 23.05 | 33.23 |
| Bra033684.1-P | Field mustard | nucleus | 22.19 | 33.23 |
| CDY22344 | Canola | nucleus | 22.19 | 33.23 |
| PGSC0003DMT400042093 | Potato | nucleus | 10.45 | 21.71 |
| TraesCS5D01G123300.4 | Wheat | cytosol | 11.82 | 14.55 |
| TraesCS4D01G165800.1 | Wheat | unclear | 11.6 | 14.39 |
| TraesCS3D01G307100.1 | Wheat | cytosol | 11.38 | 14.31 |
| TraesCS2D01G249100.1 | Wheat | nucleus | 11.17 | 13.85 |
| TraesCS4D01G266600.2 | Wheat | mitochondrion, nucleus | 6.05 | 7.82 |
| Bra041162.1-P | Field mustard | cytosol, nucleus, plastid | 1.08 | 7.54 |
| TraesCS6D01G204500.1 | Wheat | nucleus, plastid | 8.79 | 7.34 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G327700.1 | EnsemblPlantsGene:TraesCS1D01G327700 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil | PANTHER:PTHR45001 |
| PFAM:PF00917 | PFscan:PS50144 | SEG:seg | SMART:SM00061 | SUPFAM:SSF49599 | TIGR:cd00121 |
| MapMan:22.5.1.6 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1D:-:419733807..419745507
Molecular Weight (calculated)
151792.0 Da
IEP (calculated)
8.960
GRAVY (calculated)
-0.739
Length
1388 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAGASATDDS SASTAGMRDD DRSLSGESLS EWRSCDQGES GSPSTSPPFW DTDYDDDDPA GPKPSELYGR HTWRIENFSK EKKREMKSEP FEAGGYKWYI
0101: LVYPQGCDVS NHLSLFLCVA NHDKLLPGWS HFAQFTIAVG NMDPKKIKYS DTLHRFWKKE HDWGWKKFME LSKIQDGFLV DDVLEIIAQV QVIREKVDRP
0201: FRCLDRPYRR ELLRVYTTNI EQIYRRFIEE RRNKLTKLIE DKIRWSSFRA FWSAIDPRTR HRMSREKTDI ILKVLVKHFF VEKEVTSTLV MDSLYTGLKA
0301: LEYQSMGKKG RTKIAELDEL PAPMVNVDMD IFVLAGDVIT LLERAALEPL PCQPVSPKDD KCSQSRMKDG SSGEVNKISM EREERRLTEL GRKILETFVL
0401: SHIFSGIEVA YQEAVALKRQ EELIREEEAA GLENETKGKR GGGANEKDKR AKKKQAKQKK NNRKVKDKER EDKSEARILE RLNDEITVDD SDGLPSKQAE
0501: EVALKVGLTL EEGASDGPDH LDSSRPMNGK RVSSMEANSS AFSADSTAMN GIHSKINNLP DSRNHVSPNR GKNQRNKGIS IISYAEEDDC LPSSSVTGSS
0601: DRNSSGCGTA PKLDRDTVLL TLKDRLRELG QRLHEKNIEG RKLFKAHFEA MENQTKTNGS SSSSSTEKPP DVLKSPEHSP EVTNDVKANG TANKEVPLAN
0701: GVPEEAVSGM PATTSTEAVP VKAPTRTKVD PVSNKDHGSS LTPQPIRAPP NSSKSTPTDT DKDVPLPSRS PRINRAAPAP PKSPPTDKAT PVRPKSPPAE
0801: KATPVPPKSP PTHKATPVPP KSPPTDKAIP VTPKSPLTDK ATSVPPKSPA AAKAAVVPLK SPATDKANLV PLKSPSAGKS SLVVPITPPS AKDAGTPSRS
0901: LQVDKSIPAP PRLPQVDKAA PLPSASPQTS STTYSEAREE TTPIKVTSTR VSEVAVTTSR PSSAPVFPTP RTTVPATPQV QVSTLLSRSA SEAAVRSGND
1001: PSPSAPAYVP QTYRNAILGK AGLGTSSSIL SYQSTSLGQA TALSQPLSTY ASTASLMMPP AGRNDQLLSA RHGFKSGLGN SDTLDSWQPW KGDSSINNHL
1101: WRDDSPYQRT TNGHAYQQTW KDDAYHQTRG TETENFSRFG GLQPPRQAPV SFVMQQPQAP VAEEYQHLDI INDLLDEGQS NGSKAEPMRH DYHAYGLPFS
1201: LRGNIADSEM ASVSSPGRFS RGNLADLDMA SLSSSRRFSR GNLVDSEMSS VGSPGRFSRG SLADPEMLAS VSSPSRFNST DRYYDDGFSR AYDMSPLQGQ
1301: GTREIQFSSL DGYSTNGGLS DMSTSKPWLY GGHSPVNPSS MNLGSLSTNG FPQHHHQMGD YSSNLASGVN GVGSAAAAYR RQANNGRW
0101: LVYPQGCDVS NHLSLFLCVA NHDKLLPGWS HFAQFTIAVG NMDPKKIKYS DTLHRFWKKE HDWGWKKFME LSKIQDGFLV DDVLEIIAQV QVIREKVDRP
0201: FRCLDRPYRR ELLRVYTTNI EQIYRRFIEE RRNKLTKLIE DKIRWSSFRA FWSAIDPRTR HRMSREKTDI ILKVLVKHFF VEKEVTSTLV MDSLYTGLKA
0301: LEYQSMGKKG RTKIAELDEL PAPMVNVDMD IFVLAGDVIT LLERAALEPL PCQPVSPKDD KCSQSRMKDG SSGEVNKISM EREERRLTEL GRKILETFVL
0401: SHIFSGIEVA YQEAVALKRQ EELIREEEAA GLENETKGKR GGGANEKDKR AKKKQAKQKK NNRKVKDKER EDKSEARILE RLNDEITVDD SDGLPSKQAE
0501: EVALKVGLTL EEGASDGPDH LDSSRPMNGK RVSSMEANSS AFSADSTAMN GIHSKINNLP DSRNHVSPNR GKNQRNKGIS IISYAEEDDC LPSSSVTGSS
0601: DRNSSGCGTA PKLDRDTVLL TLKDRLRELG QRLHEKNIEG RKLFKAHFEA MENQTKTNGS SSSSSTEKPP DVLKSPEHSP EVTNDVKANG TANKEVPLAN
0701: GVPEEAVSGM PATTSTEAVP VKAPTRTKVD PVSNKDHGSS LTPQPIRAPP NSSKSTPTDT DKDVPLPSRS PRINRAAPAP PKSPPTDKAT PVRPKSPPAE
0801: KATPVPPKSP PTHKATPVPP KSPPTDKAIP VTPKSPLTDK ATSVPPKSPA AAKAAVVPLK SPATDKANLV PLKSPSAGKS SLVVPITPPS AKDAGTPSRS
0901: LQVDKSIPAP PRLPQVDKAA PLPSASPQTS STTYSEAREE TTPIKVTSTR VSEVAVTTSR PSSAPVFPTP RTTVPATPQV QVSTLLSRSA SEAAVRSGND
1001: PSPSAPAYVP QTYRNAILGK AGLGTSSSIL SYQSTSLGQA TALSQPLSTY ASTASLMMPP AGRNDQLLSA RHGFKSGLGN SDTLDSWQPW KGDSSINNHL
1101: WRDDSPYQRT TNGHAYQQTW KDDAYHQTRG TETENFSRFG GLQPPRQAPV SFVMQQPQAP VAEEYQHLDI INDLLDEGQS NGSKAEPMRH DYHAYGLPFS
1201: LRGNIADSEM ASVSSPGRFS RGNLADLDMA SLSSSRRFSR GNLVDSEMSS VGSPGRFSRG SLADPEMLAS VSSPSRFNST DRYYDDGFSR AYDMSPLQGQ
1301: GTREIQFSSL DGYSTNGGLS DMSTSKPWLY GGHSPVNPSS MNLGSLSTNG FPQHHHQMGD YSSNLASGVN GVGSAAAAYR RQANNGRW
0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.