Factsheet for Bra023279.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01258	Canola	cytosol	55.3	94.15
CDY01264	Canola	cytosol	54.15	92.2
CDX93823	Canola	cytosol	97.71	88.11
Bra010174.1-P	Field mustard	cytosol	41.83	66.36
OQU79503	Sorghum	nucleus	47.28	36.42
AT4G16045.1	Thale cress	cytosol	38.68	35.34
Os05t0508700-01	Rice	nucleus	49.57	22.44
Bra032518.1-P	Field mustard	nucleus	53.87	18.91
Bra015302.1-P	Field mustard	nucleus	56.45	18.58
Bra033684.1-P	Field mustard	nucleus	43.55	16.4
GSMUA_Achr2P12590_001	Banana	nucleus	48.71	15.8
TraesCS5B01G071600.1	Wheat	nucleus	50.14	15.6
TraesCS5D01G072000.1	Wheat	nucleus	50.14	15.58
TraesCS5A01G060400.1	Wheat	nucleus	50.14	15.58
HORVU5Hr1G016190.3	Barley	nucleus	50.14	15.58
EES16279	Sorghum	nucleus	49.28	15.33
EES01550	Sorghum	nucleus	47.56	13.72
Os01t0775300-01	Rice	cytosol, mitochondrion, nucleus	49.28	13.2
TraesCS3D01G310000.1	Wheat	nucleus	47.85	12.99
KXG22306	Sorghum	nucleus	47.56	12.89
TraesCS3B01G343300.2	Wheat	nucleus	48.14	12.74
TraesCS3A01G321300.2	Wheat	nucleus	47.85	12.7
TraesCS1B01G339200.1	Wheat	nucleus	49.57	12.48
TraesCS1A01G325900.1	Wheat	nucleus	49.28	12.39
HORVU3Hr1G075800.5	Barley	cytosol, nucleus, plastid	48.42	12.35
TraesCS1D01G327700.1	Wheat	nucleus	49.0	12.32
HORVU1Hr1G078170.6	Barley	cytosol	49.57	12.03
GSMUA_Achr5P03190_001	Banana	nucleus	46.7	11.54
Bra028727.1-P	Field mustard	cytosol	20.63	6.33
Bra005900.1-P	Field mustard	cytosol	20.06	6.28
Bra009210.1-P	Field mustard	cytosol	19.77	6.27
Bra038685.1-P	Field mustard	cytosol	19.77	6.26
Bra001426.1-P	Field mustard	cytosol	19.2	6.03
Bra034802.1-P	Field mustard	cytosol	18.34	5.74
Bra041162.1-P	Field mustard	cytosol, nucleus, plastid	2.87	5.03
Bra007802.1-P	Field mustard	nucleus, plastid	13.18	2.76
Bra019603.1-P	Field mustard	cytosol	8.02	2.73
Bra034251.1-P	Field mustard	nucleus	12.61	2.67
Bra017972.1-P	Field mustard	cytosol	7.45	2.5
Os12t0597200-01	Rice	cytosol, nucleus, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:Bra023279.1	EnsemblPlants:Bra023279.1-P	EnsemblPlantsGene:Bra023279	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	ncoils:Coil
PANTHER:PTHR45001	PFAM:PF00917	PFscan:PS50144	SUPFAM:SSF49599	UniParc:UPI0002542272	UniProt:M4E3C8
MapMan:35.1	:	:	:	:	:

Description

AT5G52330 (E=6e-089) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Coordinates

chrA09:+:19994896..19996755

Molecular Weight (calculated)

40920.9 Da

IEP (calculated)

6.331

GRAVY (calculated)

-0.278

Length

349 amino acids

Sequence
(BLAST)

001: MSEITKEDSE ICKKEIRSNV FEIGGLQWYI LFYPQGCEIC NHLSVFLCAA SHQKLLPDTL HKFYKREHDW GWKNFIELPR LLDGFIDDSG SLIIKAQVQV
101: IRKSVNGPFP CLDSQYRKEL LRVYFKVVKQ IFLRFMKEKR NKLMEDKTRW TSLCAFWLGM DQKPRRAMSR EKMDVIQKLV VKHFFINKNV TSPLVMDFLF
201: KGLNSLVLDT NKEKIILTIS KQIVRLLKDD SDASEKTLKT LEDEPKKEIA FAAKELAVPI VSVDNDMFVL ADDAMLLLEK AVLEPFPDER VPPNRMEVDY
301: DEESDDEKLL TEYARHTLEV FVLDHIFCNK IEIAYKEASE LKMHEELIR

Best Arabidopsis Sequence Match ( AT1G04300.1 )
(BLAST)

0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH

Arabidopsis Description

TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.