Factsheet for Bra028727.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14077	Canola	cytosol	97.72	99.64
CDY04994	Canola	cytosol	97.72	99.64
Bra005900.1-P	Field mustard	cytosol	94.99	96.95
Bra009210.1-P	Field mustard	cytosol	92.79	96.0
Bra038685.1-P	Field mustard	cytosol	85.06	87.84
Bra034802.1-P	Field mustard	cytosol	85.24	87.0
VIT_08s0032g00600.t01	Wine grape	cytosol	84.62	86.29
Bra001426.1-P	Field mustard	cytosol	83.3	85.25
PGSC0003DMT400072539	Potato	cytosol	81.81	82.98
Solyc10g081610.1.1	Tomato	cytosol, extracellular, nucleus	81.81	82.98
Os07t0163800-01	Rice	cytosol, plasma membrane	19.77	76.53
TraesCS3A01G176700.1	Wheat	cytosol	5.62	32.82
Bra041162.1-P	Field mustard	cytosol, nucleus, plastid	3.78	21.61
Bra023279.1-P	Field mustard	cytosol	6.33	20.63
Bra019603.1-P	Field mustard	cytosol	14.67	16.28
Bra017972.1-P	Field mustard	cytosol	14.5	15.87
Bra032518.1-P	Field mustard	nucleus	13.53	15.49
Bra015302.1-P	Field mustard	nucleus	14.32	15.38
Bra010174.1-P	Field mustard	cytosol	2.9	15.0
Bra033684.1-P	Field mustard	nucleus	11.6	14.24
Bra007802.1-P	Field mustard	nucleus, plastid	16.26	11.12
Bra034251.1-P	Field mustard	nucleus	15.73	10.87

Protein Annotations

MapMan:14.6.2.3	MapMan:19.2.3.1.1.5	Gene3D:2.60.210.10	Gene3D:3.10.20.90	Gene3D:3.90.70.10	EnsemblPlantsGene:Bra028727
EnsemblPlants:Bra028727.1	EnsemblPlants:Bra028727.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR002083
InterPro:IPR008974	InterPro:IPR028889	UniProt:M4EIW2	InterPro:MATH/TRAF_dom	PFAM:PF00443	PFAM:PF00917
PFAM:PF12436	PFAM:PF14533	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50144	PFscan:PS50235
PANTHER:PTHR24006	PANTHER:PTHR24006:SF565	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SMART:SM00061	SUPFAM:SSF49599
SUPFAM:SSF54001	InterPro:TRAF-like	UniParc:UPI0002543186	InterPro:USP7_ICP0-binding_dom	InterPro:USP_C	InterPro:USP_CS
InterPro:USP_dom	SEG:seg	:	:	:	:

Description

AT5G06600 (E=0.0) UBP12 | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12); ubiquitin thiolesterase/ ubiquitin-specific protease

Coordinates

chrA02:-:2353542..2361830

Molecular Weight (calculated)

133580.0 Da

IEP (calculated)

5.447

GRAVY (calculated)

-0.632

Length

1138 amino acids

Sequence
(BLAST)

0001: MTMVTPPPVD QQEDEEMLVP HSDLVEDPAQ PMEVSETETA VSTVENQPAA EEPPTLKFTW TIPHFSRINT RKQYSDVFVV GGYKWRILIF PKGNNVDHLS
0101: MYLDVADAAS LPYGWSRYAQ FSLAVVNQVH TRYTIRKETQ HQFNARESDW GFTSFMPLSE LYDPSRGYLA NDTVYIEAEV VVRKVLDYWS YDSKKETGFV
0201: GLKNQGATCY MNSLLQTLYH IPYFRKAVYH MPTTENDAPT ASIPLALQSL FYKLQYNDTS VATKELTKSF GWDTYDSFMQ HDVQELNRVL CEKLEDKMKG
0301: TVVEGTIQQL FEGHHMNYIE CINVDYKSTR KESFYDLQLD VKGCKDVYAS FDKYVEVERL EGDNKYHAEG HGLQDAKKGV LFIDFPPVLQ LQLKRFEYDF
0401: MRDSMVKIND RYEFPLELDL DREDGKYLSP DADRSVRNLY TLHSVLVHSG GVHGGHYYAF IRPTLSDQWY KFDDERVTKE DLKRALEEQY GGEEELPQTN
0501: PGFNNPPFKF TKFSNAYMLV YIRESDKDKI ICNVDEKDIA EHLRVRLKKE QEEKEDKRKY KAQAHLFTII KVARDQDLKE QIGKDIYFDL VDHDKVRSFR
0601: IQKQTPFQQF KEEVAKEFGI PVQCQRFWIW AKRQNHTYRP NRPLTPQEEL QPVGQIREAS NKANTAELKL FLEVELLDER PIPPPEKSKE DILLFFKLYD
0701: PEKPELRYVG RLMVKSSSKP MDITGKLNEM AGFAPDEEIE LFEEIKFEPG VMCEHLDKKN SFRLCQIEDG DIICFQKPVV NKETECRYPA VPLFLEYVQN
0801: RQLVRFRALE KPKEDEFVLE LSKLHTYDDV VERVAEKLGL DDPSKLRLTS HNCYSQQPKP QPIKYRGVDR LSDMLVHYNQ TSDILYYEVL DIPLPELQGL
0901: KTLKVAFHHS TKEEVVIHNI RLPKQSTVGD VINELKTKAL DYIDYKFDVM QVNLRLCLIQ VELSHPDAEL RILEVFYHKI YKIFPLTERI ENINDQYWTL
1001: RAEEIPEEEK NIGPNDRLIL VYHFAKETGQ NQQVQNFGEP FFLVIHEGET LEEIKNRIQK KLHVSDEDFA KWKFAFMSMG RPEYLQDSDV VYNRFQRRDV
1101: YGAFEQYLGL EHTDTTPKRA YSANQNRHAY EKPVKIYN

Best Arabidopsis Sequence Match ( AT5G06600.1 )
(BLAST)

0001: MTMMTPPPVD QPEDEEMLVP NSDLVDGPAQ PMEVTQPETA ASTVENQPAE DPPTLKFTWT IPNFSRQNTR KHYSDVFVVG GYKWRILIFP KGNNVDHLSM
0101: YLDVSDAASL PYGWSRYAQF SLAVVNQIHT RYTVRKETQH QFNARESDWG FTSFMPLSEL YDPSRGYLVN DTVLVEAEVA VRKVLDYWSY DSKKETGFVG
0201: LKNQGATCYM NSLLQTLYHI PYFRKAVYHM PTTENDAPTA SIPLALQSLF YKLQYNDTSV ATKELTKSFG WDTYDSFMQH DVQELNRVLC EKLEDKMKGT
0301: VVEGTIQQLF EGHHMNYIEC INVDFKSTRK ESFYDLQLDV KGCKDVYASF DKYVEVERLE GDNKYHAEGH GLQDAKKGVL FIDFPPVLQL QLKRFEYDFM
0401: RDTMVKINDR YEFPLELDLD REDGKYLSPD ADRSVRNLYT LHSVLVHSGG VHGGHYYAFI RPTLSDQWYK FDDERVTKED LKRALEEQYG GEEELPQTNP
0501: GFNNNPPFKF TKYSNAYMLV YIRESDKDKI ICNVDEKDIA EHLRVRLKKE QEEKEDKRRY KAQAHLYTII KVARDEDLKE QIGKDIYFDL VDHDKVRSFR
0601: IQKQTPFQQF KEEVAKEFGV PVQLQRFWIW AKRQNHTYRP NRPLTPQEEL QPVGQIREAS NKANTAELKL FLEVEHLDLR PIPPPEKSKE DILLFFKLYD
0701: PEKAVLSYAG RLMVKSSSKP MDITGKLNEM VGFAPDEEIE LFEEIKFEPC VMCEHLDKKT SFRLCQIEDG DIICFQKPLV NKEIECLYPA VPSFLEYVQN
0801: RQLVRFRALE KPKEDEFVLE LSKQHTYDDV VEKVAEKLGL DDPSKLRLTS HNCYSQQPKP QPIKYRGVDH LSDMLVHYNQ TSDILYYEVL DIPLPELQGL
0901: KTLKVAFHHA TKEEVVIHNI RLPKQSTVGD VINELKTKVE LSHPDAELRL LEVFYHKIYK IFPSTERIEN INDQYWTLRA EEIPEEEKNI GPNDRLILVY
1001: HFAKETGQNQ QVQNFGEPFF LVIHEGETLE EIKNRIQKKL HVSDEDFAKW KFAFMSMGRP EYLQDTDVVY NRFQRRDVYG AFEQYLGLEH ADTTPKRAYA
1101: ANQNRHAYEK PVKIYN

Arabidopsis Description

UBP12Ubiquitin carboxyl-terminal hydrolase 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPT1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.