Factsheet for Bra001426.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73847	Canola	cytosol	97.93	99.27
AT3G11910.1	Thale cress	cytosol	89.84	89.6
Bra034802.1-P	Field mustard	cytosol	89.66	89.42
Bra038685.1-P	Field mustard	cytosol	87.5	88.29
Bra005900.1-P	Field mustard	cytosol	84.89	84.66
Bra009210.1-P	Field mustard	cytosol	83.72	84.64
Bra028727.1-P	Field mustard	cytosol	85.25	83.3
VIT_08s0032g00600.t01	Wine grape	cytosol	81.74	81.45
Solyc10g081610.1.1	Tomato	cytosol, extracellular, nucleus	79.32	78.61
PGSC0003DMT400072539	Potato	cytosol	79.05	78.34
Os07t0163800-01	Rice	cytosol, plasma membrane	18.7	70.75
TraesCS3A01G176700.1	Wheat	cytosol	5.22	29.74
Bra041162.1-P	Field mustard	cytosol, nucleus, plastid	3.69	20.6
Bra023279.1-P	Field mustard	cytosol	6.03	19.2
Bra017972.1-P	Field mustard	cytosol	15.29	16.35
Bra019603.1-P	Field mustard	cytosol	14.93	16.18
Bra010174.1-P	Field mustard	cytosol	2.88	14.55
Bra032518.1-P	Field mustard	nucleus	12.86	14.39
Bra015302.1-P	Field mustard	nucleus	13.49	14.15
Bra033684.1-P	Field mustard	nucleus	11.15	13.38
Bra007802.1-P	Field mustard	nucleus, plastid	15.2	10.16
Bra034251.1-P	Field mustard	nucleus	14.84	10.02

Protein Annotations

MapMan:14.6.2.3	MapMan:19.2.3.1.1.5	Gene3D:2.60.210.10	Gene3D:3.10.20.90	Gene3D:3.90.70.10	EnsemblPlantsGene:Bra001426
EnsemblPlants:Bra001426.1	EnsemblPlants:Bra001426.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR002083
InterPro:IPR008974	InterPro:IPR028889	UniProt:M4CB47	InterPro:MATH/TRAF_dom	PFAM:PF00443	PFAM:PF00917
PFAM:PF12436	PFAM:PF14533	ScanProsite:PS00973	PFscan:PS50144	PFscan:PS50235	PANTHER:PTHR24006
PANTHER:PTHR24006:SF565	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SMART:SM00061	SUPFAM:SSF49599	SUPFAM:SSF54001
InterPro:TRAF-like	UniParc:UPI000254078B	InterPro:USP7_ICP0-binding_dom	InterPro:USP_C	InterPro:USP_CS	InterPro:USP_dom
SEG:seg	:	:	:	:	:

Description

AT3G11910 (E=0.0) UBP13 | UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13); ubiquitin thiolesterase/ ubiquitin-specific protease

Coordinates

chrA03:-:16317459..16325723

Molecular Weight (calculated)

129707.0 Da

IEP (calculated)

5.291

GRAVY (calculated)

-0.587

Length

1112 amino acids

Sequence
(BLAST)

0001: MTMITPPPLD QQEDVEMLVP HSDVVEGPQP MEVAQPEAAA AVENPPVEEP PSVKFTWLIP GFTRLNTRKH YSEVFVAGGY KWRVLIFPKG NNVDHLAMYL
0101: DVADAASLPY GWCRYSHFGL TVVNQINNRY SVRKETQHQF NSRESDWGFT SFMPLGELYD PTRGYLVNDT VLIEAEVSVR KVLDYWAYDS KKETGFVGLK
0201: NQGATCYMNS LLETLYHIPY FRKAVYHMPT TENDAPTASI PLALQSLFYK LQYNDTSVAT KELTKSFGWD TYDSFMQHDV QELNRVLCEK LEDKMKGTVV
0301: EGTIQKLFEG HQMNYIECIN VDYKSTRKES FYDLQLDVKG CKDVYASFDK YVEVERLEGD NKYHAEGHDL QDAKKGVLFM DFPPVLQLQL KRFEYDFMRD
0401: IMVKINDRYE FPLQLDLDRE NGKYLSPDAD KSVRNLYTLH SVLVHSGGVN GGHYYAYIRP TLSDQWYKFD DERVTKEDVN RVLEEQYGGE EELPQNNPGF
0501: NNPPFKFTKY SNAYMLVYIR ESDKDKIICN VDEKDVAEHL RVRLKKEQEE KEDKRKYKAE AHLFTTVKVA RDEDITEQIG KNMYFDLVDH EKVKSFRIEK
0601: QTPFLLFKEE VAKEFGVPVE LQRFWIWAKR QNHTYRPNRP LLSHEELQMV GHIREASNKA NNAELKLFLE IVRGPDECPI PPPAKSFEDI LLFFKLYDPE
0701: NGILRYVGRL MVKNSSKPMD IIGELIQMAG FAPDEEIELF EEIKFQPCVM CEHLDKNMSF KLSQIEDGDI ICYQKAISIQ ENECPYPDVP SFLEYVQNRE
0801: VVRFRTLEKP NDDEFTMELS KLHSYDDVVD RLAEKIGLDD SSKIRLTPHN CYSQQPKPQP IKYRGVDHLS DMLAHYNQTS DILYYEVLDI PLPELQGLKI
0901: LNVAFHHASK DEVIIHTIRL PKQSTVGDVI NELKTKVELS HQDAELRLLE VFSHKIYKIF VSTERIENIN DSYWTLLADE IPEEEKNIGP NARLIHVYHF
1001: TKESGPNQQV HNFGDPFVLV IHEGETLEEI KTRIQKKLHV PDEDFAKWKF ASVSTGRPDY LQDTDVVYNR FHQRKDVYGA WEQYLGLEHV DNAPKRAYQN
1101: RHAYEKPVKI YN

Best Arabidopsis Sequence Match ( AT3G11910.1 )
(BLAST)

0001: MTMMTPPPLD QQEDEEMLVP NPDLVEGPQP MEVAQTDPAA TAVENPPPED PPSLKFTWTI PMFTRLNTRK HYSDVFVVGG YKWRILIFPK GNNVDHLSMY
0101: LDVADAANLP YGWSRYSQFS LAVVNQVNNR YSIRKETQHQ FNARESDWGF TSFMPLSELY EPTRGYLVND TVLIEAEVAV RKVLDYWSYD SKKETGFVGL
0201: KNQGATCYMN SLLQTLYHIP YFRKAVYHMP TTENDAPTAS IPLALQSLFY KLQYNDTSVA TKELTKSFGW DTYDSFMQHD VQELNRVLCE KLEDKMKGTV
0301: VEGTIQKLFE GHHMNYIECI NVDYKSTRKE SFYDLQLDVK GCKDVYASFD KYVEVERLEG DNKYHAEGHD LQDAKKGVLF IDFPPVLQLQ LKRFEYDFMR
0401: DTMVKINDRY EFPLQLDLDR EDGRYLSPDA DKSVRNLYTL HSVLVHSGGV HGGHYYAFIR PTLSDQWYKF DDERVTKEDV KRALEEQYGG EEELPQNNPG
0501: FNNPPFKFTK YSNAYMLVYI RESDKDKIIC NVDEKDIAEH LRVRLKKEQE EKEDKRKYKA QAHLFTTIKV ARDDDITEQI GKNIYFDLVD HEKVRSFRIQ
0601: KQTPFQQFKE EVAKEFGVPV QLQRFWIWAK RQNHTYRPNR PLSPNEELQT VGQIREASNK ANNAELKLFL EIERGPDDLP IPPPEKTSED ILLFFKLYDP
0701: ENAVLRYVGR LMVKSSSKPM DIVGQLNKMA GFAPDEEIEL FEEIKFEPCV MCEQIDKKTS FRLCQIEDGD IICYQKPLSI EESEFRYPDV PSFLEYVQNR
0801: ELVRFRTLEK PKEDEFTMEL SKLHTYDDVV ERVAEKLGLD DPSKLRLTSH NCYSQQPKPQ PIKYRGVDHL SDMLVHYNQT SDILYYEVLD IPLPELQGLK
0901: TLKVAFHSAT KDEVIIHNIR LPKQSTVGDV INELKTKVEL SHQDAELRLL EVFFHKIYKI FPSTERIENI NDQYWTLRAE EIPEEEKNIG PNDRLIHVYH
1001: FTKEAGQNQQ VQNFGEPFFL VIHEGETLEE IKTRIQKKLH VPDEDFAKWK FASFSMGRPD YLLDTDVVYN RFQRRDVYGA WEQYLGLEHI DNAPKRAYAA
1101: NQNRHAYEKP VKIYN

Arabidopsis Description

UBP13UBP13 [Source:UniProtKB/TrEMBL;Acc:A0A178VEE0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.