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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY26906 Canola cytosol 100.0 100.0
Bra023279.1-P Field mustard cytosol 66.36 41.83
AT4G16045.1 Thale cress cytosol 39.09 22.51
OQU79503 Sorghum nucleus 37.27 18.1
Os05t0508700-01 Rice nucleus 43.18 12.32
Bra032518.1-P Field mustard nucleus 49.55 10.97
Bra015302.1-P Field mustard nucleus 51.36 10.66
Bra033684.1-P Field mustard nucleus 40.0 9.49
GSMUA_Achr2P12590_001 Banana nucleus 44.09 9.01
TraesCS5B01G071600.1 Wheat nucleus 41.36 8.11
TraesCS5D01G072000.1 Wheat nucleus 41.36 8.1
TraesCS5A01G060400.1 Wheat nucleus 41.36 8.1
HORVU5Hr1G016190.3 Barley nucleus 41.36 8.1
EES16279 Sorghum nucleus 39.55 7.75
Os01t0775300-01 Rice cytosol, mitochondrion, nucleus 42.73 7.21
EES01550 Sorghum nucleus 39.55 7.19
TraesCS3D01G310000.1 Wheat nucleus 41.36 7.08
TraesCS3A01G321300.2 Wheat nucleus 41.36 6.92
TraesCS3B01G343300.2 Wheat nucleus 41.36 6.9
TraesCS1B01G339200.1 Wheat nucleus 43.18 6.85
KXG22306 Sorghum nucleus 40.0 6.83
TraesCS1A01G325900.1 Wheat nucleus 42.73 6.77
TraesCS1D01G327700.1 Wheat nucleus 42.27 6.7
HORVU3Hr1G075800.5 Barley cytosol, nucleus, plastid 41.36 6.65
HORVU1Hr1G078170.6 Barley cytosol 43.18 6.61
GSMUA_Achr5P03190_001 Banana nucleus 41.82 6.52
Bra009210.1-P Field mustard cytosol 15.0 3.0
Bra005900.1-P Field mustard cytosol 15.0 2.96
Bra038685.1-P Field mustard cytosol 14.55 2.9
Bra028727.1-P Field mustard cytosol 15.0 2.9
Bra001426.1-P Field mustard cytosol 14.55 2.88
Bra034802.1-P Field mustard cytosol 14.09 2.78
Bra019603.1-P Field mustard cytosol 10.45 2.24
Bra017972.1-P Field mustard cytosol 10.0 2.12
Bra007802.1-P Field mustard nucleus, plastid 8.18 1.08
Bra034251.1-P Field mustard nucleus 7.73 1.03
Os12t0597200-01 Rice cytosol, nucleus, plastid 0.0 0.0
Bra041162.1-P Field mustard cytosol, nucleus, plastid 0.0 0.0
Protein Annotations
EnsemblPlants:Bra010174.1EnsemblPlants:Bra010174.1-PEnsemblPlantsGene:Bra010174ncoils:CoilSEG:segUniParc:UPI000253F7E0
UniProt:M4D125MapMan:35.1::::
Description
AT1G04300 (E=1e-027) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT5G43560.2); Has 15192 Blast hits to 9607 proteins in 677 species: Archae - 16; Bacteria - 1260; Metazoa - 5600; Fungi - 1932; Plants - 456; Viruses - 109; Other Eukaryotes - 5819 (source: NCBI BLink).
Coordinates
chrA06:-:20496150..20496983
Molecular Weight (calculated)
25549.0 Da
IEP (calculated)
5.126
GRAVY (calculated)
-0.489
Length
220 amino acids
Sequence
(BLAST)
001: MEDKTRWESL CAFWLGMDQK SRREMSQEKM DVILKLVVKH FYIKKEVTSS LVMDFLFHGL NSLVWSSTTQ EKILHTISRQ MGKLLKDDLD SSILNALEEE
101: PKKERATDVK NLPAPMVSVD KDMFVLVDDA MLLMEKAVLE PLLDESGPQN RMEVGNDGGR EDEKRLTEFA RRTLEVFILD HILCNKVEGA YKEAIALKMQ
201: EELIREEEEN LNKRRVKSTK
Best Arabidopsis Sequence Match ( AT1G04300.5 )
(BLAST)
0001: MDSILGRFRN FQKSLKGSIV AMFLKLAVTN GTWHLFIFLI LISCVTIKSR DVIVEALCCS ICLQCVRYIL IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ
0101: FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP FRCLDCGYRR ELVRVYFQNV EQICRRFVEE
0201: KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD
0301: MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF STKIEVAHQE AIALKRQEEL IREEEEAWLA
0401: ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA QSSAEKPDTL GDVSDISDSV DGSADILQPD
0501: LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL
0601: ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI
0701: STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN
0801: QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA
0901: QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH YMARGPYGTD GMMPRQWQMT NMDLSLPAMR
1001: SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [mitochondrion,golgi,extracellular,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.