Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0923700-04 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G43560.1 | Os01t0923700-04 | AT1G27320.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES01550 | Sorghum | nucleus | 62.24 | 67.02 |
| Os05t0508700-01 | Rice | nucleus | 39.29 | 66.41 |
| TraesCS3D01G310000.1 | Wheat | nucleus | 65.0 | 65.86 |
| TraesCS3B01G343300.2 | Wheat | nucleus | 65.08 | 64.29 |
| TraesCS3A01G321300.2 | Wheat | nucleus | 64.7 | 64.11 |
| HORVU3Hr1G075800.5 | Barley | cytosol, nucleus, plastid | 66.0 | 62.87 |
| PGSC0003DMT400042094 | Potato | cytosol | 19.49 | 62.41 |
| Zm00001d043294_P006 | Maize | nucleus | 59.71 | 60.78 |
| AT5G52330.3 | Thale cress | cytosol | 18.19 | 59.7 |
| Solyc06g053740.2.1 | Tomato | cytosol | 17.96 | 56.25 |
| CDX73257 | Canola | cytosol | 16.12 | 51.72 |
| Bra023279.1-P | Field mustard | cytosol | 13.2 | 49.28 |
| CDX93823 | Canola | cytosol | 14.58 | 49.1 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 35.92 | 43.49 |
| Bra010174.1-P | Field mustard | cytosol | 7.21 | 42.73 |
| CDY26906 | Canola | cytosol | 7.21 | 42.73 |
| KRH31732 | Soybean | nucleus | 36.84 | 42.14 |
| KRH34524 | Soybean | nucleus | 36.76 | 41.98 |
| VIT_05s0020g04980.t01 | Wine grape | nucleus | 36.76 | 41.8 |
| CDY32539 | Canola | nucleus | 31.93 | 41.35 |
| CDY10066 | Canola | nucleus | 32.16 | 41.32 |
| KRG92287 | Soybean | nucleus | 35.99 | 41.14 |
| CDX86642 | Canola | nucleus | 32.85 | 40.96 |
| AT4G16045.1 | Thale cress | cytosol | 11.9 | 40.58 |
| Bra032518.1-P | Field mustard | nucleus | 30.7 | 40.24 |
| CDY01258 | Canola | cytosol | 6.29 | 40.0 |
| CDX89828 | Canola | nucleus | 32.46 | 39.87 |
| Bra015302.1-P | Field mustard | nucleus | 32.31 | 39.72 |
| CDY18218 | Canola | nucleus | 32.23 | 39.7 |
| CDY01264 | Canola | cytosol | 6.22 | 39.51 |
| AT5G43560.1 | Thale cress | nucleus | 31.85 | 39.34 |
| Solyc09g089560.2.1 | Tomato | nucleus | 33.31 | 39.31 |
| KRG90366 | Soybean | endoplasmic reticulum, plasma membrane | 36.91 | 39.17 |
| Solyc06g053750.2.1 | Tomato | nucleus | 34.08 | 39.02 |
| AT1G04300.3 | Thale cress | nucleus | 32.23 | 38.82 |
| Solyc03g005430.2.1 | Tomato | nucleus | 33.38 | 37.86 |
| CDY22344 | Canola | nucleus | 24.48 | 34.41 |
| Bra033684.1-P | Field mustard | nucleus | 24.33 | 34.2 |
| CDX94711 | Canola | nucleus | 24.87 | 33.64 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 36.45 | 33.64 |
| Os12t0597200-01 | Rice | cytosol, nucleus, plastid | 6.52 | 27.51 |
| PGSC0003DMT400042093 | Potato | nucleus | 10.67 | 20.81 |
| Os12t0489100-01 | Rice | cytosol, extracellular, plasma membrane | 7.98 | 18.87 |
| Os12t0489200-01 | Rice | cytosol | 0.46 | 13.95 |
| Os01t0771400-00 | Rice | plasma membrane | 10.36 | 13.24 |
| Os11t0573000-01 | Rice | cytosol, plasma membrane | 2.76 | 12.41 |
| Os07t0163800-01 | Rice | cytosol, plasma membrane | 2.07 | 9.18 |
| Os03t0192800-01 | Rice | nucleus | 2.15 | 9.0 |
| Os03t0192900-01 | Rice | cytosol, nucleus | 0.54 | 7.87 |
| Bra041162.1-P | Field mustard | cytosol, nucleus, plastid | 1.15 | 7.54 |
| Os02t0613400-01 | Rice | extracellular | 1.53 | 6.78 |
Protein Annotations
| EnsemblPlants:Os01t0775300-01 | EnsemblPlantsGene:Os01g0775300 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil | PANTHER:PTHR45001 |
| PFAM:PF00917 | PFscan:PS50144 | ProteinID:BAS74594.1 | SEG:seg | SMART:SM00061 | SUPFAM:SSF49599 |
| UniParc:UPI0000DD8D4F | UniProt:A0A0P0V8S3 | MapMan:22.5.1.6 | : | : | : |
Description
single domain MDC protein 1, single MATH domain containing protein 1MATH domain containing protein. (Os01t0775300-01)
Coordinates
chr1:-:32773565..32783571
Molecular Weight (calculated)
144345.0 Da
IEP (calculated)
8.198
GRAVY (calculated)
-0.665
Length
1303 amino acids
Sequence
(BLAST)
(BLAST)
0001: RRRRRRRRRS RVCSSRSRRR RGGSLCSPSA SGVPAADADP KSGSVRFYDY LMEHDMTVED FIRTNGLGAS GLIETNNQGV STSSVSDCRS CEHVENGSPS
0101: TAPPFWDSDG EDDDPVTSGP RPSDLFGRYT WRIENFSKEK KREMKSEPFE AGGYKWYILV YPQGCDVSNH LSLFLCVANH DKLLPGWSHF AQFTIAVGNL
0201: DPKKVKYSDT LHKFWKKEHD WGWKKFMELS KIQDGFLVDD VLEIIAQVQV IREKVDRPFR CLDRPYRREL LRVYMTNIEQ IYRRFVEERR SKLCKLIEDK
0301: MRWSSFRAFW LAIDQSTRHR MSTEKSDVIL KIIVKHFFVE KEVTSTLVMD SLYTGLKALE CQSKSKSKKG IIDSVDFVEL PVPMVHVDVD MFVLAGDVIA
0401: LLERAALEPL PCQPVSPKDD KCSQSRTKDG SSGEVNKVSI EREERRLTEL GQKIIETFAL SHIFSGIEVA YQEAVALKRQ EELIREEEEA WLLENEMKGK
0501: RGSTTEKDKR AKKKQAKQKK NNRKVKDKDR EEKCDSNFPE RSQDENTIHD REDSKQAGQI SMKVDTSEEG ASDVSDNLDG SIEIQKKHST MENKSLSCSS
0601: ESATMNNAQG KINNLLESKD QISRNRGKAR SRSTSNMNIT EDVDDLPSST TSSDRNTSGC GPAPKLDQET VLLTLKDRLR KLGQRLHEKE IEGRKLLQAH
0701: LEKKAAAESA TGSSSSLSSN SLEETPEVLK SPDQSSVTIS DADINASPSK FGASKEVTPV TPTTILSTEP VPTVASTLSK DEPVLCEDHV SCSTPQIDTP
0801: ITSNPPQVVK TVTLPSGMLL VGHAIQAPSR SPAPQVDRVS KAIAAPTKSP APQVDKVSIA VPTPSKSPAT QGEKVAKAIL VPPKSLAPQV GKVAKTIPTP
0901: KQPAPLVDKV TSLDPVSKQM SSMSNSEARE AILPKKAAVL SVSQTPAISR PSSAPLFQVP RSTLPPTPAV QVPPMLSRSM TLAGRSRNEP SPSVPSYTAQ
1001: TYRNAIIGKS NLDTASASLD HSTSFGQNVA LSQPLSSYAS AASAMVPPVG RNGQLPGKQG FMFGQGKSEA IDNWNPWKGD SNANKYMWKD DSPYHQMTKG
1101: DAHTQSWRDN SYQQAGCSGT GEQGEFGGLQ YRQFQREIPT NLVSYQLPGP VGEEFPHLDI INDLLEEEQS SGSMAEPTLH GYHTLGLPYS SRGNLVDSEV
1201: TSISSSGRLN LADHYYDEGY PMAYDRLNAL YRLREGQNST LDAYSNGRMD SITSKPWLHN FSNPAVNLGV NPNGFSQQMG NYTNLGSGRV NGEHLYRHAN
1301: GQW
0101: TAPPFWDSDG EDDDPVTSGP RPSDLFGRYT WRIENFSKEK KREMKSEPFE AGGYKWYILV YPQGCDVSNH LSLFLCVANH DKLLPGWSHF AQFTIAVGNL
0201: DPKKVKYSDT LHKFWKKEHD WGWKKFMELS KIQDGFLVDD VLEIIAQVQV IREKVDRPFR CLDRPYRREL LRVYMTNIEQ IYRRFVEERR SKLCKLIEDK
0301: MRWSSFRAFW LAIDQSTRHR MSTEKSDVIL KIIVKHFFVE KEVTSTLVMD SLYTGLKALE CQSKSKSKKG IIDSVDFVEL PVPMVHVDVD MFVLAGDVIA
0401: LLERAALEPL PCQPVSPKDD KCSQSRTKDG SSGEVNKVSI EREERRLTEL GQKIIETFAL SHIFSGIEVA YQEAVALKRQ EELIREEEEA WLLENEMKGK
0501: RGSTTEKDKR AKKKQAKQKK NNRKVKDKDR EEKCDSNFPE RSQDENTIHD REDSKQAGQI SMKVDTSEEG ASDVSDNLDG SIEIQKKHST MENKSLSCSS
0601: ESATMNNAQG KINNLLESKD QISRNRGKAR SRSTSNMNIT EDVDDLPSST TSSDRNTSGC GPAPKLDQET VLLTLKDRLR KLGQRLHEKE IEGRKLLQAH
0701: LEKKAAAESA TGSSSSLSSN SLEETPEVLK SPDQSSVTIS DADINASPSK FGASKEVTPV TPTTILSTEP VPTVASTLSK DEPVLCEDHV SCSTPQIDTP
0801: ITSNPPQVVK TVTLPSGMLL VGHAIQAPSR SPAPQVDRVS KAIAAPTKSP APQVDKVSIA VPTPSKSPAT QGEKVAKAIL VPPKSLAPQV GKVAKTIPTP
0901: KQPAPLVDKV TSLDPVSKQM SSMSNSEARE AILPKKAAVL SVSQTPAISR PSSAPLFQVP RSTLPPTPAV QVPPMLSRSM TLAGRSRNEP SPSVPSYTAQ
1001: TYRNAIIGKS NLDTASASLD HSTSFGQNVA LSQPLSSYAS AASAMVPPVG RNGQLPGKQG FMFGQGKSEA IDNWNPWKGD SNANKYMWKD DSPYHQMTKG
1101: DAHTQSWRDN SYQQAGCSGT GEQGEFGGLQ YRQFQREIPT NLVSYQLPGP VGEEFPHLDI INDLLEEEQS SGSMAEPTLH GYHTLGLPYS SRGNLVDSEV
1201: TSISSSGRLN LADHYYDEGY PMAYDRLNAL YRLREGQNST LDAYSNGRMD SITSKPWLHN FSNPAVNLGV NPNGFSQQMG NYTNLGSGRV NGEHLYRHAN
1301: GQW
0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.