Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P15980_001 | |
| GSMUA_AchrUn_... | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G43560.1 | GSMUA_Achr4P15980_001 | AT1G27320.1 | 18642946 |
| AT5G43560.1 | GSMUA_AchrUn_... | AT1G27320.1 | 18642946 |
| AT5G43560.1 | GSMUA_AchrUn_... | AT1G27320.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P12590_001 | Banana | nucleus | 57.65 | 75.65 |
| PGSC0003DMT400042094 | Potato | cytosol | 18.98 | 65.85 |
| OQU79503 | Sorghum | nucleus | 20.96 | 65.34 |
| Zm00001d030958_P001 | Maize | nucleus | 20.04 | 62.06 |
| Solyc06g053740.2.1 | Tomato | cytosol | 18.06 | 61.3 |
| AT5G52330.3 | Thale cress | cytosol | 16.93 | 60.2 |
| VIT_05s0020g04980.t01 | Wine grape | nucleus | 43.06 | 53.05 |
| KRH34524 | Soybean | nucleus | 41.86 | 51.8 |
| KRH31732 | Soybean | nucleus | 41.36 | 51.27 |
| CDX73257 | Canola | cytosol | 14.73 | 51.23 |
| KRG92287 | Soybean | nucleus | 40.86 | 50.61 |
| TraesCS5B01G071600.1 | Wheat | nucleus | 39.59 | 49.82 |
| EES16279 | Sorghum | nucleus | 39.52 | 49.73 |
| HORVU5Hr1G016190.3 | Barley | nucleus | 39.45 | 49.6 |
| TraesCS5D01G072000.1 | Wheat | nucleus | 39.31 | 49.42 |
| TraesCS5A01G060400.1 | Wheat | nucleus | 39.31 | 49.42 |
| Zm00001d030960_P003 | Maize | nucleus | 39.02 | 49.02 |
| Zm00001d041395_P002 | Maize | nucleus | 37.96 | 48.24 |
| Os05t0508700-01 | Rice | nucleus | 26.2 | 47.99 |
| KRG90366 | Soybean | endoplasmic reticulum, plasma membrane | 41.64 | 47.88 |
| CDX93823 | Canola | cytosol | 12.89 | 47.03 |
| Bra023279.1-P | Field mustard | cytosol | 11.54 | 46.7 |
| Solyc03g005430.2.1 | Tomato | nucleus | 37.68 | 46.3 |
| Solyc09g089560.2.1 | Tomato | nucleus | 35.55 | 45.47 |
| CDY10066 | Canola | nucleus | 32.65 | 45.46 |
| CDY32539 | Canola | nucleus | 32.08 | 45.03 |
| Solyc06g053750.2.1 | Tomato | nucleus | 36.26 | 44.99 |
| AT5G43560.1 | Thale cress | nucleus | 33.43 | 44.74 |
| CDY18218 | Canola | nucleus | 33.43 | 44.61 |
| CDX89828 | Canola | nucleus | 33.5 | 44.58 |
| Bra015302.1-P | Field mustard | nucleus | 33.43 | 44.53 |
| CDX86642 | Canola | nucleus | 32.93 | 44.5 |
| Bra032518.1-P | Field mustard | nucleus | 30.88 | 43.86 |
| AT1G04300.3 | Thale cress | nucleus | 33.07 | 43.16 |
| CDY26906 | Canola | cytosol | 6.52 | 41.82 |
| Bra010174.1-P | Field mustard | cytosol | 6.52 | 41.82 |
| Os12t0597200-01 | Rice | cytosol, nucleus, plastid | 8.78 | 40.13 |
| AT4G16045.1 | Thale cress | cytosol | 10.84 | 40.05 |
| EES01550 | Sorghum | nucleus | 32.44 | 37.85 |
| CDY01258 | Canola | cytosol | 5.45 | 37.56 |
| CDY22344 | Canola | nucleus | 24.43 | 37.22 |
| CDY01264 | Canola | cytosol | 5.38 | 37.07 |
| CDX94711 | Canola | nucleus | 25.21 | 36.97 |
| Bra033684.1-P | Field mustard | nucleus | 24.22 | 36.89 |
| KXG22306 | Sorghum | nucleus | 33.29 | 36.49 |
| Os01t0775300-01 | Rice | cytosol, mitochondrion, nucleus | 33.64 | 36.45 |
| Zm00001d038655_P003 | Maize | nucleus | 33.22 | 36.08 |
| TraesCS3D01G310000.1 | Wheat | nucleus | 32.58 | 35.77 |
| TraesCS1A01G325900.1 | Wheat | nucleus | 35.06 | 35.66 |
| TraesCS3A01G321300.2 | Wheat | nucleus | 33.14 | 35.59 |
| TraesCS1B01G339200.1 | Wheat | nucleus | 34.91 | 35.57 |
| TraesCS1D01G327700.1 | Wheat | nucleus | 34.91 | 35.52 |
| TraesCS3B01G343300.2 | Wheat | nucleus | 33.07 | 35.41 |
| Zm00001d043294_P006 | Maize | nucleus | 31.8 | 35.08 |
| HORVU1Hr1G078170.6 | Barley | cytosol | 35.27 | 34.63 |
| HORVU3Hr1G075800.5 | Barley | cytosol, nucleus, plastid | 32.65 | 33.7 |
| Zm00001d010716_P002 | Maize | nucleus | 30.52 | 32.75 |
| PGSC0003DMT400042093 | Potato | nucleus | 13.74 | 29.04 |
| GSMUA_Achr6P14230_001 | Banana | cytosol | 4.18 | 27.06 |
| GSMUA_Achr10P... | Banana | cytosol | 12.32 | 15.61 |
| GSMUA_Achr4P28400_001 | Banana | cytosol | 11.76 | 14.89 |
| GSMUA_Achr5P02720_001 | Banana | cytosol | 11.69 | 14.8 |
| GSMUA_Achr4P22710_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 11.33 | 13.9 |
| GSMUA_Achr6P03040_001 | Banana | nucleus | 2.9 | 9.05 |
| GSMUA_Achr11P... | Banana | nucleus | 6.23 | 8.06 |
| GSMUA_Achr5P23550_001 | Banana | plastid | 5.67 | 6.09 |
| GSMUA_Achr6P03030_001 | Banana | cytosol, nucleus, plastid | 2.9 | 4.88 |
| Bra041162.1-P | Field mustard | cytosol, nucleus, plastid | 0.64 | 4.52 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:22.5.1.6 | Gene3D:3.30.310.210 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSMUA_Achr5G03190_001 | EnsemblPlants:GSMUA_Achr5P03190_001 | EnsemblPlants:GSMUA_Achr5T03190_001 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:IPR036612 | InterPro:KH_dom | InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf |
| UniProt:M0SV98 | InterPro:MATH/TRAF_dom | PFAM:PF00013 | PFAM:PF00917 | PFscan:PS50084 | PFscan:PS50144 |
| SMART:SM00061 | SMART:SM00322 | SUPFAM:SSF49599 | SUPFAM:SSF54791 | InterPro:TRAF-like | UniParc:UPI0002962BBA |
| SEG:seg | : | : | : | : | : |
Description
Putative MATH domain-containing protein At5g43560 [Source:GMGC_GENE;Acc:GSMUA_Achr5G03190_001]
Coordinates
chr5:+:2161319..2185578
Molecular Weight (calculated)
156679.0 Da
IEP (calculated)
6.627
GRAVY (calculated)
-0.634
Length
1412 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAGTITEDHG MSLRYSATEG MLSEQRCLSG DSITEWRSRE QFENGAPSTS PPYWDTDDDD DCGPKPSELY GKHTWKIENF STINKRELRG DAFEIGGYKW
0101: FILVYPQGCD VCNHLSLFLS VANHEKLLPG WSHFAQFTIA VVNKDPKKSK YSDTLHRFWK KEHDWGWKKF MELSKVYDGF VVADTLVIKA QVQVIREKAD
0201: RPFRCLDCQY RRELVRVYLS NVEQICRHFL EERIGKLSKF VEDKVRWPSF RAFWSETDPN ARQHMSRDKT DAILKVAVKH FFIEKEVTST LIMDSLYSGL
0301: KALEFQSKNM NGRDKSVDLE ELPAPMVHVD KDLFVLADDV IVLIERVVSD SLSHQPLPSK DDKCLQNRIK DGSSGDEFNK ASIERDERRL MELGRRTIEI
0401: FVLVHIFSRI EVSYQEAVAL KRQEELIREE EAAGQAENEL KSKRGVTEKE KRAKKKQAKQ KRNSRKGKER GKDERCNQVP ERLQQETPSE ERISDSFLQQ
0501: EIPSVERISD SFPSERVELV TEKIGTLEDA SDVSDTGDDV IEVLQPGSND RDSSPSNWDI DTSETHLAAE ASVSDVQNGQ SEKRSQSAMD DSSSTCSTDS
0601: VPSVTMSGPY KGSTLQSNNN IQSRNRGKGR NEETHERMGL TNGGHIPRSE TTLVDGHSHD VTGSKVSRPE SEASVFSLKG EMQRLEKNLA EKEEVSLQKK
0701: LTPNDQVDSE KHSSSPSLGK KISNIPQQPK QLSVITTSVA VSTTATISVE PTSSKEQPSS STAQTDKVPA IASRSPPIVS SIHSEALKQN TQAKINGPHQ
0801: FNATSRPYSA PLIPAPRPTV PIPSAVQAVP LLSRSVSAAG RLGNDPSPTA PSFVPQSYRN AIIGKRGSCL NDDTTSCSQS VAYSHSPSMF LSSTSMLPPQ
0901: TPTRMDHPSL RHGLTFGCLK PEVVHSQHLG RDDSYHESSS SSSQSFGSSL GDNMGKLNVY GKSLAQKYPA ESASRVTPYH VQGTVGDEFP HLDIINDLLD
1001: DEQNVGRTAR SPQYAFSRQF SFPGNLSSAD TGSLGSSGQF EQLDQYYDEG FHRGYGASNN PPEGLRDGRM QQMDLLAYAN RQFDGLMRNQ QPYGITDLSM
1101: LGLRDADVNG YSYQLQDYFA RGGNGYLPHV CLVRAPVTQP QTQTQTPKPN ATEINTTVPS LSNPSFLRRR PSPSSLSFSY SRIRPPRRRI CYGRSSIGRI
1201: SSLEALIQHT MDGLPENIVE EEVAVETENS HETKQEHDDL TATEAGEKKW PGWPGESVFR ILVPAHKVGG LIGRKGEFIK KLCEESRARI KILEGPPGVA
1301: ERAVMISAKE EPDASIPPAM DALLRVHKWI IDGLDGESGR APPGSDNTVS TRLLVSATQA GSLIGKQGAT IKAIQEASSA TARVLASRSI FVSFATYSYL
1401: CLLVLCCPSS SH
0101: FILVYPQGCD VCNHLSLFLS VANHEKLLPG WSHFAQFTIA VVNKDPKKSK YSDTLHRFWK KEHDWGWKKF MELSKVYDGF VVADTLVIKA QVQVIREKAD
0201: RPFRCLDCQY RRELVRVYLS NVEQICRHFL EERIGKLSKF VEDKVRWPSF RAFWSETDPN ARQHMSRDKT DAILKVAVKH FFIEKEVTST LIMDSLYSGL
0301: KALEFQSKNM NGRDKSVDLE ELPAPMVHVD KDLFVLADDV IVLIERVVSD SLSHQPLPSK DDKCLQNRIK DGSSGDEFNK ASIERDERRL MELGRRTIEI
0401: FVLVHIFSRI EVSYQEAVAL KRQEELIREE EAAGQAENEL KSKRGVTEKE KRAKKKQAKQ KRNSRKGKER GKDERCNQVP ERLQQETPSE ERISDSFLQQ
0501: EIPSVERISD SFPSERVELV TEKIGTLEDA SDVSDTGDDV IEVLQPGSND RDSSPSNWDI DTSETHLAAE ASVSDVQNGQ SEKRSQSAMD DSSSTCSTDS
0601: VPSVTMSGPY KGSTLQSNNN IQSRNRGKGR NEETHERMGL TNGGHIPRSE TTLVDGHSHD VTGSKVSRPE SEASVFSLKG EMQRLEKNLA EKEEVSLQKK
0701: LTPNDQVDSE KHSSSPSLGK KISNIPQQPK QLSVITTSVA VSTTATISVE PTSSKEQPSS STAQTDKVPA IASRSPPIVS SIHSEALKQN TQAKINGPHQ
0801: FNATSRPYSA PLIPAPRPTV PIPSAVQAVP LLSRSVSAAG RLGNDPSPTA PSFVPQSYRN AIIGKRGSCL NDDTTSCSQS VAYSHSPSMF LSSTSMLPPQ
0901: TPTRMDHPSL RHGLTFGCLK PEVVHSQHLG RDDSYHESSS SSSQSFGSSL GDNMGKLNVY GKSLAQKYPA ESASRVTPYH VQGTVGDEFP HLDIINDLLD
1001: DEQNVGRTAR SPQYAFSRQF SFPGNLSSAD TGSLGSSGQF EQLDQYYDEG FHRGYGASNN PPEGLRDGRM QQMDLLAYAN RQFDGLMRNQ QPYGITDLSM
1101: LGLRDADVNG YSYQLQDYFA RGGNGYLPHV CLVRAPVTQP QTQTQTPKPN ATEINTTVPS LSNPSFLRRR PSPSSLSFSY SRIRPPRRRI CYGRSSIGRI
1201: SSLEALIQHT MDGLPENIVE EEVAVETENS HETKQEHDDL TATEAGEKKW PGWPGESVFR ILVPAHKVGG LIGRKGEFIK KLCEESRARI KILEGPPGVA
1301: ERAVMISAKE EPDASIPPAM DALLRVHKWI IDGLDGESGR APPGSDNTVS TRLLVSATQA GSLIGKQGAT IKAIQEASSA TARVLASRSI FVSFATYSYL
1401: CLLVLCCPSS SH
0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.