Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P28400_001 | Banana | cytosol | 94.26 | 94.26 |
| GSMUA_Achr4P22710_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 94.26 | 91.31 |
| Os12t0489200-01 | Rice | cytosol | 3.5 | 90.7 |
| VIT_13s0073g00610.t01 | Wine grape | cytosol | 88.25 | 88.25 |
| EES15989 | Sorghum | cytosol | 87.8 | 87.25 |
| GSMUA_Achr10P... | Banana | cytosol | 87.0 | 87.0 |
| Os12t0489100-01 | Rice | cytosol, extracellular, plasma membrane | 42.69 | 86.39 |
| HORVU5Hr1G031980.4 | Barley | cytosol | 86.28 | 85.89 |
| VIT_06s0009g00960.t01 | Wine grape | cytosol | 85.92 | 85.84 |
| TraesCS5A01G105900.1 | Wheat | cytosol | 85.92 | 85.61 |
| TraesCS5B01G111000.7 | Wheat | cytosol | 86.28 | 85.36 |
| TraesCS5D01G123300.4 | Wheat | cytosol | 86.1 | 85.18 |
| TraesCS4D01G165800.1 | Wheat | unclear | 85.38 | 85.08 |
| EES09985 | Sorghum | cytosol | 85.02 | 84.79 |
| TraesCS4A01G163000.1 | Wheat | cytosol | 84.84 | 84.69 |
| Solyc11g006320.1.1 | Tomato | cytosol | 83.41 | 83.26 |
| Zm00001d041035_P002 | Maize | cytosol | 83.86 | 82.09 |
| Solyc05g055090.2.1 | Tomato | cytosol | 81.52 | 81.23 |
| Zm00001d023640_P004 | Maize | cytosol | 81.79 | 80.57 |
| HORVU4Hr1G034950.2 | Barley | cytosol | 78.3 | 78.09 |
| Zm00001d052943_P023 | Maize | plastid | 74.26 | 61.84 |
| GSMUA_Achr6P14230_001 | Banana | cytosol | 9.24 | 47.25 |
| GSMUA_Achr11P... | Banana | nucleus | 16.14 | 16.48 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 14.89 | 15.43 |
| GSMUA_Achr6P03040_001 | Banana | nucleus | 4.93 | 12.14 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 14.8 | 11.69 |
| GSMUA_Achr5P23550_001 | Banana | plastid | 10.49 | 8.9 |
| GSMUA_Achr6P03030_001 | Banana | cytosol, nucleus, plastid | 5.74 | 7.61 |
Protein Annotations
| MapMan:14.6.2.3 | MapMan:19.2.3.1.1.5 | Gene3D:2.60.210.10 | Gene3D:3.10.20.90 | Gene3D:3.90.70.10 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0006511 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016579 | GO:GO:0016787 |
| GO:GO:0019538 | GO:GO:0036459 | EnsemblPlantsGene:GSMUA_Achr5G02720_001 | EnsemblPlants:GSMUA_Achr5P02720_001 | EnsemblPlants:GSMUA_Achr5T02720_001 | InterPro:IPR002083 |
| InterPro:IPR008974 | InterPro:IPR028889 | UniProt:M0SV51 | InterPro:MATH/TRAF_dom | PFAM:PF00443 | PFAM:PF00917 |
| PFAM:PF12436 | PFAM:PF14533 | ScanProsite:PS00972 | ScanProsite:PS00973 | PFscan:PS50144 | PFscan:PS50235 |
| PANTHER:PTHR24006 | PANTHER:PTHR24006:SF577 | InterPro:Papain_like_cys_pep_sf | InterPro:Peptidase_C19_UCH | SMART:SM00061 | SUPFAM:SSF49599 |
| SUPFAM:SSF54001 | InterPro:TRAF-like | UniParc:UPI0002967343 | InterPro:USP7_ICP0-binding_dom | InterPro:USP_C | InterPro:USP_CS |
| InterPro:USP_dom | SEG:seg | : | : | : | : |
Description
Ubiquitin carboxyl-terminal hydrolase 13 [Source:GMGC_GENE;Acc:GSMUA_Achr5G02720_001]
Coordinates
chr5:-:1751698..1769602
Molecular Weight (calculated)
131166.0 Da
IEP (calculated)
5.946
GRAVY (calculated)
-0.674
Length
1115 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTMMTPPPLE QEDEEMLVPH QEFTEGPQPM EVIPTETASA PENQQVEDPP SFKFRWTIEN FSRLNVKKLY SDIFYVGAYK WRVLIFPKGN NVDHLSIYLD
0101: VADSTTLPYG WSRYAQFSLA VVNQIHGKYT VRKETQHQFN SRESDWGFTS FMSLSELYDP SRGYLVNDTC VIEAEVTVRK MVDYWSYDSK KETGYVGLKN
0201: QGATCYMNSL LQTLYHIPYF RKAVYHMPTT ENDMPSGSIP LALQSLFYKL QYSDNSVATK ELTKSFGWDT YDSFMQHDVQ ELNRVLCEKL EDKMKGTVVE
0301: GTIQHLFEGH HMNYIECINV DYKSTRKESF YDLQLDVKGC RDVYASFDKY VEVERLEGDN KYHAENYGLQ DAKKGVLFID FPPVLQLQLK RFEYDFMRDT
0401: MVKINDRYEF PLQLDLDRDN GKYLSPEADR RVRNLYTLHS VLVHSGGVHG GHYYAFIRPT LSDQWFKFDD ERVTKEDAKR ALEEQYGGEE ELPQTNPGFN
0501: NPPFKFTKYS NAYMLVYIRE SDKEKIMCNV DEKDIAEHLR VRLKKEQEEK EHKKKEKAEA HLYTIIKVAR NEDLAEQIGR EIFFDLVDHD KVRSFRIQKQ
0601: LPFSHFKEEV AKEFGIPVQF QRFWLWAKRQ NHTYRPNRPL TPQEEVQSVG QLREVSNKAH NAELKLFLEI ELGPDLRPLP PPQKTKEDIL LFFKLYDPEK
0701: EDLRFVGRLF VKALGKPTEI LLKLNEMAGF SPNEEIELYE EIKFEPNVMC EHIDKRISFR SSQLEDGDII CYQRASALQN GDQYRYPDVP SFLEYVRNRQ
0801: VVHFRSLEKP KEDDFSLELS KLSTYDDVVE RVARQLGLDD PSKIRLTSHN CYSQQPKPQP IKFRGLEHLS EMLVHYNQTS DILYYEVLDI PLPELQGLKT
0901: LKVAFHHATK DEVAVHSIRL PKNSTVADVI NDLKTKVELS HPDAELRLLE VFYHKIYKIF PPGEKIENIN DQYWTLRAEE IPEEEKNLGP HDRLIHVYHF
1001: TRDPNQNQMQ VQNFGEPFFL VIREGETLAD VKIRIQKKLQ VPDEEFSKWK LAFISLGRPE YLQDSDIVSN RFQRRDIYGA WEQYLGLEHS DTAPKRAYTA
1101: NQNRHTFEKP VKIYN
0101: VADSTTLPYG WSRYAQFSLA VVNQIHGKYT VRKETQHQFN SRESDWGFTS FMSLSELYDP SRGYLVNDTC VIEAEVTVRK MVDYWSYDSK KETGYVGLKN
0201: QGATCYMNSL LQTLYHIPYF RKAVYHMPTT ENDMPSGSIP LALQSLFYKL QYSDNSVATK ELTKSFGWDT YDSFMQHDVQ ELNRVLCEKL EDKMKGTVVE
0301: GTIQHLFEGH HMNYIECINV DYKSTRKESF YDLQLDVKGC RDVYASFDKY VEVERLEGDN KYHAENYGLQ DAKKGVLFID FPPVLQLQLK RFEYDFMRDT
0401: MVKINDRYEF PLQLDLDRDN GKYLSPEADR RVRNLYTLHS VLVHSGGVHG GHYYAFIRPT LSDQWFKFDD ERVTKEDAKR ALEEQYGGEE ELPQTNPGFN
0501: NPPFKFTKYS NAYMLVYIRE SDKEKIMCNV DEKDIAEHLR VRLKKEQEEK EHKKKEKAEA HLYTIIKVAR NEDLAEQIGR EIFFDLVDHD KVRSFRIQKQ
0601: LPFSHFKEEV AKEFGIPVQF QRFWLWAKRQ NHTYRPNRPL TPQEEVQSVG QLREVSNKAH NAELKLFLEI ELGPDLRPLP PPQKTKEDIL LFFKLYDPEK
0701: EDLRFVGRLF VKALGKPTEI LLKLNEMAGF SPNEEIELYE EIKFEPNVMC EHIDKRISFR SSQLEDGDII CYQRASALQN GDQYRYPDVP SFLEYVRNRQ
0801: VVHFRSLEKP KEDDFSLELS KLSTYDDVVE RVARQLGLDD PSKIRLTSHN CYSQQPKPQP IKFRGLEHLS EMLVHYNQTS DILYYEVLDI PLPELQGLKT
0901: LKVAFHHATK DEVAVHSIRL PKNSTVADVI NDLKTKVELS HPDAELRLLE VFYHKIYKIF PPGEKIENIN DQYWTLRAEE IPEEEKNLGP HDRLIHVYHF
1001: TRDPNQNQMQ VQNFGEPFFL VIREGETLAD VKIRIQKKLQ VPDEEFSKWK LAFISLGRPE YLQDSDIVSN RFQRRDIYGA WEQYLGLEHS DTAPKRAYTA
1101: NQNRHTFEKP VKIYN
0001: MTMMTPPPLD QEDEEMLVPN PDLVEGPQPM EVAQTDPAAT AVENPPPEDP PSLKFTWTIP MFTRLNTRKH YSDVFVVGGY KWRILIFPKG NNVDHLSMYL
0101: DVADAANLPY GWSRYSQFSL AVVNQVNNRY SIRKETQHQF NARESDWGFT SFMPLSELYE PTRGYLVNDT VLIEAEVAVR KVLDYWSYDS KKETGFVGLK
0201: NQGATCYMNS LLQTLYHIPY FRKAVYHMPT TENDAPTASI PLALQSLFYK LQYNDTSVAT KELTKSFGWD TYDSFMQHDV QELNRVLCEK LEDKMKGTVV
0301: EGTIQKLFEG HHMNYIECIN VDYKSTRKES FYDLQLDVKG CKDVYASFDK YVEVERLEGD NKYHAEGHDL QDAKKGVLFI DFPPVLQLQL KRFEYDFMRD
0401: TMVKINDRYE FPLQLDLDRE DGRYLSPDAD KSVRNLYTLH SVLVHSGGVH GGHYYAFIRP TLSDQWYKFD DERVTKEDVK RALEEQYGGE EELPQNNPGF
0501: NNPPFKFTKY SNAYMLVYIR ESDKDKIICN VDEKDIAEHL RVRLKKEQEE KEDKRKYKAQ AHLFTTIKVA RDDDITEQIG KNIYFDLVDH EKVRSFRIQK
0601: QTPFQQFKEE VAKEFGVPVQ LQRFWIWAKR QNHTYRPNRP LSPNEELQTV GQIREASNKA NNAELKLFLE IERGPDDLPI PPPEKTSEDI LLFFKLYDPE
0701: NAVLRYVGRL MVKSSSKPMD IVGQLNKMAG FAPDEEIELF EEIKFEPCVM CEQIDKKTSF RLCQIEDGDI ICYQKPLSIE ESEFRYPDVP SFLEYVQNRE
0801: LVRFRTLEKP KEDEFTMELS KLHTYDDVVE RVAEKLGLDD PSKLRLTSHN CYSQQPKPQP IKYRGVDHLS DMLVHYNQTS DILYYEVLDI PLPELQGLKT
0901: LKVAFHSATK DEVIIHNIRL PKQSTVGDVI NELKTKVELS HQDAELRLLE VFFHKIYKIF PSTERIENIN DQYWTLRAEE IPEEEKNIGP NDRLIHVYHF
1001: TKEAGQNQQV QNFGEPFFLV IHEGETLEEI KTRIQKKLHV PDEDFAKWKF ASFSMGRPDY LLDTDVVYNR FQRRDVYGAW EQYLGLEHID NAPKRAYAAN
1101: QNRHAYEKPV KIYN
0101: DVADAANLPY GWSRYSQFSL AVVNQVNNRY SIRKETQHQF NARESDWGFT SFMPLSELYE PTRGYLVNDT VLIEAEVAVR KVLDYWSYDS KKETGFVGLK
0201: NQGATCYMNS LLQTLYHIPY FRKAVYHMPT TENDAPTASI PLALQSLFYK LQYNDTSVAT KELTKSFGWD TYDSFMQHDV QELNRVLCEK LEDKMKGTVV
0301: EGTIQKLFEG HHMNYIECIN VDYKSTRKES FYDLQLDVKG CKDVYASFDK YVEVERLEGD NKYHAEGHDL QDAKKGVLFI DFPPVLQLQL KRFEYDFMRD
0401: TMVKINDRYE FPLQLDLDRE DGRYLSPDAD KSVRNLYTLH SVLVHSGGVH GGHYYAFIRP TLSDQWYKFD DERVTKEDVK RALEEQYGGE EELPQNNPGF
0501: NNPPFKFTKY SNAYMLVYIR ESDKDKIICN VDEKDIAEHL RVRLKKEQEE KEDKRKYKAQ AHLFTTIKVA RDDDITEQIG KNIYFDLVDH EKVRSFRIQK
0601: QTPFQQFKEE VAKEFGVPVQ LQRFWIWAKR QNHTYRPNRP LSPNEELQTV GQIREASNKA NNAELKLFLE IERGPDDLPI PPPEKTSEDI LLFFKLYDPE
0701: NAVLRYVGRL MVKSSSKPMD IVGQLNKMAG FAPDEEIELF EEIKFEPCVM CEQIDKKTSF RLCQIEDGDI ICYQKPLSIE ESEFRYPDVP SFLEYVQNRE
0801: LVRFRTLEKP KEDEFTMELS KLHTYDDVVE RVAEKLGLDD PSKLRLTSHN CYSQQPKPQP IKYRGVDHLS DMLVHYNQTS DILYYEVLDI PLPELQGLKT
0901: LKVAFHSATK DEVIIHNIRL PKQSTVGDVI NELKTKVELS HQDAELRLLE VFFHKIYKIF PSTERIENIN DQYWTLRAEE IPEEEKNIGP NDRLIHVYHF
1001: TKEAGQNQQV QNFGEPFFLV IHEGETLEEI KTRIQKKLHV PDEDFAKWKF ASFSMGRPDY LLDTDVVYNR FQRRDVYGAW EQYLGLEHID NAPKRAYAAN
1101: QNRHAYEKPV KIYN
Arabidopsis Description
UBP13UBP13 [Source:UniProtKB/TrEMBL;Acc:A0A178VEE0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.