Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_13s0073g00610.t01 | Wine grape | cytosol | 85.43 | 85.74 |
| Solyc11g006320.1.1 | Tomato | cytosol | 85.43 | 85.59 |
| Os12t0489200-01 | Rice | cytosol | 3.22 | 83.72 |
| GSMUA_Achr5P02720_001 | Banana | cytosol | 81.23 | 81.52 |
| Solyc10g081610.1.1 | Tomato | cytosol, extracellular, nucleus | 80.61 | 80.39 |
| GSMUA_Achr10P... | Banana | cytosol | 79.98 | 80.27 |
| Solyc11g071700.1.1 | Tomato | cytosol, plastid | 79.54 | 80.11 |
| GSMUA_Achr4P28400_001 | Banana | cytosol | 79.71 | 80.0 |
| Os12t0489100-01 | Rice | cytosol, extracellular, plasma membrane | 39.32 | 79.85 |
| EES15989 | Sorghum | cytosol | 79.62 | 79.41 |
| TraesCS5A01G105900.1 | Wheat | cytosol | 79.27 | 79.27 |
| HORVU5Hr1G031980.4 | Barley | cytosol | 79.27 | 79.2 |
| TraesCS5B01G111000.7 | Wheat | cytosol | 79.71 | 79.15 |
| TraesCS5D01G123300.4 | Wheat | cytosol | 79.54 | 78.97 |
| TraesCS4D01G165800.1 | Wheat | unclear | 78.73 | 78.73 |
| EES09985 | Sorghum | cytosol | 78.64 | 78.71 |
| TraesCS4A01G163000.1 | Wheat | cytosol | 78.28 | 78.42 |
| GSMUA_Achr4P22710_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 80.34 | 78.11 |
| Zm00001d041035_P002 | Maize | cytosol | 76.05 | 74.71 |
| Zm00001d023640_P004 | Maize | cytosol | 74.44 | 73.59 |
| HORVU4Hr1G034950.2 | Barley | cytosol | 73.19 | 73.26 |
| Solyc06g073820.1.1 | Tomato | cytosol | 66.04 | 65.11 |
| Zm00001d052943_P023 | Maize | plastid | 68.45 | 57.21 |
| Solyc05g055100.1.1 | Tomato | endoplasmic reticulum | 22.16 | 35.08 |
| Solyc06g053740.2.1 | Tomato | cytosol | 8.58 | 23.08 |
| Solyc03g078390.2.1 | Tomato | nucleus | 15.46 | 15.86 |
| Solyc09g089560.2.1 | Tomato | nucleus | 15.28 | 15.49 |
| Solyc06g053750.2.1 | Tomato | nucleus | 15.37 | 15.11 |
| Solyc03g005430.2.1 | Tomato | nucleus | 15.28 | 14.88 |
| Solyc06g017970.2.1 | Tomato | nucleus | 15.91 | 10.53 |
Protein Annotations
| MapMan:14.6.2.3 | MapMan:19.2.3.1.1.5 | Gene3D:2.60.210.10 | Gene3D:3.10.20.90 | Gene3D:3.90.70.10 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0006511 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016579 | GO:GO:0016787 |
| GO:GO:0019538 | GO:GO:0036459 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:IPR028889 | UniProt:K4C2I6 |
| InterPro:MATH/TRAF_dom | PFAM:PF00443 | PFAM:PF00917 | PFAM:PF12436 | PFAM:PF14533 | ScanProsite:PS00972 |
| ScanProsite:PS00973 | PFscan:PS50144 | PFscan:PS50235 | PANTHER:PTHR24006 | PANTHER:PTHR24006:SF565 | InterPro:Papain_like_cys_pep_sf |
| InterPro:Peptidase_C19_UCH | SMART:SM00061 | SUPFAM:SSF49599 | SUPFAM:SSF54001 | EnsemblPlantsGene:Solyc05g055090.2 | EnsemblPlants:Solyc05g055090.2.1 |
| InterPro:TRAF-like | UniParc:UPI0002766EA7 | InterPro:USP7_ICP0-binding_dom | InterPro:USP_C | InterPro:USP_CS | InterPro:USP_dom |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr5:-:64872981..64891184
Molecular Weight (calculated)
131074.0 Da
IEP (calculated)
5.842
GRAVY (calculated)
-0.639
Length
1119 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTLLTPPPVD PEDHEMLVPS SDFPTEGPLP VEVLAGAPAD TTNTVDAQAV DDPASARFTW TVEKFSRLNV KKLYSDPFNV GGFKWRILIF PKGNNADHLS
0101: MYLDVADAAT LPYGWSRFAQ FSLAVINRMN NKLTVKKDTQ HQFNARESDW GFTSFMPLSE LYDPGKGYLM DDTVIIEADV AVRKVADYWS HDSKKETGYV
0201: GLKNQGATCY MNSLLQTLYH IPYFRKAVYH MPTTENDNPS GSIPLALQSL FYKLQYNDTS VATKELTKSF GWDTYESFMQ HDVQELNRVL CEKLEDKMKG
0301: TVVEGTIQQL LEGHHMNYIE CIRVDYKSTR KESFYDLQLD VKGCRDVYAS FDKYVEVERL EGDNKYQAEQ HGLQDARKGV LFIDFPPVLQ LQLKRFEYDF
0401: VRDAMIKIND RYEFPLQLDL DRENGKYLSP DADRSVRNLY SLHSVLVHSG GVHGGHYYAY IRPTLSDQWY KFDDERVTKE DTKRALDEQY GGEEELPHTN
0501: PGFNNSPFKF TKYSNAYMLV YIRESDKEKI ICDVDEKDIA EHLRIRLKKE QEEKEQKRKE KAEAHLYTII KVARDEDLGE QIGKEIYFDL VDHDKVHSFR
0601: IQKQMPFAQF KEEVAKEFGI PVQFQRYWLW AKRQNHTYRP NRPLTAQEEL QSVGQLREVS NKANHAELKL FLEVEFGLDL QPLPPLEKTK DDILLFFKLY
0701: DPSKEEIRYV GRIFVKGSGK PLEILAKLNE LAGFLPDEEI ELFEEIKFEP NVMCEHINMN LSFRGCQLED GDIICFQKSL RKQGNEQYRF PEVPSFLEYV
0801: HNRQIVRFRS LEKPKEDEFS LELSKQNNYD EVVECLARHL RLDDPSRVRL TPHNCYSQQP KPQPIRYRGV DRLTEMLSHY NQTSDVLYYE VLDIPLPELQ
0901: GLKTLKVTFH HSAKDEVTIH TIRLPKQSTI ADVLNDLKTK VELSRPDAEL RLLEVFYHKI YKIFPLNERI ENINDQYWTL RAEEIPEEEK NLGAHSRLIH
1001: VYHFIKEATQ NQTQVLNFGE PFFLVIHEGE TLTEVKARIQ KKLQVPDEEF SKWKFAFLSM GRPEYLEESD IIFNRFQKRD VYGAWEQYLG LEHTDCPPKR
1101: SYSAHQNRHN FEKPVRIYN
0101: MYLDVADAAT LPYGWSRFAQ FSLAVINRMN NKLTVKKDTQ HQFNARESDW GFTSFMPLSE LYDPGKGYLM DDTVIIEADV AVRKVADYWS HDSKKETGYV
0201: GLKNQGATCY MNSLLQTLYH IPYFRKAVYH MPTTENDNPS GSIPLALQSL FYKLQYNDTS VATKELTKSF GWDTYESFMQ HDVQELNRVL CEKLEDKMKG
0301: TVVEGTIQQL LEGHHMNYIE CIRVDYKSTR KESFYDLQLD VKGCRDVYAS FDKYVEVERL EGDNKYQAEQ HGLQDARKGV LFIDFPPVLQ LQLKRFEYDF
0401: VRDAMIKIND RYEFPLQLDL DRENGKYLSP DADRSVRNLY SLHSVLVHSG GVHGGHYYAY IRPTLSDQWY KFDDERVTKE DTKRALDEQY GGEEELPHTN
0501: PGFNNSPFKF TKYSNAYMLV YIRESDKEKI ICDVDEKDIA EHLRIRLKKE QEEKEQKRKE KAEAHLYTII KVARDEDLGE QIGKEIYFDL VDHDKVHSFR
0601: IQKQMPFAQF KEEVAKEFGI PVQFQRYWLW AKRQNHTYRP NRPLTAQEEL QSVGQLREVS NKANHAELKL FLEVEFGLDL QPLPPLEKTK DDILLFFKLY
0701: DPSKEEIRYV GRIFVKGSGK PLEILAKLNE LAGFLPDEEI ELFEEIKFEP NVMCEHINMN LSFRGCQLED GDIICFQKSL RKQGNEQYRF PEVPSFLEYV
0801: HNRQIVRFRS LEKPKEDEFS LELSKQNNYD EVVECLARHL RLDDPSRVRL TPHNCYSQQP KPQPIRYRGV DRLTEMLSHY NQTSDVLYYE VLDIPLPELQ
0901: GLKTLKVTFH HSAKDEVTIH TIRLPKQSTI ADVLNDLKTK VELSRPDAEL RLLEVFYHKI YKIFPLNERI ENINDQYWTL RAEEIPEEEK NLGAHSRLIH
1001: VYHFIKEATQ NQTQVLNFGE PFFLVIHEGE TLTEVKARIQ KKLQVPDEEF SKWKFAFLSM GRPEYLEESD IIFNRFQKRD VYGAWEQYLG LEHTDCPPKR
1101: SYSAHQNRHN FEKPVRIYN
0001: MTMMTPPPVD PEDEEMLVPN SDLVDGPAQP MEVTQPETAA STVENQPAED PPTLKFTWTI PNFSRQNTRK HYSDVFVVGG YKWRILIFPK GNNVDHLSMY
0101: LDVSDAASLP YGWSRYAQFS LAVVNQIHTR YTVRKETQHQ FNARESDWGF TSFMPLSELY DPSRGYLVND TVLVEAEVAV RKVLDYWSYD SKKETGFVGL
0201: KNQGATCYMN SLLQTLYHIP YFRKAVYHMP TTENDAPTAS IPLALQSLFY KLQYNDTSVA TKELTKSFGW DTYDSFMQHD VQELNRVLCE KLEDKMKGTV
0301: VEGTIQQLFE GHHMNYIECI NVDFKSTRKE SFYDLQLDVK GCKDVYASFD KYVEVERLEG DNKYHAEGHG LQDAKKGVLF IDFPPVLQLQ LKRFEYDFMR
0401: DTMVKINDRY EFPLELDLDR EDGKYLSPDA DRSVRNLYTL HSVLVHSGGV HGGHYYAFIR PTLSDQWYKF DDERVTKEDL KRALEEQYGG EEELPQTNPG
0501: FNNNPPFKFT KYSNAYMLVY IRESDKDKII CNVDEKDIAE HLRVRLKKEQ EEKEDKRRYK AQAHLYTIIK VARDEDLKEQ IGKDIYFDLV DHDKVRSFRI
0601: QKQTPFQQFK EEVAKEFGVP VQLQRFWIWA KRQNHTYRPN RPLTPQEELQ PVGQIREASN KANTAELKLF LEVEHLDLRP IPPPEKSKED ILLFFKLYDP
0701: EKAVLSYAGR LMVKSSSKPM DITGKLNEMV GFAPDEEIEL FEEIKFEPCV MCEHLDKKTS FRLCQIEDGD IICFQKPLVN KEIECLYPAV PSFLEYVQNR
0801: QLVRFRALEK PKEDEFVLEL SKQHTYDDVV EKVAEKLGLD DPSKLRLTSH NCYSQQPKPQ PIKYRGVDHL SDMLVHYNQT SDILYYEVLD IPLPELQGLK
0901: TLKVAFHHAT KEEVVIHNIR LPKQSTVGDV INELKTKVEL SHPDAELRLL EVFYHKIYKI FPSTERIENI NDQYWTLRAE EIPEEEKNIG PNDRLILVYH
1001: FAKETGQNQQ VQNFGEPFFL VIHEGETLEE IKNRIQKKLH VSDEDFAKWK FAFMSMGRPE YLQDTDVVYN RFQRRDVYGA FEQYLGLEHA DTTPKRAYAA
1101: NQNRHAYEKP VKIYN
0101: LDVSDAASLP YGWSRYAQFS LAVVNQIHTR YTVRKETQHQ FNARESDWGF TSFMPLSELY DPSRGYLVND TVLVEAEVAV RKVLDYWSYD SKKETGFVGL
0201: KNQGATCYMN SLLQTLYHIP YFRKAVYHMP TTENDAPTAS IPLALQSLFY KLQYNDTSVA TKELTKSFGW DTYDSFMQHD VQELNRVLCE KLEDKMKGTV
0301: VEGTIQQLFE GHHMNYIECI NVDFKSTRKE SFYDLQLDVK GCKDVYASFD KYVEVERLEG DNKYHAEGHG LQDAKKGVLF IDFPPVLQLQ LKRFEYDFMR
0401: DTMVKINDRY EFPLELDLDR EDGKYLSPDA DRSVRNLYTL HSVLVHSGGV HGGHYYAFIR PTLSDQWYKF DDERVTKEDL KRALEEQYGG EEELPQTNPG
0501: FNNNPPFKFT KYSNAYMLVY IRESDKDKII CNVDEKDIAE HLRVRLKKEQ EEKEDKRRYK AQAHLYTIIK VARDEDLKEQ IGKDIYFDLV DHDKVRSFRI
0601: QKQTPFQQFK EEVAKEFGVP VQLQRFWIWA KRQNHTYRPN RPLTPQEELQ PVGQIREASN KANTAELKLF LEVEHLDLRP IPPPEKSKED ILLFFKLYDP
0701: EKAVLSYAGR LMVKSSSKPM DITGKLNEMV GFAPDEEIEL FEEIKFEPCV MCEHLDKKTS FRLCQIEDGD IICFQKPLVN KEIECLYPAV PSFLEYVQNR
0801: QLVRFRALEK PKEDEFVLEL SKQHTYDDVV EKVAEKLGLD DPSKLRLTSH NCYSQQPKPQ PIKYRGVDHL SDMLVHYNQT SDILYYEVLD IPLPELQGLK
0901: TLKVAFHHAT KEEVVIHNIR LPKQSTVGDV INELKTKVEL SHPDAELRLL EVFYHKIYKI FPSTERIENI NDQYWTLRAE EIPEEEKNIG PNDRLILVYH
1001: FAKETGQNQQ VQNFGEPFFL VIHEGETLEE IKNRIQKKLH VSDEDFAKWK FAFMSMGRPE YLQDTDVVYN RFQRRDVYGA FEQYLGLEHA DTTPKRAYAA
1101: NQNRHAYEKP VKIYN
Arabidopsis Description
UBP12Ubiquitin carboxyl-terminal hydrolase 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPT1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.