Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 4
- endoplasmic reticulum 6
- vacuole 4
- plasma membrane 5
- golgi 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g006320.1.1 | Tomato | cytosol | 35.64 | 22.56 |
| Solyc05g055090.2.1 | Tomato | cytosol | 35.08 | 22.16 |
| Solyc10g081610.1.1 | Tomato | cytosol, extracellular, nucleus | 32.11 | 20.23 |
| Solyc11g071700.1.1 | Tomato | cytosol, plastid | 30.83 | 19.62 |
| Solyc06g073820.1.1 | Tomato | cytosol | 27.44 | 17.09 |
| Solyc03g078390.2.1 | Tomato | nucleus | 8.49 | 5.5 |
| Solyc03g005430.2.1 | Tomato | nucleus | 7.78 | 4.79 |
| Solyc09g089560.2.1 | Tomato | nucleus | 6.93 | 4.44 |
| Solyc06g017970.2.1 | Tomato | nucleus | 10.33 | 4.32 |
| Solyc06g053750.2.1 | Tomato | nucleus | 6.79 | 4.22 |
| GSMUA_Achr6P14230_001 | Banana | cytosol | 1.13 | 3.67 |
| Solyc06g053740.2.1 | Tomato | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.60.210.10 | Gene3D:3.10.20.90 | MapMan:35.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR002083 | InterPro:IPR008974 | UniProt:K4C2I7 | InterPro:MATH/TRAF_dom | PFAM:PF00917 |
| PFAM:PF12436 | PFscan:PS50144 | PANTHER:PTHR24006 | PANTHER:PTHR24006:SF565 | SMART:SM00061 | SUPFAM:SSF49599 |
| EnsemblPlantsGene:Solyc05g055100.1 | EnsemblPlants:Solyc05g055100.1.1 | InterPro:TRAF-like | UniParc:UPI0002766EA8 | InterPro:USP7_ICP0-binding_dom | SEG:seg |
Description
No Description!
Coordinates
chr5:-:64895480..64904315
Molecular Weight (calculated)
83262.3 Da
IEP (calculated)
6.468
GRAVY (calculated)
-0.347
Length
707 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVTIFFFFI IIIISDFICI LDIRLNKEQE EKEERRKAKL EARLYTIIKV ARDEDLGEQI GKDIYFDLVN HDKVRTFRVK KDTPFTQFKE EVAKAFGIPV
101: QFQRYWLWYK RNNHTYRPYH ALTVQEEVHS VGQLRESSNE MNNAELKLFL EVELCLDLRR LSSPGKTEEE ILLFFKLYDP LEEKIRYAGR LLVKESGKLL
201: EILPKLKELV GFSPDEEIDL FEEIQFHPSV WCEKLNIMLS IRDYQLEDGD IICFQKSLQN QCREQYRFPE VPLFLKYVYS WQFIARIEHV ETEQNADACL
301: YTMIKVARDE NLGEQIGKEI YFDLVNHDKV PTFCMQKQMP FTKFKEEVAK AFGIPVQFQR YWLWKKRVNN TYRPERALTS QEETQYSVGQ LRENSITVNN
401: SELKLFLEVI LCPDLRRLPP PGKKNKEILV FFKLYNPVEE SIRYVGRLFV KERSKLLEIL SKLKELASFS PDEEIDLFEE INFNPSAMCL QLNTMLSLRD
501: YNLGNGDIIC FQKSLRNQHS EQYRFPDVPS FLKYVHNRQL IGHENLIPIS HLPTNGPQLL VEAETTSMMD VLAVEGPVSA RFTWTVHNFS KLNWKKSYSD
601: AFNVGTYQWR VLMAPKGNNG DHLSLYLTVV NTAALPSGWI RYAQFSLAVL NQIDDKFTVR KDTQLQFNAR TRAWGFASFM PLTELYDPRR GYLVDDKVIL
701: EAYITLP
101: QFQRYWLWYK RNNHTYRPYH ALTVQEEVHS VGQLRESSNE MNNAELKLFL EVELCLDLRR LSSPGKTEEE ILLFFKLYDP LEEKIRYAGR LLVKESGKLL
201: EILPKLKELV GFSPDEEIDL FEEIQFHPSV WCEKLNIMLS IRDYQLEDGD IICFQKSLQN QCREQYRFPE VPLFLKYVYS WQFIARIEHV ETEQNADACL
301: YTMIKVARDE NLGEQIGKEI YFDLVNHDKV PTFCMQKQMP FTKFKEEVAK AFGIPVQFQR YWLWKKRVNN TYRPERALTS QEETQYSVGQ LRENSITVNN
401: SELKLFLEVI LCPDLRRLPP PGKKNKEILV FFKLYNPVEE SIRYVGRLFV KERSKLLEIL SKLKELASFS PDEEIDLFEE INFNPSAMCL QLNTMLSLRD
501: YNLGNGDIIC FQKSLRNQHS EQYRFPDVPS FLKYVHNRQL IGHENLIPIS HLPTNGPQLL VEAETTSMMD VLAVEGPVSA RFTWTVHNFS KLNWKKSYSD
601: AFNVGTYQWR VLMAPKGNNG DHLSLYLTVV NTAALPSGWI RYAQFSLAVL NQIDDKFTVR KDTQLQFNAR TRAWGFASFM PLTELYDPRR GYLVDDKVIL
701: EAYITLP
0001: MTMMTPPPLD QEDEEMLVPN PDLVEGPQPM EVAQTDPAAT AVENPPPEDP PSLKFTWTIP MFTRLNTRKH YSDVFVVGGY KWRILIFPKG NNVDHLSMYL
0101: DVADAANLPY GWSRYSQFSL AVVNQVNNRY SIRKETQHQF NARESDWGFT SFMPLSELYE PTRGYLVNDT VLIEAEVAVR KVLDYWSYDS KKETGFVGLK
0201: NQGATCYMNS LLQTLYHIPY FRKAVYHMPT TENDAPTASI PLALQSLFYK LQYNDTSVAT KELTKSFGWD TYDSFMQHDV QELNRVLCEK LEDKMKGTVV
0301: EGTIQKLFEG HHMNYIECIN VDYKSTRKES FYDLQLDVKG CKDVYASFDK YVEVERLEGD NKYHAEGHDL QDAKKGVLFI DFPPVLQLQL KRFEYDFMRD
0401: TMVKINDRYE FPLQLDLDRE DGRYLSPDAD KSVRNLYTLH SVLVHSGGVH GGHYYAFIRP TLSDQWYKFD DERVTKEDVK RALEEQYGGE EELPQNNPGF
0501: NNPPFKFTKY SNAYMLVYIR ESDKDKIICN VDEKDIAEHL RVRLKKEQEE KEDKRKYKAQ AHLFTTIKVA RDDDITEQIG KNIYFDLVDH EKVRSFRIQK
0601: QTPFQQFKEE VAKEFGVPVQ LQRFWIWAKR QNHTYRPNRP LSPNEELQTV GQIREASNKA NNAELKLFLE IERGPDDLPI PPPEKTSEDI LLFFKLYDPE
0701: NAVLRYVGRL MVKSSSKPMD IVGQLNKMAG FAPDEEIELF EEIKFEPCVM CEQIDKKTSF RLCQIEDGDI ICYQKPLSIE ESEFRYPDVP SFLEYVQNRE
0801: LVRFRTLEKP KEDEFTMELS KLHTYDDVVE RVAEKLGLDD PSKLRLTSHN CYSQQPKPQP IKYRGVDHLS DMLVHYNQTS DILYYEVLDI PLPELQGLKT
0901: LKVAFHSATK DEVIIHNIRL PKQSTVGDVI NELKTKVELS HQDAELRLLE VFFHKIYKIF PSTERIENIN DQYWTLRAEE IPEEEKNIGP NDRLIHVYHF
1001: TKEAGQNQQV QNFGEPFFLV IHEGETLEEI KTRIQKKLHV PDEDFAKWKF ASFSMGRPDY LLDTDVVYNR FQRRDVYGAW EQYLGLEHID NAPKRAYAAN
1101: QNRHAYEKPV KIYN
0101: DVADAANLPY GWSRYSQFSL AVVNQVNNRY SIRKETQHQF NARESDWGFT SFMPLSELYE PTRGYLVNDT VLIEAEVAVR KVLDYWSYDS KKETGFVGLK
0201: NQGATCYMNS LLQTLYHIPY FRKAVYHMPT TENDAPTASI PLALQSLFYK LQYNDTSVAT KELTKSFGWD TYDSFMQHDV QELNRVLCEK LEDKMKGTVV
0301: EGTIQKLFEG HHMNYIECIN VDYKSTRKES FYDLQLDVKG CKDVYASFDK YVEVERLEGD NKYHAEGHDL QDAKKGVLFI DFPPVLQLQL KRFEYDFMRD
0401: TMVKINDRYE FPLQLDLDRE DGRYLSPDAD KSVRNLYTLH SVLVHSGGVH GGHYYAFIRP TLSDQWYKFD DERVTKEDVK RALEEQYGGE EELPQNNPGF
0501: NNPPFKFTKY SNAYMLVYIR ESDKDKIICN VDEKDIAEHL RVRLKKEQEE KEDKRKYKAQ AHLFTTIKVA RDDDITEQIG KNIYFDLVDH EKVRSFRIQK
0601: QTPFQQFKEE VAKEFGVPVQ LQRFWIWAKR QNHTYRPNRP LSPNEELQTV GQIREASNKA NNAELKLFLE IERGPDDLPI PPPEKTSEDI LLFFKLYDPE
0701: NAVLRYVGRL MVKSSSKPMD IVGQLNKMAG FAPDEEIELF EEIKFEPCVM CEQIDKKTSF RLCQIEDGDI ICYQKPLSIE ESEFRYPDVP SFLEYVQNRE
0801: LVRFRTLEKP KEDEFTMELS KLHTYDDVVE RVAEKLGLDD PSKLRLTSHN CYSQQPKPQP IKYRGVDHLS DMLVHYNQTS DILYYEVLDI PLPELQGLKT
0901: LKVAFHSATK DEVIIHNIRL PKQSTVGDVI NELKTKVELS HQDAELRLLE VFFHKIYKIF PSTERIENIN DQYWTLRAEE IPEEEKNIGP NDRLIHVYHF
1001: TKEAGQNQQV QNFGEPFFLV IHEGETLEEI KTRIQKKLHV PDEDFAKWKF ASFSMGRPDY LLDTDVVYNR FQRRDVYGAW EQYLGLEHID NAPKRAYAAN
1101: QNRHAYEKPV KIYN
Arabidopsis Description
UBP13UBP13 [Source:UniProtKB/TrEMBL;Acc:A0A178VEE0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.