Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc05g015610.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G43560.1 | Solyc05g015610.2.1 | AT1G27320.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g053740.2.1 | Tomato | cytosol | 28.12 | 76.92 |
| Solyc03g005430.2.1 | Tomato | nucleus | 66.17 | 65.54 |
| OQU79503 | Sorghum | nucleus | 25.13 | 63.13 |
| Solyc09g089560.2.1 | Tomato | nucleus | 60.72 | 62.59 |
| AT5G52330.3 | Thale cress | cytosol | 21.7 | 62.22 |
| VIT_05s0020g04980.t01 | Wine grape | nucleus | 61.25 | 60.82 |
| CDY32539 | Canola | nucleus | 43.41 | 49.11 |
| CDY10066 | Canola | nucleus | 43.5 | 48.82 |
| AT1G04300.3 | Thale cress | nucleus | 46.13 | 48.52 |
| CDX86642 | Canola | nucleus | 44.55 | 48.52 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 45.78 | 48.42 |
| Bra015302.1-P | Field mustard | nucleus | 45.08 | 48.4 |
| Bra032518.1-P | Field mustard | nucleus | 42.27 | 48.39 |
| CDX89828 | Canola | nucleus | 44.99 | 48.26 |
| CDY18218 | Canola | nucleus | 44.82 | 48.2 |
| AT5G43560.1 | Thale cress | nucleus | 44.55 | 48.06 |
| TraesCS5B01G071600.1 | Wheat | nucleus | 44.64 | 45.28 |
| TraesCS5D01G072000.1 | Wheat | nucleus | 44.46 | 45.06 |
| TraesCS5A01G060400.1 | Wheat | nucleus | 44.46 | 45.06 |
| HORVU5Hr1G016190.3 | Barley | nucleus | 44.29 | 44.88 |
| Os05t0508700-01 | Rice | nucleus | 29.88 | 44.1 |
| EES16279 | Sorghum | nucleus | 43.32 | 43.94 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 44.99 | 36.26 |
| EES01550 | Sorghum | nucleus | 37.79 | 35.54 |
| KXG22306 | Sorghum | nucleus | 39.1 | 34.55 |
| Os01t0775300-01 | Rice | cytosol, mitochondrion, nucleus | 39.02 | 34.08 |
| TraesCS3D01G310000.1 | Wheat | nucleus | 37.61 | 33.28 |
| TraesCS1B01G339200.1 | Wheat | nucleus | 39.72 | 32.61 |
| TraesCS3B01G343300.2 | Wheat | nucleus | 37.7 | 32.52 |
| TraesCS1D01G327700.1 | Wheat | nucleus | 39.63 | 32.49 |
| TraesCS3A01G321300.2 | Wheat | nucleus | 37.52 | 32.47 |
| TraesCS1A01G325900.1 | Wheat | nucleus | 39.46 | 32.35 |
| HORVU3Hr1G075800.5 | Barley | cytosol, nucleus, plastid | 38.05 | 31.65 |
| HORVU1Hr1G078170.6 | Barley | cytosol | 39.46 | 31.22 |
| Os12t0597200-01 | Rice | cytosol, nucleus, plastid | 8.44 | 31.07 |
| Solyc05g055090.2.1 | Tomato | cytosol | 15.11 | 15.37 |
| Solyc11g006320.1.1 | Tomato | cytosol | 14.85 | 15.13 |
| Solyc11g071700.1.1 | Tomato | cytosol, plastid | 14.15 | 14.49 |
| Solyc10g081610.1.1 | Tomato | cytosol, extracellular, nucleus | 14.24 | 14.44 |
| Solyc06g073820.1.1 | Tomato | cytosol | 13.27 | 13.3 |
| Solyc03g078390.2.1 | Tomato | nucleus | 7.21 | 7.52 |
| Solyc06g017970.2.1 | Tomato | nucleus | 10.81 | 7.27 |
| Solyc05g055100.1.1 | Tomato | endoplasmic reticulum | 4.22 | 6.79 |
Protein Annotations
| EnsemblPlants:Solyc06g053750.2.1 | EnsemblPlantsGene:Solyc06g053750.2 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil | PANTHER:PTHR45001 |
| PFAM:PF00917 | PFscan:PS50144 | SEG:seg | SMART:SM00061 | SUPFAM:SSF49599 | UniParc:UPI000276575D |
| UniProt:K4C662 | MapMan:22.5.1.6 | : | : | : | : |
Description
No Description!
Coordinates
chr6:+:36603645..36619634
Molecular Weight (calculated)
126893.0 Da
IEP (calculated)
7.398
GRAVY (calculated)
-0.657
Length
1138 amino acids
Sequence
(BLAST)
(BLAST)
0001: MASSASEEAG IGKSLEGVSK GQQRCQYSET LAERRYCEQM ENGTPSTSPP YWDSDDEDDC GPKPVELYGK YTWKIDKFSQ INKRELRSNT FEVGGYKWYI
0101: LIYPQGCDVC NHLSLFLCVA NHDKLLPGWS HLAQFTIAVV NRDPRKSKYS DTLHRFWKKE HDWGWKKFMD LSRVVDGFID SDTLIIKAQV QVIREKAERP
0201: FHCLDCQYRR ELVRVYLTNV EQTCRRFVEE RRGKLGKLIG DKTRWSSFCA FWLGIDQNSR RRMSREKSDR ILKMVVKNFF IEKEVTSTLV MDSLYSGLKA
0301: LVDQTNGQTG KGKHLDAVEQ TVPIVYLEKD MFVLVDDVLL LLERAVLEPL PPKDERGPQN RTKDAASGEG TNRDHIQRDE RRLTELGRRT IEIFVLAHIF
0401: SKIEVAYKEA VALKRQEELI REEAAWLAET EKKAKRASEK EKKSKKKQSK QKRNIRKAKD KERNEKSDVM VHDKIEVDGP IGEGNEYMAE MPGQVLGKSD
0501: VLGEVSDISD SIDSIIHPDS EDRNASPVNW DTDTSEVHPS VEAGSSRLIG LPASQNVIAG RISPSMMDDS SSTCSTDSIV SVVINGTHRG FPLIQKNQKL
0601: PSRGRNERSR STCKAADWAS ETLGQTSDVV SDDGQLSDTS VSCEATGYEC QATALPSCEQ QATNKKVAVL QQRNLIDDRE KSSILKPSSV QSPSRSPQKS
0701: TVSAVLSKES LKISVTSDPI LVKSSFSDSP QLTDKSGPMV VSAETSVMLK ADPHKAVEVK PLKKPLPQPA SISTEKSLSK QVTTSATAER SISRQVPAQS
0801: RPSSAPLVTD PRPPSPVVSM VQATQLLPRS VSAAGRLGPD PSPATHSYVR QSYRNAIMGG LISGSPVGFS QPHSPSLAVN SPHPYSQSPS LTSGLMLSPG
0901: GLERTEHRSA GPSFSYGMVN EDTSWNGQKW ESSGSYSRSV SHPFVLHDIQ ESDMLKPVNS RTHDHLPSEL PACTSGCQSQ SVLADEFPHL DIINDLLNDE
1001: NGAGKASEPN SGWQRYSNHL NRQFSYPGDI SMASDLGPST HSCRFERTRS YHDELQHYYS GGTYNSIRNM IPQPNPQFVN GQIDQLVHDQ WQLMHSDPSF
1101: LGMGNGHTDT GYLYHNPDYS NMACGVNRYR VFRPSNGF
0101: LIYPQGCDVC NHLSLFLCVA NHDKLLPGWS HLAQFTIAVV NRDPRKSKYS DTLHRFWKKE HDWGWKKFMD LSRVVDGFID SDTLIIKAQV QVIREKAERP
0201: FHCLDCQYRR ELVRVYLTNV EQTCRRFVEE RRGKLGKLIG DKTRWSSFCA FWLGIDQNSR RRMSREKSDR ILKMVVKNFF IEKEVTSTLV MDSLYSGLKA
0301: LVDQTNGQTG KGKHLDAVEQ TVPIVYLEKD MFVLVDDVLL LLERAVLEPL PPKDERGPQN RTKDAASGEG TNRDHIQRDE RRLTELGRRT IEIFVLAHIF
0401: SKIEVAYKEA VALKRQEELI REEAAWLAET EKKAKRASEK EKKSKKKQSK QKRNIRKAKD KERNEKSDVM VHDKIEVDGP IGEGNEYMAE MPGQVLGKSD
0501: VLGEVSDISD SIDSIIHPDS EDRNASPVNW DTDTSEVHPS VEAGSSRLIG LPASQNVIAG RISPSMMDDS SSTCSTDSIV SVVINGTHRG FPLIQKNQKL
0601: PSRGRNERSR STCKAADWAS ETLGQTSDVV SDDGQLSDTS VSCEATGYEC QATALPSCEQ QATNKKVAVL QQRNLIDDRE KSSILKPSSV QSPSRSPQKS
0701: TVSAVLSKES LKISVTSDPI LVKSSFSDSP QLTDKSGPMV VSAETSVMLK ADPHKAVEVK PLKKPLPQPA SISTEKSLSK QVTTSATAER SISRQVPAQS
0801: RPSSAPLVTD PRPPSPVVSM VQATQLLPRS VSAAGRLGPD PSPATHSYVR QSYRNAIMGG LISGSPVGFS QPHSPSLAVN SPHPYSQSPS LTSGLMLSPG
0901: GLERTEHRSA GPSFSYGMVN EDTSWNGQKW ESSGSYSRSV SHPFVLHDIQ ESDMLKPVNS RTHDHLPSEL PACTSGCQSQ SVLADEFPHL DIINDLLNDE
1001: NGAGKASEPN SGWQRYSNHL NRQFSYPGDI SMASDLGPST HSCRFERTRS YHDELQHYYS GGTYNSIRNM IPQPNPQFVN GQIDQLVHDQ WQLMHSDPSF
1101: LGMGNGHTDT GYLYHNPDYS NMACGVNRYR VFRPSNGF
0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.