Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G433200.1 | |
| TraesCS3B01G469000.1 | |
| TraesCS3D01G426600.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G43560.1 | TraesCS3A01G433200.1 | AT1G27320.1 | 18642946 |
| AT5G43560.1 | TraesCS3B01G469000.1 | AT1G27320.1 | 18642946 |
| AT5G43560.1 | TraesCS3D01G426600.1 | AT1G27320.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G072000.1 | Wheat | nucleus | 98.31 | 98.31 |
| TraesCS5B01G071600.1 | Wheat | nucleus | 98.04 | 98.13 |
| HORVU5Hr1G016190.3 | Barley | nucleus | 96.79 | 96.79 |
| OQU79503 | Sorghum | nucleus | 32.15 | 79.69 |
| EES16279 | Sorghum | nucleus | 75.96 | 76.03 |
| Zm00001d030960_P003 | Maize | nucleus | 74.18 | 74.11 |
| Zm00001d030958_P001 | Maize | nucleus | 30.01 | 73.9 |
| Zm00001d041395_P002 | Maize | nucleus | 71.06 | 71.83 |
| Os12t0597200-01 | Rice | cytosol, nucleus, plastid | 19.5 | 70.87 |
| PGSC0003DMT400042094 | Potato | cytosol | 24.22 | 66.83 |
| AT5G52330.3 | Thale cress | cytosol | 20.84 | 58.94 |
| Solyc06g053740.2.1 | Tomato | cytosol | 21.64 | 58.41 |
| CDX73257 | Canola | cytosol | 19.23 | 53.2 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 48.89 | 51.02 |
| Bra023279.1-P | Field mustard | cytosol | 15.58 | 50.14 |
| CDX93823 | Canola | cytosol | 16.92 | 49.1 |
| VIT_05s0020g04980.t01 | Wine grape | nucleus | 48.62 | 47.64 |
| KRH31732 | Soybean | nucleus | 47.46 | 46.8 |
| KRH34524 | Soybean | nucleus | 46.22 | 45.49 |
| KRG92287 | Soybean | nucleus | 45.95 | 45.26 |
| Solyc03g005430.2.1 | Tomato | nucleus | 45.86 | 44.82 |
| Solyc06g053750.2.1 | Tomato | nucleus | 45.06 | 44.46 |
| CDX89828 | Canola | nucleus | 41.32 | 43.73 |
| Bra015302.1-P | Field mustard | nucleus | 41.23 | 43.68 |
| CDY10066 | Canola | nucleus | 39.18 | 43.39 |
| Solyc09g089560.2.1 | Tomato | nucleus | 42.65 | 43.39 |
| KRG90366 | Soybean | endoplasmic reticulum, plasma membrane | 47.28 | 43.24 |
| CDY18218 | Canola | nucleus | 40.52 | 43.01 |
| CDX86642 | Canola | nucleus | 39.98 | 42.97 |
| AT5G43560.1 | Thale cress | nucleus | 40.25 | 42.84 |
| CDY32539 | Canola | nucleus | 38.2 | 42.64 |
| AT1G04300.3 | Thale cress | nucleus | 40.61 | 42.14 |
| Bra032518.1-P | Field mustard | nucleus | 36.78 | 41.55 |
| CDY26906 | Canola | cytosol | 8.1 | 41.36 |
| Bra010174.1-P | Field mustard | cytosol | 8.1 | 41.36 |
| AT4G16045.1 | Thale cress | cytosol | 13.71 | 40.31 |
| CDY01258 | Canola | cytosol | 7.21 | 39.51 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 49.42 | 39.31 |
| CDY01264 | Canola | cytosol | 7.12 | 39.02 |
| Bra033684.1-P | Field mustard | nucleus | 29.39 | 35.6 |
| CDY22344 | Canola | nucleus | 29.39 | 35.6 |
| CDX94711 | Canola | nucleus | 30.01 | 34.99 |
| TraesCS3A01G321300.2 | Wheat | nucleus | 40.43 | 34.52 |
| TraesCS1A01G325900.1 | Wheat | nucleus | 42.03 | 34.01 |
| PGSC0003DMT400042093 | Potato | nucleus | 16.47 | 27.69 |
| TraesCS5A01G105900.1 | Wheat | cytosol | 14.69 | 14.75 |
| TraesCS4A01G163000.1 | Wheat | cytosol | 14.34 | 14.41 |
| TraesCS2A01G246800.3 | Wheat | golgi | 13.62 | 13.67 |
| TraesCS3A01G295900.7 | Wheat | cytosol | 12.91 | 13.13 |
| TraesCS3A01G176700.1 | Wheat | cytosol | 1.51 | 8.72 |
| TraesCS4A01G038800.2 | Wheat | mitochondrion, nucleus | 7.84 | 8.19 |
| Bra041162.1-P | Field mustard | cytosol, nucleus, plastid | 1.25 | 7.04 |
| TraesCS6A01G230500.1 | Wheat | nucleus, plastid | 9.71 | 6.58 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G060400.1 | EnsemblPlantsGene:TraesCS5A01G060400 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | PANTHER:PTHR45001 | PFAM:PF00917 |
| PFscan:PS50144 | SEG:seg | SMART:SM00061 | SUPFAM:SSF49599 | TIGR:cd00121 | MapMan:22.5.1.6 |
Description
No Description!
Coordinates
chr5A:-:63372648..63381379
Molecular Weight (calculated)
125100.0 Da
IEP (calculated)
6.037
GRAVY (calculated)
-0.789
Length
1123 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAGTLVEDYT GDGRSSSTED LPSDQQSHSG ESLAEWRSSE QVENGTPSTS PAYSDTEDDD CGPRPPELYG KFTWRIDNFS QINKRELRSN SFDVGGYKWY
0101: ILIYPQGCDV CNHLSLFLCV ANHDKLLPGW SHFAQFTIAV INRDPKKSKY SDTLHRFWKK EHDWGWKKFM ELSKLHDGFV IEDVLTIKAQ VQVIREKADR
0201: PFRCLDGQYR RELVRVYLSN VEQICRRFID ERRSKFCRLI EDRLRWSSFN AFWLGMDPSM RRNMTREKTD TILKVLVKHF FIEKEVTSTL VMDSLYTGLK
0301: ALEYKSKNQV GLSKLTETDA RSTSMVLVEQ DMFVLADDVL ILLERATLDT LPHQQLPTKD EKASQNRTKE SSSGDDFNKD SIERDDRRLI ELGWKTLEFF
0401: ALAHIFSRIE VAYQEAVALK RQEELIREEE AAGLAEIELK AKRSAAEKEK RIRKKQAKQK KNNRKNNKGK NERVDMKEVA LEGSPSDDRN PDDLSSQAEE
0501: VTSNPDNPDE ASDISDNRDD NSEVLNVDLE DCESSPVNWE TDASETRGIV PEGGDVQNEQ SGKRASFVDD SSSTCSSDSV PSVILNGLNT GGAWTNVKSS
0601: SNRGNNRRNK DTDLRTGHAH GGSNPAPNGS YGSSNSKDMR LEAGDDRVVS QKKQNAQRHV DVTSPSKLRM TESSIPSVSP VKKQPIFSQQ PKSSLESTNN
0701: LSSRATEVSA AAASTTTTRT GVASAPTVQL VPNKGPLSVP PTHNERSVPV ASRPLQVPLP TKSESQKPTS LVNSSSATKV ITVSRPLSAP QVPAAKQVAP
0801: AVSTVQTAPV LSRSRSAVGR LGNEPSASAP SYIPRSYRNA MMEKSSVGAS GLTHHTSSSG QGVTHSQSVF ASSPSILSPD NSARTEKSSL EPGFTFGTVK
0901: PESLNQYQWR EESSQQASCS SSSSNDHGLL NSSVGNESDK LNLNGRPRSK QLLSEISTRF TPYQPQGLVG DEFPHLDIIN DLLDEELGDR RKVLQPGFVR
1001: QFSMPNNVPN NASTPDYGMF NDQYLFDQSE QYYDEELAPY YSDLNGGPQG LRDRSYSQFD LPSYSNSQFD DMVMGQWPYS RADNSMPNFG ADINAYPYQS
1101: RDYQTTSANA ASRYPSYHPG NGH
0101: ILIYPQGCDV CNHLSLFLCV ANHDKLLPGW SHFAQFTIAV INRDPKKSKY SDTLHRFWKK EHDWGWKKFM ELSKLHDGFV IEDVLTIKAQ VQVIREKADR
0201: PFRCLDGQYR RELVRVYLSN VEQICRRFID ERRSKFCRLI EDRLRWSSFN AFWLGMDPSM RRNMTREKTD TILKVLVKHF FIEKEVTSTL VMDSLYTGLK
0301: ALEYKSKNQV GLSKLTETDA RSTSMVLVEQ DMFVLADDVL ILLERATLDT LPHQQLPTKD EKASQNRTKE SSSGDDFNKD SIERDDRRLI ELGWKTLEFF
0401: ALAHIFSRIE VAYQEAVALK RQEELIREEE AAGLAEIELK AKRSAAEKEK RIRKKQAKQK KNNRKNNKGK NERVDMKEVA LEGSPSDDRN PDDLSSQAEE
0501: VTSNPDNPDE ASDISDNRDD NSEVLNVDLE DCESSPVNWE TDASETRGIV PEGGDVQNEQ SGKRASFVDD SSSTCSSDSV PSVILNGLNT GGAWTNVKSS
0601: SNRGNNRRNK DTDLRTGHAH GGSNPAPNGS YGSSNSKDMR LEAGDDRVVS QKKQNAQRHV DVTSPSKLRM TESSIPSVSP VKKQPIFSQQ PKSSLESTNN
0701: LSSRATEVSA AAASTTTTRT GVASAPTVQL VPNKGPLSVP PTHNERSVPV ASRPLQVPLP TKSESQKPTS LVNSSSATKV ITVSRPLSAP QVPAAKQVAP
0801: AVSTVQTAPV LSRSRSAVGR LGNEPSASAP SYIPRSYRNA MMEKSSVGAS GLTHHTSSSG QGVTHSQSVF ASSPSILSPD NSARTEKSSL EPGFTFGTVK
0901: PESLNQYQWR EESSQQASCS SSSSNDHGLL NSSVGNESDK LNLNGRPRSK QLLSEISTRF TPYQPQGLVG DEFPHLDIIN DLLDEELGDR RKVLQPGFVR
1001: QFSMPNNVPN NASTPDYGMF NDQYLFDQSE QYYDEELAPY YSDLNGGPQG LRDRSYSQFD LPSYSNSQFD DMVMGQWPYS RADNSMPNFG ADINAYPYQS
1101: RDYQTTSANA ASRYPSYHPG NGH
0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.