Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400042094 | Potato | cytosol | 58.94 | 57.49 |
| OQU79503 | Sorghum | nucleus | 56.17 | 49.23 |
| AT4G16045.1 | Thale cress | cytosol | 39.04 | 40.58 |
| Os05t0508700-01 | Rice | nucleus | 60.45 | 31.13 |
| AT1G04300.3 | Thale cress | nucleus | 74.81 | 27.45 |
| AT5G43560.1 | Thale cress | nucleus | 67.76 | 25.5 |
| VIT_05s0020g04980.t01 | Wine grape | nucleus | 67.76 | 23.47 |
| Solyc09g089560.2.1 | Tomato | nucleus | 64.48 | 23.19 |
| KRG92287 | Soybean | nucleus | 66.5 | 23.16 |
| KRH34524 | Soybean | nucleus | 66.5 | 23.14 |
| KRH31732 | Soybean | nucleus | 65.49 | 22.83 |
| Solyc03g005430.2.1 | Tomato | nucleus | 63.22 | 21.85 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 59.19 | 21.84 |
| Solyc06g053750.2.1 | Tomato | nucleus | 62.22 | 21.7 |
| KRG90366 | Soybean | endoplasmic reticulum, plasma membrane | 66.0 | 21.34 |
| EES16279 | Sorghum | nucleus | 59.7 | 21.12 |
| TraesCS5B01G071600.1 | Wheat | nucleus | 59.19 | 20.94 |
| TraesCS5D01G072000.1 | Wheat | nucleus | 59.19 | 20.93 |
| TraesCS5A01G060400.1 | Wheat | nucleus | 58.94 | 20.84 |
| HORVU5Hr1G016190.3 | Barley | nucleus | 58.94 | 20.84 |
| EES01550 | Sorghum | nucleus | 57.93 | 19.01 |
| KXG22306 | Sorghum | nucleus | 61.21 | 18.87 |
| Os01t0775300-01 | Rice | cytosol, mitochondrion, nucleus | 59.7 | 18.19 |
| TraesCS3D01G310000.1 | Wheat | nucleus | 58.19 | 17.96 |
| TraesCS3A01G321300.2 | Wheat | nucleus | 58.44 | 17.64 |
| TraesCS3B01G343300.2 | Wheat | nucleus | 58.44 | 17.59 |
| TraesCS1B01G339200.1 | Wheat | nucleus | 61.21 | 17.53 |
| TraesCS1A01G325900.1 | Wheat | nucleus | 61.21 | 17.51 |
| TraesCS1D01G327700.1 | Wheat | nucleus | 60.96 | 17.44 |
| HORVU3Hr1G075800.5 | Barley | cytosol, nucleus, plastid | 58.69 | 17.03 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 60.2 | 16.93 |
| HORVU1Hr1G078170.6 | Barley | cytosol | 60.45 | 16.69 |
| AT3G11910.1 | Thale cress | cytosol | 22.67 | 8.07 |
| AT5G06600.1 | Thale cress | cytosol | 22.42 | 7.97 |
| AT2G25330.1 | Thale cress | nucleus | 12.85 | 7.36 |
| AT2G25320.3 | Thale cress | nucleus, plastid | 13.85 | 3.29 |
| AT3G49600.1 | Thale cress | cytosol | 8.82 | 3.28 |
| Os12t0597200-01 | Rice | cytosol, nucleus, plastid | 0.25 | 0.32 |
| PGSC0003DMT400042093 | Potato | nucleus | 0.5 | 0.3 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:22.5.1.6 | EntrezGene:835309 | UniProt:A0A178UKB2 | ProteinID:AED96201.1 | ProteinID:ANM69978.1 |
| ProteinID:ANM69979.1 | ArrayExpress:AT5G52330 | EnsemblPlantsGene:AT5G52330 | RefSeq:AT5G52330 | TAIR:AT5G52330 | RefSeq:AT5G52330-TAIR-G |
| EnsemblPlants:AT5G52330.3 | ProteinID:BAB10530.1 | EMBL:BT030314 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | RefSeq:NP_001331622.1 | RefSeq:NP_001331623.1 | RefSeq:NP_200046.1 |
| ProteinID:OAO93482.1 | PFAM:PF00917 | PFscan:PS50144 | PANTHER:PTHR26379 | PANTHER:PTHR26379:SF228 | UniProt:Q9FHC7 |
| SMART:SM00061 | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI000009C905 | SEG:seg | : |
Description
At5g52330 [Source:UniProtKB/TrEMBL;Acc:Q9FHC7]
Coordinates
chr5:-:21247355..21249876
Molecular Weight (calculated)
46776.4 Da
IEP (calculated)
7.528
GRAVY (calculated)
-0.535
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKTDVDDEY GLKPSELYGK NTWKIKKFSQ ISKREFASSV FEIGGYSWHI LMYPEGCDVS NHLSLFLCVA NHDELLPGWS QLAQFTISVM HKDPKKSKFS
101: DTLHRFWKKE HDWGWKKFME LPKLRDGFID DSGCLTIETK VQVIRDRVDR PFFLDYGYKT EIVRVYFRNI EQIFLRFVEE RRSKLEKLIE DKAKWTSFGV
201: FWLGMDKNSR REMSREKMDV ILKGFVKHFF MENVVTSPIA MDCLYNGLKD LEVQTKNKKA SPKLLDDKEL PAPFVKVDRD MFVLVDDDVL LLLERAALLE
301: RAAPEPLPPK DDKALQNRIK EDKDEEDINK EAYEICLNEW GRRTVEIFVL DHIFSKIEVA YKEAIALKRQ EELIREEEET SKRSKVLKKG FGKCRLN
101: DTLHRFWKKE HDWGWKKFME LPKLRDGFID DSGCLTIETK VQVIRDRVDR PFFLDYGYKT EIVRVYFRNI EQIFLRFVEE RRSKLEKLIE DKAKWTSFGV
201: FWLGMDKNSR REMSREKMDV ILKGFVKHFF MENVVTSPIA MDCLYNGLKD LEVQTKNKKA SPKLLDDKEL PAPFVKVDRD MFVLVDDDVL LLLERAALLE
301: RAAPEPLPPK DDKALQNRIK EDKDEEDINK EAYEICLNEW GRRTVEIFVL DHIFSKIEVA YKEAIALKRQ EELIREEEET SKRSKVLKKG FGKCRLN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.